Commit graph

22097 commits

Author SHA1 Message Date
Adam J. Stewart
88d24150e6
py-scipy: add v1.7.1 (#25187) 2021-08-03 14:00:14 +02:00
Axel Huebl
420a8c2eb2
openPMD-api: make v0.13.4 preferred (#25188)
Keep the previous patch release as preferred as we investigate
a few regressions.
2021-08-03 13:52:35 +02:00
AMD Toolchain Support
5698850dc4
aocc 3.1.0: fix version detection for v3.1.0 (#25084) 2021-08-03 13:48:19 +02:00
Tom Payerle
c7e8bdf9cf
intel-tbb: allow compilation with nvhpc (#25044)
These are the versions tested (and successfully patched) against
intel-tbb.nvhpc-remove-flags.2017.patch: @2017, @2017.8, @2018, @2018.6
intel-tbb.nvhpc-remove-flags.2019.patch: @2019
intel-tbb.nvhpc-remove-flags.2019.1.patch: @2019.[1-6]
intel-tbb.nvhpc-remove-flags.2019.7.patch: @2019.[7-8]
intel-tbb.nvhpc-remove-flags.2019.9.patch: @2019.9, 2020.[0-3]

The intel-tbb.nvhpc-version-script-fix.2017.patch was tested and
applied successfully against all of the versions above.
2021-08-03 13:35:31 +02:00
John Vandenberg
d33d9d1f03
sbp: add new package (#25194) 2021-08-03 13:25:21 +02:00
Carlos Bederián
a4698f6122
aocc: add v3.1.0 (#25193) 2021-08-03 03:10:31 -07:00
Todd Gamblin
fc840c904b
executable: filter long paths from debug output (#25168)
Long, padded install paths can get to be very long in the verbose install
output. This has to be filtered out by the Executable class, as it
generates these debug messages.

- [x] add ability to filter paths from Executable output.
- [x] add a context manager that can enable path filtering
- [x] make `build_process` in `installer.py`

This should hopefully allow us to see most of the build output in
Gitlab pipeline builds again.
2021-08-03 10:00:33 +00:00
Tim Haines
e477101345
PAPI: add version 'master' (#25192)
This is needed for testing with the ECP Dev Tools SDK.

Co-authored-by: Tim Haines <thaines@cs.wisc.edu>
2021-08-03 02:34:32 -07:00
Adam J. Stewart
171001ca84
py-fiona: add v1.8.20 (#25196) 2021-08-03 11:20:43 +02:00
Rémi Lacroix
6fa803a38d
DIAMOND: add v2.0.11 (#25198) 2021-08-03 10:38:54 +02:00
Todd Gamblin
cf8d1b0387
refactor: convert build_process to use BuildProcessInstaller (#25167)
`build_process` has been around a long time but it's become a very large,
unwieldy method. It's hard to work with because it has a lot of local
variables that need to persist across all of the code.

- [x] To address this, convert it its own `BuildInfoProcess` class.
- [x] Start breaking the method apart by factoring out the main
      installation logic into its own function.
2021-08-03 10:24:24 +02:00
Todd Gamblin
0a0338ddfa bugfix: ensure all bootstrap context managers are exception-safe
When context managers are used to save and restore values, we need to remember
to use try/finally around the yield in case an exception is thrown.  Otherwise,
the cleanup will be skipped.
2021-08-03 10:07:11 +02:00
Todd Gamblin
693c4d8f3a spack style: improve tests for failure cases
This fixes the bad bootstrap test for spack style, and it refines the
asserrtions on other failure cases.
2021-08-03 10:07:11 +02:00
Dylan Simon
507d3c841c
don't spin writer daemon when < /dev/null (#25170) 2021-08-02 21:39:38 -07:00
Erik Schnetter
2dd2a5b167
rnpletal: New package (#25154)
* rnpletal: New package

RNPL is an old package that is still used today by my collaborators, but doesn't see any development any more. I'm creating a Spack package merely to make it easier to install it on various systems. The code is not modern (C without prototypes – yes, that used to be a thing), and a large diff modernizes the code to make it palatable to modern C and Fortran compilers.

RNPL contains several sub-package. The current Spack package builds only the main one.

* rnpletal: Remove unused import

* Convert into AutotoolsPackage

* Don't check for "shared" variant

* rnpletal: Change "version" to `develop`

* rnpletal: Use existing `configure` function
2021-08-02 14:01:45 -07:00
Ali Ahmed
a60e3f80f6
[curl] Fix brotli option flag (#25166)
Co-authored-by: Ali Ahmed <alia@splunk.com>
2021-08-02 12:46:56 -07:00
Adam J. Stewart
6d810cb2e7
Docs: add link to source code (#25088) 2021-08-02 12:36:40 -07:00
Satish Balay
413919be1f
petsc: add variants strumpack, scalapack (#25058)
strumpack: switch defaut to +shared
2021-08-02 13:48:33 -05:00
Sreenivasa Murthy Kolam
73a65dc370
modfiy hip-rocclr references for 4.1.0 and 4.2.0 releases (#24868) 2021-08-02 11:16:47 -07:00
Frank Willmore
0df067e64f
adjust for erroneous detection of nvc as gcc (#24915)
* adjust for erroneous detection of nvc as gcc

adjust for erroneous detection of nvc as gcc when it is built with gcc

* add missing parenthesis :/

* fix trailing whitespace

* re-work hdf5 patch for nvc to make it more general

* flake8 fixes

* Render as comment

Render intended note as a comment rather than logical constraint

Co-authored-by: Frank Willmore <willmore@anl.gov>
2021-08-02 11:13:32 -07:00
Tamara Dahlgren
413ea10e78
ci: Add RADIUSS stack to cloud CI (#23922)
Add RADIUSS software stack to gitlab PR testing pipelines
2021-08-02 10:19:35 -06:00
Fabian Brandt
71cd303362
Bump version 9.0 (#25039) 2021-08-02 15:56:55 +00:00
Harmen Stoppels
db08ce6105
Bump cmake (#25183) 2021-08-02 08:22:08 -07:00
Harmen Stoppels
ac8521e9b3
Do not issue a warning for a missing source id when installing from local sources (#24960) 2021-08-02 14:17:41 +02:00
Mikael Simberg
d628e3ba5c
Add maintainers for gperftools (#25156) 2021-08-02 13:46:38 +02:00
loulawrence
be3e6a0e9b
document config option "url_fetch_method" (#24638)
- Change config from the undocumented `use_curl: true/false` to `url_fetch_method: urllib/curl`.
- Documentation of `url_fetch_method` in `defaults/config.yaml`
- Default fetch option explicitly set to `urllib` for users who may not have curl on their system

To upgrade from `use_curl` to `url_fetch_method`, run `spack config update config`
2021-08-02 10:30:25 +02:00
Wouter Deconinck
cd8f7d844d
[imlib2] depends_on pkg-config, type = build; and new versions (#25030) 2021-08-02 09:53:19 +02:00
s1913388
2a20943f9b
Optimised Cloverleaf3D (#24920) 2021-08-02 09:40:43 +02:00
Sreenivasa Murthy Kolam
437c1e438e
add MIOPEN_AMDGCN_ASSEMBLER to cmake args (#25159) 2021-08-02 09:38:34 +02:00
Weiqun Zhang
55e218649a
amrex: 21.08 (#25175) 2021-08-01 15:47:48 -07:00
Erik Schnetter
f9703c1c9f
kadath: New package (#25162)
* kadath: New package

* Update var/spack/repos/builtin/packages/kadath/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/kadath/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/kadath/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/kadath/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* kadath: Add description to MPI variant

* kadath: Add empty line

* kadath: Add variant "codes=none" to avoid empty default

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-08-01 19:22:07 +00:00
Iman Hosseini
861abb512e
laghos: add variant with compiler optimization (#24910)
* add variant with compiler optimization

Update package.py to include variant with compiler optimization, benchmarked at A-HUG hackaton to improve major kernel time by roughly 3%.

* fix style

* Update var/spack/repos/builtin/packages/laghos/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-08-01 18:58:24 +00:00
Jen Herting
8867827a89
[py-asteval] added version 0.9.25 (#25107)
* [py-asteval] added version 0.9.25

* [py-asteval] 0.9.25 requires py-setuptools-scm
2021-08-01 11:43:58 -05:00
iarspider
a9bc118031
[giflib] Set LIBVER and LIBMAJOR when installing (#25173)
* Set LIBVER and LIBMAJOR

* Typo fix

* Fix 2

* Fix #3
2021-08-01 11:37:31 -05:00
Todd Gamblin
ab5954520f
spack diff: make output order deterministic (#25169)
The output order for `spack diff` is nondeterministic for larger diffs -- if you
ran it several times it will not put the fields in the spec in the same order on
successive invocations.

This makes a few fixes to `spack diff`:

- [x] Implement the change discussed in https://github.com/spack/spack/pull/22283#discussion_r598337448
      to make `AspFunction` comparable in and of itself and to eliminate the need for `to_tuple()`

- [x] Sort the lists of diff properties so that the output is always in the same order.

- [x] Make the output for different fields the same as what we use in the solver. Previously, we
      would use `Type(value)` for non-string values and `value` for strings.  Now we just use
      the value.  So the output looks a little cleaner:

      ```
      == Old ==========================        == New ====================
      @@ node_target @@                        @@ node_target @@
      -  gdbm Target(x86_64)                   -  gdbm x86_64
      +  zlib Target(skylake)                  +  zlib skylake
      @@ variant_value @@                      @@ variant_value @@
      -  ncurses symlinks bool(False)          -  ncurses symlinks False
      +  zlib optimize bool(True)              +  zlib optimize True
      @@ version @@                            @@ version @@
      -  gdbm Version(1.18.1)                  -  gdbm 1.18.1
      +  zlib Version(1.2.11)                  +  zlib 1.2.11
      @@ node_os @@                            @@ node_os @@
      -  gdbm catalina                         -  gdbm catalina
      +  zlib catalina                         +  zlib catalina
      ```

I suppose if we want to use `repr()` in the output we could do that and could be
consistent but we don't do that elsewhere -- the types of things in Specs are
all stringifiable so the string and the name of the attribute (`version`, `node_os`,
etc.) are sufficient to know what they are.
2021-08-01 05:15:33 +00:00
Erik Schnetter
1e708bdb45
lorene: Install only executables, not unrelated files (#25148)
* lorene: Install only executables, not unrelated files in the same directory

* lorene: Don't determine compile dependencies

The current way doesn't work (cpp misses C++ include paths), and we don't need dependencies anyway.

* lorene: Correct BLAS library names

* lorene: Remove comment
2021-07-31 21:11:34 -05:00
Garth N. Wells
60eef9c0de
Add missing xtl dependency for fenics-basix and py-fenics-basix (#25151) 2021-07-31 21:10:24 -05:00
Erik Schnetter
b5f587bbe0
libjpeg-turbo: New version 2.1.0 (#25153) 2021-07-31 20:59:05 -05:00
gpotter2
b1abfd3ff6
Use the new cool Github templates (#25118)
* Use the new cool github templates

* Add the "mention maintainers" clause

* Fix broken HTML tag

* Minor improvements, missing filenames
2021-07-31 20:44:20 -05:00
Jen Herting
b4c6c11e68
[py-pyarrow] added version 3.0.0 and 4.0.1 (#25161)
* [py-pyarrow] added version 4.0.1

* [py-pyarrow] added version 3.0.0

* [py-pyarrow] updated dependencies for newer versions
2021-07-30 21:16:49 +00:00
Jen Herting
886e94d0ee
[arrow] added versions 3.0.0 and 4.0.1 (#25160)
* [arrow] added version 4.0.1

* [arrow] added version 3.0.0
2021-07-30 20:38:23 +00:00
Scott Wittenburg
de88d2c7cc
CI: capture stdout/stderr output to artifact files (#24401)
Gitlab truncates job trace output (even the complete raw output) at 4MB,
so this change captures it to a file under "user_data" artifacts as well,
to make sure we can debug output from the end of the rebuild job.
2021-07-30 13:24:03 -06:00
Scott Wittenburg
f591e9788d
pipelines: Store details about specs broken on develop (#24637)
When a spec fails to build on `develop`, instead of storing an empty file as the entry in the broken specs list, this change stores the full spec yaml as well as links to the failing  pipeline and job.
2021-07-30 09:11:00 -06:00
Ryan Marcellino
3df1d9062e
add new version of py-dvc (#25152)
Co-authored-by: Cloud User <marcryan@ryanmarcelli001.hzterscemazurawp3xenxzahla.bx.internal.cloudapp.net>
2021-07-30 15:01:56 +00:00
Sebastian Ehlert
771e73dfa4
dftd4: add v3.2.0, v3.1.0 and v3.0.0 (#25145) 2021-07-30 14:56:40 +00:00
Ryan Marcellino
d02d683126
py-fsspec: add v0.9.0 (#25133)
Co-authored-by: Cloud User <marcryan@ryanmarcelli001.hzterscemazurawp3xenxzahla.bx.internal.cloudapp.net>
2021-07-30 12:16:22 +02:00
Ryan Marcellino
3408440991
py-dulwich: add v0.20.21 (#25132)
Co-authored-by: Cloud User <marcryan@ryanmarcelli001.hzterscemazurawp3xenxzahla.bx.internal.cloudapp.net>
2021-07-30 12:15:25 +02:00
Ryan Marcellino
3baac2faac
py-diskcache: add v5.2.1 (#25131)
Co-authored-by: Cloud User <marcryan@ryanmarcelli001.hzterscemazurawp3xenxzahla.bx.internal.cloudapp.net>
2021-07-30 12:14:58 +02:00
Cyrus Harrison
69ce54b86a
fides: add new package (#25128) 2021-07-30 12:14:16 +02:00
Olli Lupton
84613da90a
Add C-Reduce and dependencies. (#25109) 2021-07-30 09:59:06 +00:00