Commit graph

23544 commits

Author SHA1 Message Date
Harmen Stoppels
75675de02a
Fix an issue where cray module files may not have CRAY_MPICH_DIR set (#24267) 2021-06-17 04:28:25 -06:00
Tom Payerle
b8ad621907
vtk: patch to replace use of FT_CALLBACK_DEF (#24238) 2021-06-17 04:19:23 -06:00
Andreas Baumbach
eac757da8c
New package: py-pyusb (#23733)
* New package: py-pyusb

Change-Id: I606127858b961b5841c60befc5a8353df0f9f38c

* fixup dependencies

Change-Id: I0c9b0ccee693d2c4e847717950d4ce64cb319794

* fixup 2

Change-Id: Ibaccbdafd865e363564f491054e4e4ceb778727b

* Update var/spack/repos/builtin/packages/py-pyusb/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-06-17 03:58:21 -06:00
Harmen Stoppels
011a940f44
Break llvm-amdgpu circular dependency with rocm-device-libs (#23859) 2021-06-17 03:52:33 -06:00
Anton Kozhevnikov
85c5589620
add -fallow-argument-mismatch flag for gcc10 (#24354) 2021-06-17 03:40:27 -06:00
Scott Wittenburg
ee9b1a6ea5
ci: add all locally computed hashes as job variables (#24359) 2021-06-17 03:37:31 -06:00
Jen Herting
986776c937
New package: py-pyscreeze (#24251)
* [py-pyscreeze] created template

* [py-pyscreeze] added dependencies

* [py-pyscreeze] depends on scrot

* [py-pyscreeze] Final cleanup

- added homepage
- added description
- removed fixmes

* [py-pyscreeze] using pil provider
2021-06-17 03:31:33 -06:00
Howard Pritchard
2739edd42c
open mpi: add v4.0.6 and fix a bug (#24344)
A patch no longer applies cleanly as its fixed in v4.0.6 - fix it here

==> Installing openmpi-4.0.6-in47f6rxspbnyibkdx6x4ekg6piujobd
==> No binary for openmpi-4.0.6-in47f6rxspbnyibkdx6x4ekg6piujobd found: installing from source
==> Fetching https://download.open-mpi.org/release/open-mpi/v4.0/openmpi-4.0.6.tar.bz2
Reversed (or previously applied) patch detected!  Assume -R? [n]
Apply anyway? [n]
2 out of 2 hunks ignored -- saving rejects to file opal/include/opal/sys/gcc_builtin/atomic.h.rej

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2021-06-17 03:28:37 -06:00
Harmen Stoppels
e4d80c997a
Unset LD_PRELOAD and DYLD_INSERT_LIBRARIES (#24177)
When running executables from build dependencies, we want to avoid that
`LD_PRELOAD` and `DYLD_INSERT_LIBRARIES` any of their shared libs build
by spack with system libraries.
2021-06-17 09:25:19 +00:00
Manuela Kuhn
3571c1b812
nss: add nssutil3 library to pkg-config (#24364)
This is needed for qt+webkit to build correctly.
As reference the debian package was taken:
https://salsa.debian.org/mozilla-team/nss/-/blob/master/debian/nss.pc.in
2021-06-17 03:19:31 -06:00
snehring
7831d6be75
bowtie2: add constraints for the simde dependency (#24226) 2021-06-17 01:52:27 -06:00
Asher Mancinelli
c8f58c5f1d
hiop: add v0.4.4, use commits for tags (#24365) 2021-06-17 08:53:31 +02:00
Adam J. Stewart
56f1904538
NNPACK: add new package (#24333) 2021-06-17 00:01:24 -06:00
Adam J. Stewart
10608edd24
py-peachpy: add new package (#24373) 2021-06-16 23:34:18 -06:00
Adam J. Stewart
3adee93d14
py-opcodes: add new package (#24372) 2021-06-17 07:04:38 +02:00
John Jolly
d31d339bf6
z3: update package to use CMake build system (#24337)
The Z3 solver provides a Z3Config.cmake file when built using the CMake build
system. This submission changes the package build system to inherit the
CMakePackage type. In addition to changing the build system, this submission:

- Adds the GMP variant
- Removes v4.4.0 and v4.4.1 as CMake was implemented starting with v4.5.0
2021-06-17 07:03:37 +02:00
Adam J. Stewart
5692c15e3a
TensorPipe: add new package (#24335)
* TensorPipe: add new package

* Add libuv dependency

* Add min supported version of libuv
2021-06-16 16:36:48 -05:00
Adam J. Stewart
f0a85059c2
XNNPACK: add new package (#24334)
* XNNPACK: add new package

* XNNPACK: add resources
2021-06-16 16:35:56 -05:00
Adam J. Stewart
551ae264fe
gloo: add py-torch submodule commits (#24330)
* gloo: add py-torch submodule commits

* gloo: add new version

* gloo: add master branch

* gloo: use Ninja generator
2021-06-16 10:06:40 -05:00
OliverPerks
a92bed0dc5
openssl: architecture check is now based on spec target (#24228) 2021-06-16 08:10:43 -06:00
Nicolas Cornu
3f9f2c2abe
eigen: fix build with nvhpc (#24253) 2021-06-16 07:58:31 -06:00
Adam J. Stewart
72c6fc2fda
kineto: add new package (#24319) 2021-06-16 07:43:47 -06:00
Adam J. Stewart
38088dd898
FBGEMM: add new package (#24318) 2021-06-16 07:37:44 -06:00
Tim Haines
4f40454800
Dyninst: add v11.0.1 (#24322) 2021-06-16 07:34:39 -06:00
Glenn Johnson
46214b0caa
Set r-chipseq to bioconductor format (#24315)
- added description
- converted to git from url
- set commit rather than sha256
2021-06-16 15:18:13 +02:00
Adam J. Stewart
ce0eb4862f
QNNPACK: add py-torch submodule commits (#24329) 2021-06-16 14:57:37 +02:00
Steven Smith
058ae3f0fd
ParFlow: add new package (#24331) 2021-06-16 14:56:36 +02:00
Glenn Johnson
2439b8d59c
r-effects: new package (#24342) 2021-06-16 03:11:16 -06:00
archxlith
891207f20e
kaldi: fix building with mkl (#24338) 2021-06-16 03:10:39 -06:00
archxlith
5ec708cb48
openfst: add v1.7.3 (#24339)
It's the highest version allowed in kaldi package
2021-06-16 03:07:17 -06:00
snehring
822d6a93fb
openmolcas: add v21.02, add mpi variant (#24343) 2021-06-16 10:37:36 +02:00
Adam J. Stewart
64f3e37479
cpuinfo: prevent downloads during build (#24345) 2021-06-16 08:28:25 +02:00
Adam J. Stewart
8a938978a4
pthreadpool: more specific resource destination (#24346) 2021-06-16 08:27:20 +02:00
Marc Fehling
a067b48112
p4est: add v2.3.2 (#24311) 2021-06-15 23:46:19 -06:00
Axel Huebl
ca1d1c427c
openPMD-api: Build with Legacy API (#24341)
Allow to build with `^hdf5@1.12.0 api=v110` and `v18`.
2021-06-15 18:37:52 -07:00
eugeneswalker
b330474a13
e4s ci: specs: add datatransferkit (#24325) 2021-06-15 18:37:37 -07:00
Richarda Butler
1c44912f9b
add irep and lua-lang virtual dependency (#22492)
This adds a package for `irep`, a tool for reading `lua` input decks from 
Fortran, C, and C++.

`irep` can be built with either `lua` or `luajit`.  To address this, we also add
a virtual package for lua called `lua-lang`.  `luajit` isn't, by default, a drop-in
replacement for `lua`, but we add a `+lualinks` variant to it that adds symlinks
that make it behave like `lua@5.1`.  With this variant enabled, it provides the
`lua-lang` virtual.  `lua` always provides `lua-lang`.

- [x] add `irep` package
- [x] add `+lualinks` variant to `lua-luajit`
- [x] create `lua-lang` virtual, provided by `lua` and `luajit+lualinks`

Co-authored-by: Kayla Richarda Butler <butler59@quartz1148.llnl.gov>
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2021-06-15 17:50:04 -07:00
Seth R. Johnson
5971372be7
cairo: fix gtkdocize patch (#24332)
Patch in #23971 was not correct
2021-06-15 16:08:56 -07:00
Vanessasaurus
53dae0040a
adding spack upload command (#24321)
this will first support uploads for spack monitor, and eventually could be
used for other kinds of spack uploads

Signed-off-by: vsoch <vsoch@users.noreply.github.com>

Co-authored-by: vsoch <vsoch@users.noreply.github.com>
2021-06-15 14:36:02 -07:00
Adam J. Stewart
cdc28a9623
pthreadpool: add new package (#24324) 2021-06-15 14:58:37 -06:00
Thomas Madlener
d4e04f9410
dd4hep: add v1.17 and a patch for cmake issues (#24274) 2021-06-15 13:52:34 -06:00
Seth R. Johnson
1bf84d170f
libdrm: fix one error, mark another conflict (#24309)
* libdrm: fix one configure error and require libpciaccess

Failure with `LIBS`: the linker can't find `-lrt` so configure fails on
darwin-bigsur %apple-clang@12.0.5
```
  >> 22    configure: error: in `/private/var/folders/gy/mrg1ffts2h945qj9k29s1l1dvvmbqb/T/s3j/spack-s
           tage/spack-stage-libdrm-2.4.100-ofhk6m25n2pi427ihnxmvjkfmgyzlrqc/spack-src':
  >> 23    configure: error: C compiler cannot create executables
     24    See `config.log' for more details

See build log for details:
  /var/folders/gy/mrg1ffts2h945qj9k29s1l1dvvmbqb/T/s3j/spack-stage/spack-stage-libdrm-2.4.100-ofhk6m25n2pi427ihnxmvjkfmgyzlrqc/spack-build-out.txt
```

* libpciaccess: Mark conflict with darwin

```
make[2]: *** [common_init.lo] Error 1
make[2]: *** Waiting for unfinished jobs....
common_interface.c:75:10: fatal error: 'sys/endian.h' file not found
         ^~~~~~~~~~~~~~
```
and
```
common_init.c:73:3: error: "Unsupported OS"
```
and others
2021-06-15 12:13:28 -06:00
Glenn Johnson
d7263b5da0
r-insight: new package (#24313) 2021-06-15 11:16:34 -06:00
Paul Romano
ba65cc73ef
openmc: add v0.12.2, v0.12.1 (#24320) 2021-06-15 09:19:39 -06:00
eugeneswalker
c302887f9b
openpmd-api: conflicts w hdf5 api=v110, v16, v18 (#24323)
* openpmd-api: conflicts w hdf5 api=v110, v16, v18
* Update var/spack/repos/builtin/packages/openpmd-api/package.py
* Add reference

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
2021-06-15 07:01:21 -06:00
Vanessasaurus
5521aae4f7
extending example for buildcaches (#22504)
* extending example for buildcaches

I was attempting to create a local build cache from a directory, and I found the
docs for both buildcaches and mirrors, but did not connect the docs that the
url variable could be the local filesystem variable. I am extending the docs for
buildcaches with an example of creating and interacting with one on the filesystem
because I suspect other users will run into this need and possibly not find what
they are looking for.

Signed-off-by: vsoch <vsoch@users.noreply.github.com>

* adding as follows to spack mirror list

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

Co-authored-by: vsoch <vsoch@users.noreply.github.com>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2021-06-14 21:46:27 -07:00
eugeneswalker
229247c899
e4s ci environment: packages: update to newer versions (#24308) 2021-06-14 19:26:30 -07:00
Hervé Yviquel
b92abd79ab
paraver: rename package to wxparaver, add new versions and fix installation (#24307)
* update url, add all new versions and fix installation

* add wxparaver package and set the old paraver package as deprecated

* remove update of deprecated package

* remove old version from new wxparaver

* Update url

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-06-14 17:46:12 -06:00
David M. Rogers
26c645650d
Made mxnet's cuda dependency conditional on +cuda. (#24305) 2021-06-14 15:23:09 -05:00
Vanessasaurus
39cdd085c9
adding more description to binary caches (#23934)
It is currently kind of confusing to the reader to distinguish spack buildcache install
and spack install, and it is not clear how to use a build cache once a mirror is added.
Hopefully this little big of description can help (and I hope I got it right!)

Signed-off-by: vsoch <vsoch@users.noreply.github.com>

Co-authored-by: vsoch <vsoch@users.noreply.github.com>
2021-06-14 13:17:35 -07:00