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Author SHA1 Message Date
Glenn Johnson
8a7f34665b Make sure base bioconductor package can be installed. 2016-04-06 23:05:49 -05:00
Glenn Johnson
b19d6ab9c5 Check for non-numeric bits in the stem. 2016-04-06 19:08:01 -05:00
Todd Gamblin
6059da918e Merge pull request #758 from goxberry/metis-5-url-fix 
metis 5: fix download url
 2016-04-06 17:07:40 -07:00
Geoffrey Oxberry
bbd328d307 metis 5: fix download url 
Spack picks up the wrong download for metis 5.1.0 from parsing
the url field for metis 4.0.3. Add an explicit url field to fix
this bug.
 2016-04-06 16:58:48 -07:00
Todd Gamblin
4437bae16d Merge pull request #750 from goxberry/metis-4.0.3 
metis 4.0.3
 2016-04-06 16:05:02 -07:00
Todd Gamblin
feee268970 Merge pull request #754 from epfl-scitas/fixes/issue_216 
fix : module files are deleted on uninstall (fixes #216)
 2016-04-06 16:03:11 -07:00
Todd Gamblin
cac819766e Merge pull request #755 from adamjstewart/features/bash 
Add bash package
 2016-04-06 16:02:10 -07:00
Todd Gamblin
25d48f700c Merge pull request #752 from KineticTheory/pkg-netlib-lapack 
Second attempt at PR#741
 2016-04-06 16:01:33 -07:00
Geoffrey Oxberry
ddaba07d82 metis 4.0.3 
Add version 4.0.3 to metis package. Attempted to implement reasonable
versions of all variants declared for metis@5.1.0; some of these do
not have analogues in metis@4.0.3, and errors are raised accordingly.

Also updated dependencies of packages with depends_on('metis') to
depends_on('metis@5:') to ensure that these packages still build.
 2016-04-06 15:49:59 -07:00
Todd Gamblin
d62766a94d Merge pull request #756 from epfl-scitas/fixes/mpi_small_fixes 
fix : mpich and mvapich2 will use spack compilers during installation
 2016-04-06 15:35:34 -07:00
Glenn Johnson
32779ab1f6 Add r-filehash to test version naming. 2016-04-06 17:02:34 -05:00
Massimiliano Culpo
c113d390a7 mvapich2 : MPI compiler wrapper will use spack compilers during the installation phase 
mpich : fixed wrong function signature
 2016-04-06 23:51:47 +02:00
Glenn Johnson
fbabfc593d Make R extensable and add a couple of packages for verification. 
Added R as a build system so that the create template will have the
correct configure line.
Added a regex for version parsing as the R URLs are a little odd.
 2016-04-06 16:44:22 -05:00
Adam J. Stewart
380a2b23e6 Add bash package 2016-04-06 15:57:03 -05:00
Massimiliano Culpo
4001663982 leftover from cherry-pick 2016-04-06 22:19:07 +02:00
alalazo
73b6214a13 module files : proper cleanup on uninstall fixes #216 
Conflicts:
	lib/spack/spack/test/database.py
 2016-04-06 22:10:04 +02:00
Kelly (KT) Thompson
71e9f1ab8d + I am resubmitting this proposed change because it was accidentally 
overwritten. These modifications were accepted as PR#741 but somehow I
  clobbered them when PR#742 was merged. There was some unintentional overlap in
  my local repository that I didn't straighten out before pushing.
 2016-04-06 09:52:09 -06:00
alalazo
21b7734d92 modules : removed debug leftover 2016-04-06 17:08:31 +02:00
alalazo
7904f75782 modules : all the other strings are lower case 2016-04-06 17:05:47 +02:00
alalazo
e4cfe74887 modules : customization based on specs 2016-04-06 16:42:56 +02:00
alalazo
e993c17f89 modules : added environment modifications from configuration file 2016-04-06 14:02:27 +02:00
alalazo
d636b4fdde modules : more sensible name to blacklist environment variables 
modules : added skeleton to permit modifications based on specs
 2016-04-06 13:42:47 +02:00
Todd Gamblin
3c8e055ed0 Merge pull request #751 from davydden/openblas_fix_compiler 
openblas: provide basename of compilers to avoid issues with detectio…
 2016-04-06 02:47:37 -07:00
Denis Davydov
9b3c7b8afa openblas: provide basename of compilers to avoid issues with detection of Fortran 2016-04-06 10:55:59 +02:00
Dhanannjay 'Djay' Deo
071548a62f Building VisIt with silo 2016-04-05 23:16:57 -04:00
Dhanannjay Deo
f221f64509 Add variant for shared library 2016-04-05 23:11:18 -04:00
Dhanannjay Deo
c3c70cf704 Install lite pdb headers 2016-04-05 23:11:18 -04:00
Kelly (KT) Thompson
340ad44aab Merge remote-tracking branch 'upstream/develop' into pkg-exuberant-ctags 2016-04-05 13:31:06 -06:00
Dhanannjay Deo
2e05830eb1 Constrain to vtk6.1 qt4.8.6 and opengl1 rendering backend 2016-04-05 15:12:06 -04:00
Dhanannjay Deo
872f049b30 create visit package 2016-04-05 15:12:06 -04:00
Kelly (KT) Thompson
21ad5162c4 + Global requires ncurses. 2016-04-05 11:53:37 -06:00
Todd Gamblin
8ef9d68542 Merge pull request #726 from citibeth/efischer/160402-Qt 
Removed useless url in qt
 2016-04-05 10:51:12 -07:00
Todd Gamblin
e104592e1f Merge pull request #738 from eschnett/eschnett/cleanup-cc 
Clean up cc script
 2016-04-05 10:50:45 -07:00
Todd Gamblin
11771d9a37 Merge pull request #737 from jgalarowicz/develop 
Add changes that remove unsupported libraries from the boost build li…
 2016-04-05 10:49:27 -07:00
Jim Galarowicz
0ebb192b2f Update the MRNet package with the latest source and patch related to the krell tools needs. Also, reorder the list of version to match with the spack standard: newest to oldest. 2016-04-05 10:36:20 -07:00
Jim Galarowicz
ffed252df4 Merge remote-tracking branch 'upstream/develop' into develop 2016-04-05 10:31:41 -07:00
alalazo
670cb423f9 modules : iterating on all the dependencies doesn't reuire try/except KeyError 2016-04-05 18:44:40 +02:00
alalazo
5da37c573f modules : don't pass stream around 2016-04-05 18:41:38 +02:00
alalazo
2968b60ee0 module file : added autoload and prereq 2016-04-05 18:03:09 +02:00
alalazo
ca7d701007 module file : all the dependencies can affect the run_time environment, not only extendees 2016-04-05 16:10:04 +02:00
Erik Schnetter
a87ae5173f Update Julia 
- allow checking out the master branche
- add dependencies requires by important Julia package
- add OpenBLAS patch
 2016-04-05 09:05:46 -04:00
alalazo
c352249e30 EnvModules : narrowing the type of exceptions being "handled" 2016-04-05 14:55:05 +02:00
Erik Schnetter
4ce03b75bc Correct typo 2016-04-05 07:42:23 -04:00
alalazo
7fc0b1ebd2 module file : reverted to sensible default 2016-04-05 13:33:11 +02:00
alalazo
d546d828d3 module file : added filtering based on environment variable name 2016-04-05 13:20:28 +02:00
Todd Gamblin
faf4a1e370 Merge pull request #740 from glennpj/scikit 
Scikit
 2016-04-04 23:11:04 -07:00
Todd Gamblin
b09d87970c Merge pull request #742 from KineticTheory/pkg-dia 
Provide dia
 2016-04-04 23:09:41 -07:00
Todd Gamblin
cefcbfea8e Merge pull request #743 from eschnett/eschnett/netlib-scalapack 
Require cmake
 2016-04-04 23:09:24 -07:00
Todd Gamblin
c010a6f8b0 Merge pull request #728 from eschnett/eschnett/hdf5-1.10 
Update HDF5 to 1.10.0
 2016-04-04 23:09:08 -07:00
Glenn Johnson
c546b75443 Add missing dependency on py-setuptools for 
- py-dask
- py-decorator
 2016-04-04 19:23:48 -05:00