* soapdenovo2: strip optimization flags from injected flags
* soapdenovo2: add maintainer
* soapdenovo2: only append on cflags
* soapdenovo2: clean up some wording and implementation
Running `spack test run <python package>` resulted in the error
```
'str' object is not callable
```
because the python executable was not set correctly.
* qt-base: always link to GSS framework on macOS
On macos, the code in src/network/kernel/qauthenticator.cpp
unconditionally includes the header from the GSS framework, so we should
link against it.
This applies two patches from the dev branch. They are to be cherry-picked
into the 6.5 (probably released with 6.5.2) and 6.6 branches, but they
apply against 6.3.2 as well.
* qt-base: disable libproxy on macOS
src/network/CMakeLists.txt disables it on MACOS anyway. And as it is not
found without pkg-config, building with +network would break because of
the feature being explicitly enabled.
* qt-base: don't depend on pkgconfig on macOS
On macOS, usage of pkg-config is disabled by unsetting
PKG_CONFIG_EXECUTABLE, unless the feature pkg-config is requested explicitly.
* qt-base: don't depend on at-spi2-core on macOS
Does not build on macOS and seems to be targeted at linux. Qt6 on
homebrew does not depend on it, either.
* qt-base: fix long lines
* qt-base: restrict use of pkgconfig to linux
yes, probably not needed on windows, either
Co-authored-by: Alec Scott <alec@bcs.sh>
* qt-base: disable libproxy on Windows as well
according to src/network/CMakeLists.txt it's only used on Unix
* qt-base: improvements based on reviewer suggestions
---------
Co-authored-by: Alec Scott <alec@bcs.sh>
* legion: Add 23.06.0, variants for UCX, max nodes, update CUDA version.
* legion: Make newer CUDA versions dependent on newer Legion.
* legion: Update CUDA arch list so that we can stop tracking manually.
* Added py-eprosima-fastdds package
* Fixed python extension and dependency version
* Added build type for swig
* Added minimum cmake support
* Added py-test dependency
* Added suggestion on python extension
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Added suggestion on build type for cmake
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
---------
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Lock objects can now be instantiated independently,
without being tied to the global configuration. The
same is true for database and store objects.
The database __init__ method has been simplified to
take a single lock configuration object. Some common
lock configurations (e.g. NO_LOCK or NO_TIMEOUT) have
been named and are provided as globals.
The use_store context manager keeps the configuration
consistent by pushing and popping an internal scope.
It can also be tuned by passing extra data to set up
e.g. upstreams or anything else that might be related
to the store.
Not having the package name in the conflict messages can make debugging
conflicts exceedingly hard when trying to concretize an environment with
a sufficient number of packages. This patch adds the package name to all
of the conflict messages so that it is easy to tell just from the
message which package is causing conflicts.
* py-jinja2: add conflict for py-markupsafe@2.0.2
* Update var/spack/repos/builtin/packages/py-jinja2/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
---------
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* py-shiboken: fix build by restricting dependencies
* Update var/spack/repos/builtin/packages/py-shiboken/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Remove conflict
* Remove py-markupsafe conflict
* Update var/spack/repos/builtin/packages/py-shiboken/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
---------
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* add a phist patch to avoid trying to compile SSE code if that is not available.
* phist: make the avoid-sse patch more robust because compiler on ARM system still tried to compile SSE code
* Bugfix: spack.yaml concretizer:unify needs to be read and used
* Optional: add environment test to ensure configuration scheme is used
* Activate environment in unit tests
A more proper solution would be to keep
an environment instance configuration as
an attribute, but that is a bigger refactor
* Delay evaluation of Environment.unify
* Slightly simplify unit tests
---------
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
* Update TensorFlow ecosystem
* Re-add +cpp
* Do not use system protobuf
* Let bazel auto-detect macOS SDK version
* Unnecessary duplicated dep
* Remove unused import
Allow the following formats:
```yaml
mirrors:
name: <url>
```
```yaml
mirrors:
name:
url: s3://xyz
access_pair: [x, y]
```
```yaml
mirrors:
name:
fetch: http://xyz
push:
url: s3://xyz
access_pair: [x, y]
```
And reserve two new properties to indicate the mirror type (e.g.
mirror.spack.io is a source mirror, not a binary cache)
```yaml
mirrors:
spack-public:
source: true
binary: false
url: https://mirror.spack.io
```
A few packages have version directives evaluated
within if statements, conditional on the value of
`platform.platform()`.
Sometimes there are no cases for e.g. platform=darwin and that
causes a lot of spurious failures with version existence
audits.
This PR allows expressing conditions to skip version
existence checks in audits and avoid these spurious reports.
