Commit graph

19013 commits

Author SHA1 Message Date
Jen Herting
3b38e4345f
py-filterpy: new package (#20747) 2021-01-22 14:06:34 +01:00
Tomoyasu Nojiri
f6db2f4da4
cnvnator: add -lcrypto to Makefile. (#21209) 2021-01-22 13:50:05 +01:00
René Widera
4b466d06f4
isaac: add v1.5.1 and v1.5.2 (#21216) 2021-01-22 13:11:28 +01:00
arjun-raj-kuppala
f41317d8b2
AMD ROCm: Bump rocm-tensile with 3.9.0, 3.10.0, 4.0.0 releases (#20439) 2021-01-22 13:07:36 +01:00
Dominik Gresch
ec7caefc69
Add Quantum ESPRESSO version 6.7. (#21192) 2021-01-22 09:58:30 +01:00
Harmen Stoppels
d42d9a619a
add patch for not linking to clang rt bulitin lib, and apply patches to 3.9.0 too (#20937) 2021-01-22 09:55:46 +01:00
Tom Payerle
f7064fa181
mumps: Fix for problematic src/makefile patch (#20590) (#20758)
* mumps: Fix for problematic src/makefile patch (#20590)

Minor change in src/Makefile between 5.2.0 and 5.3.3 causing patch to
break.  Split into 2 patchfiles

* mumps: Additional patch for fixing #20590

This is to fix issue wherein build fails on Ubuntu due to undefined
symbols, despite symbols being included in other libraries referenced
on the compilation line.  I believe the issue is that the inclusion
of libsmumps.so was (due to my original patch) causing
libmumps_common.so to be automatically loaded, but since libpords.so
was not also required, the error was occuring.  I have added libpords.so
along with libmumps_common.so to be explicit dependencies of
libsmumps.so, etc., which seems to resolve the issue.
2021-01-21 20:41:11 -08:00
mic84
9ed4eb7a9a
amrex: fix missing hdf5 dependency (#20714)
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2021-01-21 16:16:55 -08:00
Kurt Sansom
06f65afdd5
hdf: build with gcc10 (#20773) 2021-01-21 17:07:28 -06:00
Tamara Dahlgren
6b13909cc1
docs: Update the CudaPackage (build system) description (#20742)
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
2021-01-21 12:43:21 -08:00
Chuck Atkins
3d54ca4d5a
ecp-data-vis-sdk: Disable broken cinema variant (#21204) 2021-01-21 15:42:25 -05:00
Baptiste Jonglez
af1eda5359
miniconda3: add ppc64le package version (#21196)
It requires reorganizing version definitions to facilitate adding new architectures.

This is inspired from the cuda package.
2021-01-21 14:36:36 -06:00
Omar Padron
b76d21710b
Add develop versions of faodel and zfp (#21201)
* add master version of faodel

* add develop version of zfp
2021-01-21 14:12:21 -05:00
Tamara Dahlgren
25bab31bc8
Added ROCmPackage (build system) documentation (#20743) 2021-01-21 10:46:39 -08:00
Sreenivasa Murthy Kolam
85ea52acd1
fix build failure due to #20759 change (#21185) 2021-01-21 18:13:28 +01:00
Tomoyasu Nojiri
6e258ca6ca
catalyst: Fix for aarch64 (#21187) 2021-01-21 10:50:08 -06:00
Brian Van Essen
d3a078c7da
Add support for building with an FFT layer in LBANN. Updated the (#21184)
HWLOC requirements to properly include CUDA and NVML variants as
appropriate.
2021-01-21 10:49:53 -06:00
arjun-raj-kuppala
90a7c846f6
install lib/headers option support (#21186) 2021-01-21 10:47:55 -06:00
Tomoki, Karatsu
2957f76cb1
abinit: add version 8.10.2. (#21188) 2021-01-21 10:46:12 -06:00
vvolkl
2c6c6756a8
[assimp] add new version 5.0.1 (#21191) 2021-01-21 10:45:21 -06:00
Harmen Stoppels
0cf0be588b
Always set SPLA_OMP and SPLA_STATIC (#21195) 2021-01-21 10:43:57 -06:00
Gerasimos Chourdakis
1ceab34fc8
precice: Add version 2.2.0 (#21166) 2021-01-21 09:38:53 -06:00
Jen Herting
d9a8ff455e
[py-numba] added version 0.51.1 (#21182)
* [py-numba] added version 0.51.1

* [py-numba] updated llvmlite dependencies
2021-01-21 09:38:35 -06:00
Rémi Lacroix
afa536fc1d
Plumed: Add a new ArrayFire variant. (#20624) 2021-01-21 09:29:11 -06:00
Rémi Lacroix
6f166283ca
ArrayFire improvements (#20615)
* ArrayFire: Add version 3.7.2.

* ArrayFire: Allow using MKL as the FFTW provider.

* ArrayFire: Ensure the libraries are properly found.

The required backend(s) can be specified in the library query.
2021-01-21 09:29:00 -06:00
Simon Frasch
10baa48d95
spfft: add version 1.0.1 (#21193) 2021-01-21 15:23:01 +01:00
Scott McMillan
fcf99be939
openssl: remove preprocessor flags incompatible with NVIDIA HPC SDK (#21180)
* openssl: remove preprocessor flags incompatible with NVIDIA HPC SDK

* Update var/spack/repos/builtin/packages/openssl/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-01-20 21:42:53 -06:00
Toyohisa Kameyama
c5ed46e026
libcap-ng: fix detect python. (#21162)
* libcap-ng: fix detect python.

- add python variant.
- add --with-python and --with-python3 configure option.

* fix style.

* - Add python variant.
- change - to --
2021-01-20 21:42:36 -06:00
Tomoyasu Nojiri
bf3fb8428d
util-linux: Add ncurses depend (#21165) 2021-01-20 21:40:03 -06:00
Tomoyasu Nojiri
644b8b52e2
systemtap: Add depend (#21163)
* systemtap: Add depend

* systemtap: Fix depend
2021-01-20 21:31:04 -06:00
Scott McMillan
2ea336e6aa
libevent: Remove compiler flags incompatible with NVIDIA HPC SDK (#21181)
Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
2021-01-20 17:38:34 -06:00
Greg Sjaardema
6ecc3fc06f
SEACAS: New version v2021-01-20 (#21178)
Added a new version due to new application `nas2exo` and also adding the build of `slice` if `+applications` is specified.
2021-01-20 17:07:38 -06:00
Jen Herting
69bfdb0843
[py-statsmodels] added version 0.12.1 and updated dependencies accord… (#21175)
* [py-statsmodels] added version 0.12.1 and updated dependencies accordingly

* [py-statsmodels] added python requirements for new version and fixed formatting for readability
2021-01-20 17:07:10 -06:00
Sergei Shudler
a95bf8df43
Mirror current E4S hypre test suite test as a smoke test (#20484) 2021-01-20 15:05:25 -08:00
bryanherman
a6ea16ded5
Fix PVM dependencies (#20951)
* added m4 dep to PVM recipe

* added libtirpc dep to PVM recipe

* decode str or bytestr string to unicode

* Resolved comments from @adamjstewart on setup_build_environment
2021-01-20 15:52:22 -06:00
Robert Brunner
966f6bc2d2
Propagate SCR resource_manager flag to libyogrt dependency (#21168)
* When the SCR spec specifies a resource_manager=SLURM or LSF flag, propagate the spec through to
the libyogrt scheduler=slurm or lsf

* Use libyogrt default scheduler option when the SCR spec does not specify LSF or SLURM
2021-01-20 15:51:46 -06:00
Scott McMillan
0e2fa561f3
Perl: NVIDIA HPC SDK updates (#21177)
* Perl: NVIDIA HPC SDK updates

* fix indentation

Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
2021-01-20 15:51:06 -06:00
eugeneswalker
7f86cc87b0
store sbang_install_path in buildinfo, use for subsequent relocation (#20768) 2021-01-20 12:43:07 -08:00
Rémi Lacroix
bef250535a
Plumed: Ensure the Python interfaces are also built with Spack's wrappers. (#20625) 2021-01-20 14:12:27 -06:00
Rémi Lacroix
23181d24a2
PETSc: Add a new ptscotch variant. (#20699)
Currently the Parmetis wrapper is disabled which means nested dissection cannot be used with PTScotch.
2021-01-20 14:11:23 -06:00
Evan Bollig
2d9e36c4f0
updated relion package for new versions (#21155)
* updated relion for new versions

* Switched to checksum versions

* Enabled spack tracking for MKL and TBB when CPU optimizations are enabled

* Added variants to control MKL FFT and Ppatent feature

* Replaced tags with sha256 for older versions an and switched to virtual packages
2021-01-20 13:53:59 -06:00
Andrew-Dunning-NNL
28c0f20214
py-funcy: new recipe (#21136)
* py-funcy: new recipe

* Update var/spack/repos/builtin/packages/py-funcy/package.py

add build and run python dependencies

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-01-20 13:53:13 -06:00
Tomoyasu Nojiri
085360ec0b
qwt: Fix qt depend (#21161) 2021-01-20 13:47:03 -06:00
Erik Schnetter
d11ba90198
z3: New version 4.8.9 (#21167) 2021-01-20 13:36:46 -06:00
Baptiste Jonglez
95b974707b
openjdk: Add ppc64le package (#21173) 2021-01-20 13:30:39 -06:00
Omar Padron
43935b4917
fix an issue where some variants were not being concatenated correctly (#21174) 2021-01-20 13:27:41 -06:00
darmac
6f3027b9fb
py-iminuit: update version to fix test error (#21143)
* py-iminuit: update version to fix test error

* py-iminuit: update py-numpy limitation

* py-iminuit: fix dependency mistake
2021-01-20 13:22:35 -06:00
Tomoyasu Nojiri
a187b2fb09
py-mikado: Add version 1.2.4 (#20678)
* py-pysam: Add version 0.15.3

* py-biopython: Add version 1.78

* py-mikado: Add version 1.2.4

* py-mikado: Reflection of review points.

* py-biopython: Add python depend

* py-mikado: Fix depend

* py-mikado: Add py-tabulate depend
2021-01-20 13:21:59 -06:00
Nathan Hanford
ebc871abbf
[WIP] relocate.py: parallelize test replacement logic (#19690)
* sbang pushed back to callers;
star moved to util.lang

* updated unit test

* sbang test moved; local tests pass

Co-authored-by: Nathan Hanford <hanford1@llnl.gov>
2021-01-20 09:17:47 -08:00
Tomoyasu Nojiri
c63f680d2a
r-farver: Fix checksum for 2.0.1 (#20897) 2021-01-19 17:45:51 -08:00