Commit graph

22097 commits

Author SHA1 Message Date
Ryan S. Elliott
67874420c7
bump openkim-models to 2021.01.28 (#21637) 2021-02-16 11:01:06 -08:00
Chuck Atkins
2870cc4c92
Add RHEL8 Universal Base Image with platform-python to CI unit tests (#21655) 2021-02-16 13:49:05 -05:00
Michael Kuhn
c8406bd303
enzo: new package (#21634) 2021-02-16 10:42:01 -08:00
Andrew W Elble
0107d71b93
py-horovod: new versions (#21681)
* py-horovod: new versions

* 0.21.3

* dep changes

* fixes
2021-02-16 18:40:53 +00:00
Martin Pokorny
95ea54103f
Remove minimum version for cfitsio dependency (#21630)
The actual, documented minimum version of the cfitsio dependency,
v3.181, is now neither available for (easy) download from NASA, nor as
a Spack package. No upper bound on version number exists (at this time).
2021-02-16 10:17:16 -08:00
Sergey Kosukhin
7538444a03
NAG compiler: disable forcing RPATH/RUNPATH (#21701) 2021-02-16 18:31:51 +01:00
Harmen Stoppels
145a435100
Add hfp as a maintainer (#21671) 2021-02-16 11:23:01 -06:00
Scott Wittenburg
428f831899
Pipelines: DAG Pruning (#20435)
Pipelines: DAG pruning

During the pipeline generation staging process we check each spec against all configured mirrors to determine whether it is up to date on any of the mirrors.  By default, and with the --prune-dag argument to "spack ci generate", any spec already up to date on at least one remote mirror is omitted from the generated pipeline.  To generate jobs for up to date specs instead of omitting them, use the --no-prune-dag argument.  To speed up the pipeline generation process, pass the --check-index-only argument.  This will cause spack to check only remote buildcache indices and avoid directly fetching any spec.yaml files from mirrors.  The drawback is that if the remote buildcache index is out of date, spec rebuild jobs may be scheduled unnecessarily.

This change removes the final-stage-rebuild-index block from gitlab-ci section of spack.yaml.  Now rebuilding the buildcache index of the mirror specified in the spack.yaml is the default, unless "rebuild-index: False" is set.  Spack assigns the generated rebuild-index job runner attributes from an optional new "service-job-attributes" block, which is also used as the source of runner attributes for another generated non-build job, a no-op job, which spack generates to avoid gitlab errors when DAG pruning results in empty pipelines.
2021-02-16 09:12:37 -07:00
Glenn Johnson
60ee4199f5
Add manual_download attribute to packages (#21687)
Add `manual_download = True` to packages that need to do manual
downloads but do not have the `manual_download attribute set. This
provides a message when installing these packages rather than a generic
fetch error.
2021-02-16 17:10:19 +01:00
Glenn Johnson
8456a73a87
Add manual_download = True to genemark-et package (#21686) 2021-02-16 17:09:22 +01:00
ketsubouchi
04cff1136b
cqrlib: new package (#21532) 2021-02-16 17:03:48 +01:00
iarspider
cec1f9bd47
rsync: add support for external detection (#21669) 2021-02-16 16:57:55 +01:00
iarspider
d2a0235d4b
gruff: add support for external detection (#21646) 2021-02-16 16:57:02 +01:00
vvolkl
c0490ab30f
add hep tags to some newly added hep packages (#21653) 2021-02-16 16:34:14 +01:00
Mark W. Krentel
bd9289f99d
hpcviewer: add versions 2020.12 and 2021.01 (#21659)
Add versions 2020.12 and 2021.01.  The viewer and trace viewer are now
integrated into a single program and one tar ball.  Now available on
arm/aarch64 and now uses Java 11.
2021-02-16 16:33:54 +01:00
Andrew W Elble
6b521a3a5b
qcachegrind/valgrind: new versions (#21673) 2021-02-16 16:32:45 +01:00
Michael Kuhn
7f8b62620d
meson: add 0.57.0 (#21690) 2021-02-16 16:27:31 +01:00
Sergey Kosukhin
3cc2d91638
cdo: update PROJ dependency constraints (#21700) 2021-02-16 16:25:17 +01:00
Massimiliano Culpo
ca69e7cd43
Add .idea folder to the list of ignored files (#21685) 2021-02-16 07:32:27 -06:00
Olivier Cessenat
e63b34ff77
New Package: hevea (#21616) 2021-02-16 11:49:23 +00:00
Sebastian Schmitt
bc9baac720
Update package for Arbor 0.5 (#21565) 2021-02-16 09:30:20 +00:00
Mark W. Krentel
f9831b5f65
hpctoolkit: pre-release update (#21613)
Update some things in hpctoolkit to prepare for a 2021.02.x release:

  1. allow binutils to be built with +nls.
  2. require libmonitor to be built with +dlopen.
  3. allow rocm in more than just develop branch.
  4. remove some conflicting setenv's in hpctoolkit module.
2021-02-16 08:47:37 +01:00
Desmond Orton
c1cc4ab1b8
New R Package: Chipseq@1.40.0 (#21689) 2021-02-15 16:36:44 -08:00
Michael Kuhn
c805b168d3
glib: add 2.66.7 (#21691) 2021-02-15 16:29:39 -08:00
a-saitoh-fj
e3bf23e292
py-dask: add v2020.12.0 (#20541) 2021-02-15 17:32:17 +00:00
Phil Carns
c55406abdf
deprecate margo package (all versions) (#21680)
- this is maintained in the "mochi-margo" package now instead
2021-02-15 11:16:12 -06:00
eugeneswalker
e2c16bfe22
llvm-doe: add +flang variant (#21610) 2021-02-15 11:13:32 -06:00
Tomoyasu Nojiri
6e18188d43
fujitsu-fftw: Add version 1.0.0 (#21664) 2021-02-15 10:26:21 +01:00
Tomoki, Karatsu
b6e2e731bc
py-numpy: check if execute commands are feasible. (#21507)
* py-numpy: check if execute commands are feasible.

* Apply patch to all versions.
2021-02-14 12:22:48 -06:00
Michael Kuhn
155bbab44b
py-questionary: new package (#21658) 2021-02-14 11:46:52 -06:00
Michael Kuhn
b111ef48da
py-prompt-toolkit: add 3.0.16 (#21657) 2021-02-14 08:36:18 -06:00
Tamara Dahlgren
851490bd54
Correct the reference to the staged examples files (#21557) 2021-02-13 08:14:38 -08:00
Jen Herting
871fdc12b6
New package: py-hyperopt (#21603)
* py-hyperopt for ...

* updates to hyperopt

* updates for mypy

* removed versions

* removed url

* fixed checksum

* fixed version of pyspark

* added 3:

* removed pyspark constraints and untested versions

* [py-hyperopt] removed version 0.2.4

* [py-hyperopt] added vairants spark, mongo, and atpe

* [py-hyperopt] added dependency on py-lightgbm

Co-authored-by: Sid Pendelberry <sid@rit.edu>
2021-02-12 20:13:19 +00:00
Jen Herting
4649a251e6
New package: py-lightgbm (#21649)
* [py-lightgbm] created template

* [py-lightgbm] added homepage and description

* [py-lightgbm] added dependencies

* [py-lightgbm] build requires cmake

* [py-lightgbm] added mpi variant

* [py-lightgbm] removed fixmes

* [py-lightgbm] removed more fixmes
2021-02-12 13:34:08 -06:00
Chuck Atkins
5a771bc8ad
Introduce a SPACK_PYTHON environment variable (#21222)
The SPACK_PYTHON environment variable can be set to a python interpreter to be
used by the spack command.  This allows the spack command itself to use a
consistent and separate interpreter from whatever python might be used for package
building.
2021-02-12 10:52:44 -08:00
ketsubouchi
7add9de2e5
neartree: new package at v3.1 (#21534) 2021-02-12 19:00:54 +01:00
ketsubouchi
1e7fe89e1d
cvector: new package at v1.0.3 (#21533) 2021-02-12 17:07:25 +01:00
shanedsnyder
ad0ba8ce68
darshan-util" add "shared" variant (#21640) 2021-02-12 17:06:26 +01:00
Olivier Cessenat
ca7d1c29bc
ocamlbuild: new package (#21559) 2021-02-12 07:42:43 -06:00
iarspider
5d9c17d2bf
popt: depend on virtual iconv package (#21645) 2021-02-12 10:58:20 +00:00
AMD Toolchain Support
b53bf7cefd
xpmem: Added RHEL 8.3 support (#21563) 2021-02-12 11:01:55 +01:00
Cyrus Harrison
13852986a4
conduit: add v0.7.1 (#21639) 2021-02-12 10:35:14 +01:00
Ryan S. Elliott
f92580240e
Add support for KIM package in LAMMPS (#21638) 2021-02-11 19:10:45 -07:00
Tom Epperly
58b9c6dadd
Fix mumps compilation with gcc@10 (i.e., gfortran) (#21631)
* add new flag when compiling mumps with %gcc@10.

* Fix style

* Try to fix formatting

* Use flag_handler approach suggested by @michaelkuhn
	in the PR review.

* Delete former approach

* Another style issue

* Add another space

* More fixes
2021-02-12 01:14:09 +00:00
Daryl W. Grunau
0724467ad2
caliper: version upgrade to 2.5.0 (#21606)
Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
2021-02-11 20:34:22 +01:00
Dr. Christian Tacke
437d92155d
mesa18: Do not deprecate for now (#21627)
We still need mesa18 for some of our builds.
Those builds require python@2, normal mesa only works with
python@3.

* Remove the deprecation tag
* Add myself as a maintainer: I volunteer to help with this
  package for the time being.
* There is only one version, no need to prefer it.
2021-02-11 19:12:38 +00:00
Massimiliano Culpo
113073ceed
unit test: refactored bindist.py (#21497)
Modifications:
- Make use of SpackCommand objects wherever possible
- Deduplicated code when possible
- Moved cleaning of mirrors to fixtures
- Ensure mock configuration has a clear initialization order
2021-02-11 10:29:56 -08:00
Jen Herting
0dcb0d885f
[py-py4j] added version 0.10.9 (#21625) 2021-02-11 18:16:38 +00:00
Jen Herting
f7a05e0c61
[py-pyspark] new version and limited python for old versions (#21602)
* fixed install with ver 3 and python 3.0

* replaced @3 with @2.999

* [py-pyspark] added version requirements for py-py4j

* [py-pyspark] all versions require at least version 2.7 of python

* [py-pyspark] fixed comma syntax

Co-authored-by: Sid Pendelberry <sid@rit.edu>
2021-02-11 11:16:29 -06:00
vvolkl
3d6e9e172d
genfit: set the ROOT prefix when building genfit (#21589)
Co-authored-by: lintao <lintao51@gmail.com>
2021-02-11 17:03:20 +01:00