Commit graph

31965 commits

Author SHA1 Message Date
Alec Scott
d8f8b42bcb
fslsfonts: add v1.0.6 (#35869) 2023-03-07 16:58:59 -05:00
Alec Scott
3995428ad2
gatk: add v4.3.0.0 (#35864) 2023-03-07 16:53:15 -05:00
Alec Scott
76d41b7f9f
fstobdf: add v1.0.7 (#35870) 2023-03-07 16:36:08 -05:00
Samuel Li
a7501105b1
update SPERR package (#35810)
* update SPERR package
* remove blank line
* update SPERR package
* remove blank line
---------

Co-authored-by: Samuel Li <Sam@Navada>
2023-03-07 12:26:43 -08:00
Adam J. Stewart
da33334488
py-pytorch-lightning: add v1.9.4 (#35791) 2023-03-07 12:08:47 -08:00
Adam J. Stewart
68dfcd10e6
py-pytorch-lightning: torch~distributed not supported in 1.9.0 (#35809) 2023-03-07 12:05:39 -08:00
Alec Scott
4e6a8a40b7
cloog: add v0.18.4 (#35849) 2023-03-07 11:55:00 -08:00
Alec Scott
20f663d089
dnsmasq: add v2.89 (#35851) 2023-03-07 11:54:37 -08:00
Cody Balos
acf61daf99
sundials: add new version (#35796) 2023-03-07 11:52:05 -08:00
Alec Scott
a0233d2560
cmocka: add v1.1.7 (#35848) 2023-03-07 11:49:42 -08:00
Alec Scott
8c989e0aee
apr: add v1.7.2, apr-util 1.6.3 (#35832)
* apr: add v1.7.2
* apr-util: add v1.6.3
2023-03-07 11:48:39 -08:00
Alec Scott
2f5e7fb38c
awscli: add v1.27.84 (#35836)
* awscli: add v1.27.84

* Add botocore dependency to awscli

* Update var/spack/repos/builtin/packages/awscli/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Add py-botocore@1.29.84 dependency

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-03-07 13:38:17 -06:00
Alec Scott
b9bc911921
cget: add v0.2.0 (#35846) 2023-03-07 13:10:56 -05:00
Alec Scott
462df718ff
bc: add v1.07.1 (#35844) 2023-03-07 13:10:33 -05:00
Alec Scott
b20271a8e8
code-server: add v4.10.1 (#35855) 2023-03-07 12:06:01 -05:00
Alec Scott
a62992b4b1
easybuild: add v4.7.0 (#35853)
* easybuild: add v4.7.0

* Add v0.4.7 to all easybuild dependencies

* Reorder versions newest to oldest

* Fix styling on easybuild dependency loop
2023-03-07 12:05:39 -05:00
Alec Scott
818459e6fc
dash: add v0.5.12 (#35850) 2023-03-07 11:48:05 -05:00
Alec Scott
38bd499c09
colordiff: add v1.0.21 (#35847) 2023-03-07 11:47:43 -05:00
Alec Scott
f9de4c2da8
aspell: add v0.60.8 (#35834) 2023-03-07 11:47:21 -05:00
Rocco Meli
335ae31a59
Update biopython, gsd, and griddataformats (#35827)
* update mda dependencies

* apply black

* Update var/spack/repos/builtin/packages/py-gsd/package.py

* Update var/spack/repos/builtin/packages/py-griddataformats/package.py

* Update var/spack/repos/builtin/packages/py-griddataformats/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* remove numpy upper bound

* Update var/spack/repos/builtin/packages/py-griddataformats/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-gsd/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-03-07 11:47:04 -05:00
Alec Scott
c4e5ee8831
beforelight: add v1.0.6 (#35843) 2023-03-07 11:32:17 -05:00
Alec Scott
73c358819b
busybox: add v1.36.0 (#35840) 2023-03-07 11:31:52 -05:00
Alec Scott
6f396aff99
bitmap: add v1.1.0 (#35839) 2023-03-07 11:20:26 -05:00
Alec Scott
047b99fab9
blktrace: add v1.3.0 (#35842) 2023-03-07 10:56:31 -05:00
Alec Scott
a12a290ee1
bmake: add v20230303 (#35841) 2023-03-07 10:56:05 -05:00
Alec Scott
bd6c9085f0
atk: add v2.38.0 (#35833) 2023-03-07 10:55:48 -05:00
Alec Scott
c0a0d60378
appres: add v1.0.6 (#35831) 2023-03-07 10:55:29 -05:00
Alec Scott
bc84ca126e
ace: add v7.1.0 (#35829) 2023-03-07 10:55:08 -05:00
Alec Scott
3bb7570e02
alglib: add v3.20.0 (#35830) 2023-03-07 10:44:09 -05:00
Adam J. Stewart
a5b80662ae
py-matplotlib: add v3.7.1 (#35822) 2023-03-06 19:02:20 -05:00
John W. Parent
0c5360e3fd
Proj: to CMake (#35108)
* update proj

* re-add autotools support

* style

* Setup env in builders

* Drop direct windows conflict for older versions

* Default to CMake

Add new style class definiton

* Proj: setup_run_environment in package not builder

* Proj: move run env changes to pkg, rm cmake arg

* Set PROJ_LIB during build

* Style

* Rm redundant configure arg
2023-03-06 17:23:34 -05:00
Greg Becker
2ff337a2a5
compiler flags: fix multiple compilers with different flags (#35721)
Currently, if two compilers with the same spec differ on the flags, the concretizer will:

1. mix both sets of flags for the spec in the ASP program
2. error noting that the set of flags from the compiler (both of them) doesn't match the set from the lower priority compiler

This PR fixes both -- only flags from the highest priority compiler with a given spec are considered.
2023-03-06 10:29:48 -08:00
Erik Heeren
f3841774f7
py-elasticsearch: new versions (#35764)
* py-elasticsearch: new versions

Also add py-elastic-transport as a new dependency

* py-elasticsearch: py-urllib3 is no longer a dependency

* Update var/spack/repos/builtin/packages/py-elasticsearch/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-03-06 10:30:31 -06:00
Alec Scott
97c2dd3a5a
Add Hugo v0.111.1 (#35824) 2023-03-05 18:33:23 +01:00
Alec Scott
3aae80ca07
curl: add v7.88.1 and deprecate previous versions due to CVEs (#35825)
* curl: add v7.88.1 and deprecate previous versions due to CVEs

* Add self as a maintainer to curl
2023-03-05 18:32:56 +01:00
Alec Scott
973bc92813
libarchive: add v3.6.2 and deprecate previous versions due to CVE-2022-36227 (#35826) 2023-03-05 18:22:41 +01:00
Todd Gamblin
42a02411b4
windows: use sys.platform == "win32" instead of is_windows (#35640)
`mypy` only understands `sys.platform == "win32"`, not indirect assignments of that
value to things like `is_windows`. If we don't use the accepted platform checks, `mypy`
registers many Windows-only symbols as not present on Linux, when it should skip the
checks for platform-specific code.
2023-03-05 07:58:05 -08:00
Erik Heeren
4561536403
py-simpervisor: correct pypi (#35785) 2023-03-04 10:44:03 -06:00
MicK7
6b694749d3
Update python linting packages (#35811)
* add 2.14.2 py-astroid version

* add py-pylint 2.26.2

* fix black

* fix py-dill depends_on

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* fix py-astroid minor versionning

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* modify typing_extensions depends_on

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-03-03 16:06:56 -06:00
MatthewLieber
c0f48b30cf
Start using paths found in extra_rpaths in compilers.yaml when building (#35376)
* Start using paths found in extra_rpaths in compilers.yaml when building

* running black and changing maintainer list

* changing import order to pass isort

---------

Co-authored-by: Matthew Lieber <lieber.31@osu.edu>
2023-03-03 13:29:59 -08:00
Massimiliano Culpo
046416479a
Polish spack.util.environment (#35812)
Update `spack.util.environment` to remove legacy idioms.
* Remove kwargs from method signature and use a class for traces
* Uppercase a few global variables
* spack.util.environment: add type-hints
* Improve docstrings
* Fixed most style issues reported by pylint
2023-03-03 16:17:27 -05:00
Lucas Frérot
b17113b63d
snakemake: added versions 7.19.0-7.22.0 (#35535)
* snakemake: added versions 7.19.0-7.22.0

* snakemake: corrected +reports dependencies
2023-03-03 12:46:29 -06:00
Loïc Pottier
479f5a74a3
py-ipdb: updating versions (#35654)
* py-ipdb: updating versions

Signed-off-by: Loïc Pottier <pottier1@llnl.gov>

* py-ipdb: fixing versions problem and deleting 10.1 which is too old for Python > 3.6

Signed-off-by: Loïc Pottier <pottier1@llnl.gov>

* Update var/spack/repos/builtin/packages/py-ipdb/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-ipdb: removed useless dependencies

Signed-off-by: Loïc Pottier <pottier1@llnl.gov>

* Update var/spack/repos/builtin/packages/py-ipdb/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-ipdb/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-ipdb: missing @

Signed-off-by: Loïc Pottier <pottier1@llnl.gov>

* Update var/spack/repos/builtin/packages/py-ipdb/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Signed-off-by: Loïc Pottier <pottier1@llnl.gov>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-03-03 05:28:40 -05:00
kwryankrattiger
895886959f
CI: Fix timeout for VisIt and ParaView (#35787)
ref. #35400
2023-03-03 09:13:14 +01:00
Jean Luca Bez
0bdb0b07fd
update github URL (#35789) 2023-03-03 00:23:23 -05:00
Ishaan Desai
817b59900a
Update pyprecice v2.5.0.2 (#35788)
* Update versions 2.5.0.0 and 2.5.0.1

* Applying review changes

* Updating incorrect checksum for v2.4.0.0

* Add for loop to define depends_on for preCICE versions and bindings versions

* Formatting

* Missing comma

* Add pyprecice v2.5.0.2
2023-03-03 00:19:17 -05:00
Erik Heeren
2ddd66ca48
py-jupyter-server-proxy: fix dependency condition (#35784)
Too much copypasta
2023-03-03 00:18:31 -05:00
H. Joe Lee
7ddd796f89
scons: add a new version (#35652)
* scons: add a new version

* scons: address @adamjstewart review
2023-03-02 15:14:59 -06:00
downloadico
1e2ef16b39
Add e3sm scorpio (#35794)
* e3sm-scorpio: add e3sm-scorpio package
   This is the Scorpio package from the e3sm.org site.
* fixed style errors
* removed unneeded dependency on cmake
2023-03-02 15:48:55 -05:00
Adam J. Stewart
77355fd348
py-nbstripout: add new package (#35786) 2023-03-02 10:47:48 -07:00