Commit graph

15653 commits

Author SHA1 Message Date
Michael Kuhn
41907639c4
py-scipy: Fix build with gcc@10: (#16687) 2020-05-16 20:55:20 -05:00
Justin S
babfd144ad
py-fastcluster: new package at 1.1.26 (#16588)
* py-fastcluster: new package at 1.1.26

* py-fastcluster: add py-setuptools dep
2020-05-16 16:12:50 -05:00
Amjad Kotobi
5912b8c7cd
r-yaimpute: New package (#16658) 2020-05-16 16:07:58 -05:00
Amjad Kotobi
f71768b1d6
r-envstats: New package (#16659) 2020-05-16 16:07:10 -05:00
h-denpo
a97ce63218
New package frontistr (#16660)
"""Open-Source Large-Scale Parallel FEM Program for
        Nonlinear Structural Analysis"""
2020-05-16 16:06:25 -05:00
Amjad Kotobi
6ca1052999
r-spatstat-utils : New package (#16663) 2020-05-16 16:03:49 -05:00
Mark W. Krentel
b858eebc51
hpctoolkit: add dependency on gotcha (#16670) 2020-05-16 15:59:33 -05:00
Paul
32238391a9
Add Go versions 1.14.3 and 1.13.11 (#16673) 2020-05-16 15:55:51 -05:00
darmac
110b15f20e
Add new package: hiredis (#16679) 2020-05-16 15:51:01 -05:00
darmac
b6498c44af
Add new package: guacamole-server (#16680) 2020-05-16 15:50:24 -05:00
TZ
2ebadbc267
intel-mpi: add libfabrics directory to SPACK_COMPILER_EXTRA_RPATHS (#15214)
workaround for not finding an appropriate libfabrics.so with Intel
MPI 2019+. Fixes #11140 and #12493
2020-05-16 10:40:40 -05:00
Amjad Kotobi
983f05ac41
r-polspline: new package (#16648)
* r-polspline: new package

* r-polspline: updated urls
2020-05-16 09:07:34 -05:00
Omar Padron
97d7ef678d
fix catalyst so that it doesn't depend on a particular spelling of python (#16667) 2020-05-15 15:11:32 -04:00
Greg Becker
32a9adcf60
modules: use projections format for naming schemes (#16629)
* update tcl naming_scheme to use projections

* add projections to lmod modules
2020-05-15 11:12:52 -07:00
Stephen Hudson
955a3db206
py-petsc4py: allow ~mpi variant (#16595)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-05-15 15:14:06 +02:00
Michael Kuhn
90e15cae16
likwid: fix build with gcc@10: (#16641) 2020-05-15 13:23:57 +02:00
Michael Kuhn
154504da71
binutils: fix build with gcc@10: (#16661)
The issue seems to be fixed in the development version already.
2020-05-15 13:13:04 +02:00
Scott Wittenburg
e0572a7d96 Pipelines: Support DAG scheduling and dynamic child pipelines
This change also adds a code path through the spack ci pipelines
infrastructure which supports PR testing on the Spack repository.
Gitlab pipelines run as a result of a PR (either creation or pushing
to a PR branch) will only verify that the packages in the environment
build without error.  When the PR branch is merged to develop,
another pipeline will run which results in the generated binaries
getting pushed to the binary mirror.
2020-05-14 21:11:07 -07:00
Scott Wittenburg
47b3dda1aa Support os-specific $padding in config:install_tree
Providing only $padding or ${padding} results in an attempt to
substitute a padding of maximum system path length, while leaving
room for the parts of the install path spack generates.  Providing
$padding-<len> or ${padding-<len>} simply substitutes padding of
the specified length.
2020-05-14 21:11:07 -07:00
Toyohisa Kameyama
ea818caca3
namd: build on aarch64. (#16639) 2020-05-14 20:17:53 -05:00
Robert Blake
b987444871
Fixing the build directory for cardioid. (#16640)
* Fixing the build directory for cardioid.

* These imports are no longer needed due to deletions.

Co-authored-by: Robert Blake <rob.c.blake.3@gmail.com>
2020-05-14 20:16:55 -05:00
Michael Kuhn
5875bc6d6b
scorep: Fix build with gcc@10: (#16642) 2020-05-14 20:10:58 -05:00
Andrew W Elble
e21b4731a9
lammps: set LAMMPS_POTENTIALS in the runtime environment (#16643)
so lammps can find the installed potential files
2020-05-14 20:09:41 -05:00
Jen Herting
b562059d2a
New package: maloc (#16631)
* [maloc] created template

* [maloc] added some build dependencies

* [maloc] added homepage and description

* [maloc] added doc variant in an attempt to disable documentation. Still builds doc though... at least when there is a system doxygen found. Having doxygen being a dependency here can bring python in and cause issues for dependents, even when listed as only a build dependency. Maybe this is a bug?

* [maloc] flake8 and fixme removal

* [maloc] shorted description
2020-05-14 20:06:21 -05:00
Andrew W Elble
8c025324af
ucx: cuda / gdrcopy variants (#16605)
picking up where #15724 left off.
2020-05-14 20:04:06 -05:00
健美猞猁
0ed2fa3b9b
miniforge3: a new package. (#16644) 2020-05-14 19:50:11 -05:00
Michael Kuhn
c168e1b85e
at-spi2-core: Add 2.36.0 (#16645)
The pkg-config file of newer versions of at-spi2-core includes
dependencies for xtst, recordproto, inputproto and fixesproto, so they
have to be available at runtime as well.
2020-05-14 19:49:02 -05:00
Michael Kuhn
670a5e8766
atk: Add 2.36.0 (#16646) 2020-05-14 19:48:21 -05:00
Michael Kuhn
232aa9ff2e
at-spi2-atk: Add 2.34.2 (#16647) 2020-05-14 19:47:55 -05:00
Amjad Kotobi
0844e56d6d
r-hmisc: new version and updated dependency (#16649) 2020-05-14 19:46:02 -05:00
Amjad Kotobi
1eb5a12019
r-survival: new version and updated dependency (#16650) 2020-05-14 19:44:35 -05:00
Greg Becker
445cae5c81
Feature: Allow lmod configuration to set core specs (#16517)
Packages built with lmod core_compiler are placed in `Core`.

Other packages may belong in `Core`. For example, python may be built with a proprietary compiler for performance, but belong on the `Core` directory.

With this PR, lmod config can include a `core_specs` list. Any package that satisfies a spec in that list is placed in `Core`, regardless of its compiler or dependencies.
2020-05-14 11:27:37 -07:00
Michael Kuhn
20b3e41831
adios2: Fix build with gcc@10: (#16570) 2020-05-13 19:46:13 -07:00
Nathan
48a35409e0
Spack Package for ns-3 (#16630)
* Adding ns3 spack

* Format and cleanup of ns3 spack package

* Removing comments and fixing boost variant

* Fixing formating
2020-05-13 21:16:17 -05:00
Adam J. Stewart
bc948c4418
py-horovod: add new version (#16635) 2020-05-13 17:52:27 -05:00
Nathan
c50b586e06
Helics: add python variant (#16625)
* Adding varient for python interface in HELICS

* Append python interface to pythonpath

* cleaning up blank lines

* Update var/spack/repos/builtin/packages/helics/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-05-13 17:25:07 -05:00
Greg Becker
7411fe2d43
cmake build system: filter system paths from rpaths (#16612) 2020-05-13 14:31:33 -07:00
Ben Bergen
37e307e8cd
Added alias and bash completion for spacktivate (#16472) 2020-05-13 12:02:38 -06:00
Nick Booher
f294c264a1
revbayes: Update checksum (#16628) 2020-05-13 12:54:21 -05:00
Toyohisa Kameyama
66b896d286
conda4aarch64:New Package. (#16617) 2020-05-13 12:49:42 -05:00
Michael Kuhn
a9ee4da670
ncl: Fix build with gcc@10: (#16624) 2020-05-13 12:45:12 -05:00
Amjad Kotobi
9b8082ecf3
r-exactextractr: new package (#16626) 2020-05-13 12:42:16 -05:00
Nichols A. Romero
fa57f1da29
QE Update May 2020 (#16627)
* Clarify comments about QMCPACK-to-QE converter.

* Allow hdf5=serial with QE 6.4.1 + qmcpack, but apply filter_file.

* Ammend comments about the use of the filter_file.
2020-05-13 12:41:16 -05:00
lpritch-lanl
043d507540
py-pint: added versions up to v0.11 (#16537)
Co-authored-by: Lori Pritchett-Sheats <lpritch@pn2002926.lanl.gov>
2020-05-13 16:47:01 +02:00
Michael Kuhn
308f016f31
parallel-netcdf: fix build with gcc@10: (#16620) 2020-05-13 16:44:50 +02:00
Amjad Kotobi
f6fbf8b8d3
r-xml2: new version & updated dependencies (#16604)
* r-xml2: new version & updated dependencies

* r-xml2: updated dependencies
2020-05-13 09:22:53 -05:00
Tomoki, Karatsu
a740c361cd
ppopen-appl-fdm: added support to Fujitsu compilers. (#16616) 2020-05-13 15:10:07 +02:00
Toyohisa Kameyama
4777284f08
charmpp: support for aarch64. (#16619) 2020-05-13 15:06:25 +02:00
Michael Kuhn
b4052eb3b8
tcsh: fix build with gcc@10: (#16621) 2020-05-13 14:57:12 +02:00
Michael Kuhn
aaf3388cfe
esmf: fix build with gcc@10: (#16622) 2020-05-13 14:53:49 +02:00