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Author SHA1 Message Date
Ruben Di Battista
9675db4e7f qt: Fix build with GCC9 for version 4 (#12832) 
* qt: Fix build w/ GCC9 for @4:

* qt: Fix patch filename and qt version

* Fix typo in patch name
 2019-09-14 14:00:46 -05:00
Toyohisa Kameyama
c26a3ff894 flang: build on arm. (#12808) 2019-09-14 11:15:06 -05:00
Scott Wittenburg
1050fa5546 Fixes identified in ecp facilities hackathon fixes: 
- improve mirror git repo management
- minio s3 implementation needs endpoint_url
- Remove image key from rebuild-index job
- Remove image, rely on tags instead
 2019-09-13 22:57:15 -07:00
Scott Wittenburg
6d745a56fd Implement an optional compiler bootstrapping phase 2019-09-13 22:57:15 -07:00
Scott Wittenburg
5323a5cff9 Remove CombinatorialSpecSet in favor of environments + stacks 2019-09-13 22:57:15 -07:00
Scott Wittenburg
0b67f30e21 Add pre-ci job generation for a multi-repo setup 2019-09-13 22:57:15 -07:00
Scott Wittenburg
fabbb3d58a Refactor release-jobs cmd based on use of environments (no docker either) 2019-09-13 22:57:15 -07:00
Scott Wittenburg
73c161b7de Add schema for new gitlab-ci and cdash additions to environment 2019-09-13 22:57:15 -07:00
Adam J. Stewart
5f18696169 py-bleach package: add version 3.1.0 (#12814) 2019-09-13 19:15:54 -07:00
Adam J. Stewart
3a47a6196f py-cython package: fix --test (#12813) 
Fix bug in string conversion of "make_jobs"
 2019-09-13 19:15:06 -07:00
Adam J. Stewart
a3c6b07c96 py-emcee package: add version 2.2.1 (#12812) 2019-09-13 19:13:45 -07:00
Adam J. Stewart
f9b8442e1b wcslib package: add version 6.4 (#12810) 2019-09-13 19:09:54 -07:00
Glenn P Johnson
6937416a65 Add diamond dependency 2019-09-13 19:08:57 -07:00
Glenn P Johnson
09047d76e9 Update braker package 
- add version 2.1.4
- change url to github
- add perl dependencies
- new version has a new source layout
- filter shebang to use spack perl
 2019-09-13 19:08:57 -07:00
Glenn P Johnson
b046ee20f5 Fixes for augustus package 
- add missing perl dependency
- only filter Makefile if referred to dependency is in the spec
- rewrite the shebang line of scripts to use spack perl
- remove tabix dependency as tabix and bgzip are part of htslib
 2019-09-13 19:07:35 -07:00
Glenn P Johnson
2256890d4e Update genemark-et package 
- add version 4.46
- add missing perl dependencies
- new version has different source layout
- filter shebang to use spack perl
 2019-09-13 19:05:02 -07:00
Sinan
6df57bb2d0 New package: py-pykwalify (#12540) 2019-09-13 12:22:08 -07:00
Frédéric Simonis
3f06d5c12a preCICE: added versions 1.6.0 and 1.6.1 (#12809) 2019-09-13 16:04:50 +02:00
Glenn Johnson
3cc95c6427 diamond: added version 0.9.25 (#12805) 2019-09-13 07:37:52 +02:00
Sinan
48e9090252 New package: py-ruamel-yaml (#12543) 2019-09-12 15:46:39 -07:00
Owen Solberg
78f3f4c309 Singularity package: add version 3.4.0 (#12785) 
This version in combination with the included patch can install
without root.
 2019-09-12 13:45:00 -07:00
Owen Solberg
6608876747 New package: cryptsetup (#12762) 
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
 2019-09-12 13:41:53 -07:00
Sinan
b95b4bb9e0 add compilation option to sqlite (#12794) 
* add compilation option to sqlite

* rename variant

* fix bug

* re-rename variant
 2019-09-12 15:31:03 -05:00
ktsai7
96ba5a1265 Update legion gasnet config (#12523) 2019-09-12 13:46:37 -06:00
Tyler Reddy
25dbc9fb8e BUG: recursively load modules with tcsh (#12664) 
* for tcsh and csh, spack load -r package
should now correctly load recursively instead
of only loading the target package without any
dependencies
 2019-09-12 11:11:27 -06:00
Simo Tuomisto
5a6d060b52 py-gpaw: Fixed broken fftw linking in newer versions of py-gpaw (#12795) 2019-09-12 09:36:45 -05:00
brietzke
3269f712f0 fgsl: new version + fix for recent spack commit (#12790) 2019-09-11 20:15:50 -05:00
Greg Becker
b1868f35ec
module parsing: make heuristic to get paths from modules more robust (#12693) 
* module parsing: make heuristic to get paths from modules more robust

* refactor module parsing
 2019-09-11 10:51:44 -07:00
Chris Green
e727e79b73 jsoncpp: new versions, support cxxstd variant. (#12780) 2019-09-11 12:32:49 +02:00
Owen Solberg
e3d06dc0d7 create package popt (#12783) 2019-09-10 21:33:33 -05:00
Jonas Lippuner
97641aab63 fix bug in p4est (don't use MPI spec if not compiling with MPI) (#12784) 2019-09-10 19:39:42 -05:00
Hironori-Yamaji
9962696128 openmx: new package (#12768) 
* openmx: new package

* openmx: use copy method
 2019-09-10 12:59:13 -05:00
Janne Blomqvist
3f1762bcc2 cuda: New version 10.1.243 (#12777) 
* cuda: New version 10.1.243

Adds CUDA 10.1.243. The installer command-line arguments have slightly
changed, hence in the install method the version needs to be inspected
in order to give the correct arguments for the new installer.

* cuda: Combine common command-line arguments

The CUDA 10.1+ installer has slightly different command-line arguments
than previous versions.  Keep the common parts together and only split
where they are different.

* Make flake8 happy
 2019-09-10 10:52:55 -07:00
Owen Solberg
c23bea80bd py-atropos: new package (#12745) 
* create new package py-atropos

* remove whitespace

* make tqdm and pysam dependencies optional, exposed as variants
 2019-09-10 12:18:31 -05:00
Hironori-Yamaji
fefd998509 ccs-qcd: disable parallel builds (#12775) 2019-09-10 14:19:09 +02:00
Axel Huebl
113365744e
packages service: fix docker build again (#12774) 
CD is hard.
 2019-09-09 18:24:16 -07:00
Axel Huebl
0d270e0d2a
packages service: fix docker build (#12773) 
The build instructions I cloned from did not work ;)
 2019-09-09 16:41:04 -07:00
Axel Huebl
221acadc7d
packages build: fix path to spack (#12772) 
Fix docker build for packages.spack.io
 2019-09-09 14:52:36 -07:00
Axel Huebl
8ea358d849
Fix CD: Packages Service First (#12764) 
* Fix CD: Packages Service First

Build the packages.spack.io service images first, so they are
guaranteed to be pushed even if further images fail to build.

Fix the query to the `spack` script executed in later builds.

* CD: Remove Spack Images

Now done on Dockerhub.
 2019-09-09 13:22:47 -07:00
xfzhao
c30f9c6833 update bbmap (#12721) 
* update bbmap

* remove one extra comment line
 2019-09-09 12:55:06 -05:00
Michael Kuhn
62f0286f5e Fix pkgconfig dependencies (#12714) 
pkgconfig is the virtual dependency, pkg-config is an implementation.
 2019-09-09 12:54:46 -05:00
brietzke
4de32033b1 Update py-bokeh: new version & dependencies" (#12724) 
* update py-bokeh: new version & dependencies

* Revert "update py-bokeh: new version & dependencies"

This reverts commit 5e191a0b20a89f09630b4d223a28b19db715603f.

* update py-bokeh: new version & dependencies

* trigger travis-ci

* adjust python dependency-type to br
 2019-09-09 11:59:27 -05:00
brietzke
155a667b7a New package: py-fsspec (#12725) 
* update py-bokeh: new version & dependencies

* Revert "update py-bokeh: new version & dependencies"

This reverts commit 5e191a0b20a89f09630b4d223a28b19db715603f.

* new package: py-fsspec: add package.py

* trigger travis-ci

* adjust python dependency-type to br
 2019-09-09 11:58:49 -05:00
Dan Lipsa
1a8c572316 Paraview version (#12766) 
* Update paraview

* Paraview 5.6.2 provides only .xz (no .gz)

* Add list_url and list_depth
 2019-09-09 11:57:53 -05:00
Massimiliano Culpo
bd0fed7090 clang: add another regex for version detection (#12769) 
This is similar to #10191. The Ubuntu package for clang 8.0.0 displays
a very unusual version string, and we need this new regex to detect it
as just 8.0.0

Unit test have been complemented by the output that was failing
detection.
 2019-09-09 11:37:04 -05:00
viniciusvgp
7849dbb529 binutils: fix undefined symbol libintl_dgettext (#12770) 2019-09-09 11:05:04 -05:00
Axel Huebl
02931a82fd Add CORS for spack.packages.io 
Add the HTTP header `Access-Control-Allow-Origin: *` for our NGINX
service that is serving static JSON content on
https://spack.packages.io .
 2019-09-08 17:19:37 -07:00
Greg Sjaardema
db1fb16840 CGNS: Add setting of RPATH on Darwin (#9984) 
* CGNS: Add setting of RPATH on Darwin

This should go in the CGNS CMakeLists.txt, but it isn't there yet and won't be in previous versions, so best to handle it here.  
If building on darwin/MacOSX, need to set the RPATH so applications can find shared library correctly.

* Restrict MACOSX_RPATH setting

This has now been added to the CGNS distribution, so the setting of `CMAKE_MACOSX_RPATH` should be restricted to current and previous releases and not upcoming releases.
 2019-09-08 17:14:56 -05:00
Geoffrey Oxberry
983e6b4a4a fribidi@1.0.5: new package (#12386) 2019-09-08 17:10:39 -05:00
Sinan
4a18d40a66 new package: py-iniparse (#12638) 
* new package: py-iniparse

* add git version supporting python3

* redo python dependency
 2019-09-08 17:09:24 -05:00