The dependencies needed a little clean up as several dependencies are
only needed for the +X variant. This PR consolidates all of the
dependencies that actually require +X and explicitly disables them when
~X to prevent accidentally picking up system libraries.
- modified the description of the +X variant
- arranges dependencies to group them
- added missing dependency on xz
- removed unneeded dependencies
- freetype
- glib
- set dependencies when +X
- cairo
- jpeg
- libpng
- libtiff
- tcl/tk
- R uses tcl/tk together, so only tk needs to be depended on, and only
when +X
- moved tcl/tk resources to with/without-x test
- added explicit with/without settings for
- cairo
- jpeglib
- libpng
- libtiff
- tcltk
* py-typing: new version, avoid issues with newer versions of python
https://pypi.org/project/typing/
"For package maintainers, it is preferred to use
typing;python_version<"3.5" if your package requires it to support
earlier Python versions."
* update conflict version / more message detail
* change the depends_on, leave a comment suggesting correct usage
The actual, documented minimum version of the cfitsio dependency,
v3.181, is now neither available for (easy) download from NASA, nor as
a Spack package. No upper bound on version number exists (at this time).
Add `manual_download = True` to packages that need to do manual
downloads but do not have the `manual_download attribute set. This
provides a message when installing these packages rather than a generic
fetch error.
Add versions 2020.12 and 2021.01. The viewer and trace viewer are now
integrated into a single program and one tar ball. Now available on
arm/aarch64 and now uses Java 11.
Update some things in hpctoolkit to prepare for a 2021.02.x release:
1. allow binutils to be built with +nls.
2. require libmonitor to be built with +dlopen.
3. allow rocm in more than just develop branch.
4. remove some conflicting setenv's in hpctoolkit module.
* add new flag when compiling mumps with %gcc@10.
* Fix style
* Try to fix formatting
* Use flag_handler approach suggested by @michaelkuhn
in the PR review.
* Delete former approach
* Another style issue
* Add another space
* More fixes
We still need mesa18 for some of our builds.
Those builds require python@2, normal mesa only works with
python@3.
* Remove the deprecation tag
* Add myself as a maintainer: I volunteer to help with this
package for the time being.
* There is only one version, no need to prefer it.
* fixed install with ver 3 and python 3.0
* replaced @3 with @2.999
* [py-pyspark] added version requirements for py-py4j
* [py-pyspark] all versions require at least version 2.7 of python
* [py-pyspark] fixed comma syntax
Co-authored-by: Sid Pendelberry <sid@rit.edu>
The GROMACS package embeds references to its build tool chain.
Use the Spack utilities to make sure these references are correct
outside of the isolated Spack build environment.
cmake was added as a runtime dependency to meson in #20449. This
introduces an unnecessary implicit cmake dependency, which increases
build time for meson considerably. cmake is only one of many methods for
finding dependencies (pkg-config, qmake etc.), which are also not
runtime dependencies of meson. Add cmake as a build dependency to mesa
instead.
* [py-moviepy] created template
* [py-moviepy] added dependencies
* [py-moviepy] removed fixmes, added homepage and description
* [py-moviepy] updated to pypi and updated checksum
* [py-moviepy] added setuptools dependency
* [py-moviepy] more specific version limit
* [py-moviepy] added checksum for version 1.0.1
* [py-moviepy] numpy restriction not nesessary here
* 3DTK: add new package
* Add missing opencv variants
Co-authored-by: Michael Kuhn <michael@ikkoku.de>
* Fix cmake version req, add eigen dep
* Prefer trunk version
* Tell 3dtk where to find eigen
* Fix installation
* Fix installation
Co-authored-by: Michael Kuhn <michael@ikkoku.de>
This PR fixes the case where groff fails to build if the spack install
path is really long. There are a couple of perl scripts that get built,
and used, during the build phase that will fail when the perl
interpreter line is too long. Filtering the lines will not work because
the files don not exist after the configure phase and patching after the
build phase is too late. This PR runs the scripts explicitly with the
spack perl via the $(PERL) variable in the call to the script.
* Procedure to deprecate old versions of software
* Add documentation
* Fix bug in logic
* Update tab completion
* Deprecate legacy packages
* Deprecate old mxnet as well
* More explicit docs
* py-dvc: new package
* Update var/spack/repos/builtin/packages/py-dvc/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* py-dvc: add version dependency for py-networkx
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Clarify relaxed double precision option
This is only intended for use on the Fujitsu PRIMEHPC platform
* Fix typo
* Shorten line to keep linter happy
Added conflict for macsio@1.1~mpi after investigating source code. As of
1.1 tag macsio does not properly guard out MPI commands. This is
verified as corrected in @develop
* mxnet: convert to CMakePackage
* Package isn't installed yet, can't find libs
* Fix bug with GCC 8+ and CUDA 10 on PowerPC
* Add space
* Add patch to fix cmake cuda flags
* Space no longer needed
* Add patch to fix OpenBLAS linking
* Add missing CMake flag
* Fix env set, default to Distribution
* Add new version, patch
* added py-python-benedict recipe
* Update var/spack/repos/builtin/packages/py-python-benedict/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
+ Provide optional variant `pythontools` (default False) that adds a run-time dependency on
`py-matplotlib`.
+ Latest versions require `cmake@3.18:` to support cuda features.
+ Enable a cmake option that forcibly disables qt support. Previously, draco would enable qt
support if it was available in the local build environment (outside of spack).
* graphviz: Remove ghostscript requirement when ~ghostscript
* Add doc variant and patch for 2.44.1
* Patch does not apply
* Update graphviz versions, using archives rather than git hash
* Complete implementation of doc variant
* Fix typo
This commit adds an option to the `external find`
command that allows it to search by tags. In this
way group of executables with common purposes can
be grouped under a single name and a simple command
can be used to detect all of them.
As an example introduce the 'build-tools' tag to
search for common development tools on a system
* add to LD_LIBRARY_PATH so that it finds libimf.so
* amrex: fix handling of CUDA arch (#20786)
* amrex: fix handling of CUDA arch
* amrex: fix style
* amrex: fix bug
* Update var/spack/repos/builtin/packages/amrex/package.py
* Update var/spack/repos/builtin/packages/amrex/package.py
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
* ecp-data-vis-sdk: Combine the vis and io SDK packages (#20737)
This better enables the collective set to be deployed togethor satisfying
eachothers dependencies
* r-sf: fix dependency error (#20898)
* improve documentation for Rocm (hip amd builds) (#20812)
* improve documentation
* astyle: Fix makefile for install parameter (#20899)
* llvm-doe: added new package (#20719)
The package contains duplicated code from llvm/package.py,
will supersede solve.
* r-e1071: added v1.7-4 (#20891)
* r-diffusionmap: added v1.2.0 (#20881)
* r-covr: added v3.5.1 (#20868)
* r-class: added v7.3-17 (#20856)
* py-h5py: HDF5_DIR is needed for ~mpi too (#20905)
For the `~mpi` variant, the environment variable `HDF5_DIR` is still required. I moved this command out of the `+mpi` conditional.
* py-hovorod: fix typo on variant name in conflicts directive (#20906)
* fujitsu-fftw: Add new package (#20824)
* pocl: added v1.6 (#20932)
Made version 1.5 or lower conflicts with a64fx.
* PCL: add new package (#20933)
* r-rle: new package (#20916)
Common 'base' and 'stats' methods for 'rle' objects, aiming to make it
possible to treat them transparently as vectors.
* r-ellipsis: added v0.3.1 (#20913)
* libconfig: add build dependency on texinfo (#20930)
* r-flexmix: add v2.3-17 (#20924)
* r-fitdistrplus: add v1.1-3 (#20923)
* r-fit-models: add v0.64 (#20922)
* r-fields: add v11.6 (#20921)
* r-fftwtools: add v0.9-9 (#20920)
* r-farver: add v2.0.3 (#20919)
* r-expm: add v0.999-6 (#20918)
* cln: add build dependency on texinfo (#20928)
* r-expint: add v0.1-6 (#20917)
* r-envstats: add v2.4.0 (#20915)
* r-energy: add v1.7-7 (#20914)
* r-ellipse: add v0.4.2 (#20912)
* py-fiscalyear: add v0.3.0 (#20911)
* r-ecp: add v3.1.3 (#20910)
* r-plotmo: add v3.6.0 (#20909)
* Improve gcc detection in llvm. (#20189)
Co-authored-by: Tom Scogland <tom.scogland@gmail.com>
Co-authored-by: Thomas Green <ca-tgreen@gw4a64fxlogin00.head.gw4.metoffice.gov.uk>
* hatchet: updated urls (#20908)
* py-anuga: add new package (#20782)
* libvips: added v8.10.5 (#20902)
* libzmq: add platform conditions to libbsd dependency (#20893)
* r-dtw: add v1.22-3 (#20890)
* r-dt: add v0.17 (#20889)
* r-dosnow: add v1.0.19 (#20888)
* add version 1.0.16 to r-doparallel (#20886)
* add version 1.3.7 to r-domc (#20885)
* add version 0.9-15 to r-diversitree (#20884)
* add version 1.3-3 to r-dismo (#20883)
* add version 0.6.27 to r-digest (#20882)
* add version 1.5 to r-rngtools (#20887)
* add version 1.5.8 to r-dicekriging (#20877)
* add version 1.4.2 to r-httr (#20876)
* add version 1.28 to r-desolve (#20875)
* add version 2.2-5 to r-deoptim (#20874)
* add version 0.2-3 to r-deldir (#20873)
* add version 1.0.0 to r-crul (#20870)
* add version 1.1.0.1 to r-crosstalk (#20869)
* add version 1.0-1 to r-copula (#20867)
* add version 5.0.2 to r-rcppparallel (#20866)
* add version 2.0-1 to r-compositions (#20865)
* add version 0.4.10 to r-rlang (#20796)
* add version 0.3.6 to r-vctrs (#20878)
* amrex: add ROCm support (#20809)
* add version 2.0-0 to r-colorspace (#20864)
* add version 1.3-1 to r-coin (#20863)
* add version 0.19-4 to r-coda (#20862)
* add version 1.3.7 to r-clustergeneration (#20861)
* add version 0.3-58 to r-clue (#20860)
* add version 0.7.1 to r-clipr (#20859)
* add version 2.2.0 to r-cli (#20858)
* add version 0.4-3 to r-classint (#20857)
* add version 0.1.2 to r-globaloptions (#20855)
* add version 2.3-56 to r-chron (#20854)
* add version 0.4.10 to r-checkpoint (#20853)
* add version 2.0.0 to r-checkmate (#20852)
* add version 1.18.1 to r-catools (#20850)
* add version 1.2.2.2 to r-modelmetrics (#20849)
* add version 3.0-4 to r-cardata (#20847)
* add version 1.0.1 to r-caracas (#20846)
* r-lifecycle: new package at v0.2.0 (#20845)
* add version 3.0-10 to r-car (#20844)
* add version 3.4.5 to r-processx (#20843)
* add version 1.5-12.2 to r-cairo (#20842)
* add version 0.2.3 to r-cubist (#20841)
* add version 2.6 to r-rmarkdown (#20838)
* add version 1.2.1 to r-blob (#20819)
* add version 4.0.4 to r-bit (#20818)
* add version 2.4-1 to r-bio3d (#20816)
* add version 0.4.2.3 to r-bibtex (#20815)
* add version 3.1-4 to r-bayesm (#20807)
* add version 1.2.1 to r-backports (#20806)
* add version 2.0.3 to r-argparse (#20805)
* add version 5.4-1 to r-ape (#20804)
* add version 0.8-18 to r-amap (#20803)
* r-pixmap: added new package (#20795)
* zoltan: source code location change (#20787)
* refactor path logic
* added some paths to make compilers and libs discoverable
* add to LD_LIBRARY_PATH so that it finds libimf.so
and cleanup PEP8
* refactor path logic
* adding paths to LIBRARY_PATH so compiler wrappers will find -lmpi
* added vals for CC=icx, CXX=icpx, FC=ifx to generated module
* back out changes to intel-oneapi-mpi, save for separate PR
* Update var/spack/repos/builtin/packages/intel-oneapi-compilers/package.py
path is joined in _ld_library_path()
Co-authored-by: Robert Cohn <rscohn2@gmail.com>
* set absolute paths to icx,icpx,ifx
* dang close parenthesis
Co-authored-by: Robert Cohn <rscohn2@gmail.com>
Co-authored-by: mic84 <mrosso@lbl.gov>
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
Co-authored-by: Chuck Atkins <chuck.atkins@kitware.com>
Co-authored-by: darmac <xiaojun2@hisilicon.com>
Co-authored-by: Danny Taller <66029857+dtaller@users.noreply.github.com>
Co-authored-by: Tomoyasu Nojiri <68096132+t-nojiri@users.noreply.github.com>
Co-authored-by: Shintaro Iwasaki <siwasaki@anl.gov>
Co-authored-by: Glenn Johnson <glenn-johnson@uiowa.edu>
Co-authored-by: Kelly (KT) Thompson <KineticTheory@users.noreply.github.com>
Co-authored-by: Henrique Mendonça <henrique@users.noreply.github.com>
Co-authored-by: h-denpo <57649496+h-denpo@users.noreply.github.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Thomas Green <tomgreen66@hotmail.com>
Co-authored-by: Tom Scogland <tom.scogland@gmail.com>
Co-authored-by: Thomas Green <ca-tgreen@gw4a64fxlogin00.head.gw4.metoffice.gov.uk>
Co-authored-by: Abhinav Bhatele <bhatele@cs.umd.edu>
Co-authored-by: a-saitoh-fj <63334055+a-saitoh-fj@users.noreply.github.com>
Co-authored-by: QuellynSnead <quellyn@lanl.gov>
* py-dictdiffer: fix offline dependencies
* Update var/spack/repos/builtin/packages/py-dictdiffer/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* py-flatten-dict: new recipe
* Update var/spack/repos/builtin/packages/py-flatten-dict/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* py-flatten-dict: fix dependencies
* py-flatten-dict: fix dependency
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* clingo/clingo-bootstrap: added a package with option for bootstrapping clingo
package builds in Release mode
uses GCC options to link libstdc++ and libgcc statically
* clingo-bootstrap: apple-clang options to bootstrap statically on darwin
* clingo: fix the path of the Python interpreter
In case multiple Python versions are in the same prefix
(e.g. when clingo is built against an external Python),
it may happen that the Python used by CMake does not
match the corresponding node in the current spec.
This is fixed here by defining "Python_EXECUTABLE"
properly as a hint to CMake.
* clingo: the commit for "spack" version has been updated.
- add variants for build targets, language bindings, backends
- ensure selected variants are compatible with zfp version
- point to GitHub (not LLNL) tar balls
- add dependencies
- update link to homepage
- add maintainers
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
Patch provided by @Billae
Avoid the following error:
File "/home/danlipsa/projects/spack/lib/spack/llnl/util/tty/log.py", line 768, in _writer_daemon
line = _retry(in_pipe.readline)()
File "/home/danlipsa/projects/spack/lib/spack/llnl/util/tty/log.py", line 830, in wrapped
return function(*args, **kwargs)
File "/usr/lib/python3.8/codecs.py", line 322, in decode
(result, consumed) = self._buffer_decode(data, self.errors, final)
UnicodeDecodeError: 'utf-8' codec can't decode byte 0x97 in position 220: invalid start byte
This PR adds:
1. A patch that fixes a bug in version 2.70
(will be fixed upstream in the next release: https://savannah.gnu.org/support/?110396).
2. A fix for the way we patch shebang in bin/autom4te.in.
For 2, we need to keep the original modification timestamp of the file.
Otherwise, we either get an empty man page for autom4te (versions 2.69 and before)
or a failure at the build time (versions 2.70 and after).
The difference has to do with the update of the missing script: https://git.savannah.gnu.org/cgit/automake.git/commit/lib/missing?id=a22717dffe37f30ef2ad2c355b68c9b3b5e4b8c7
It will take time until developers of Autotools-based packages adjust their scripts
to the new version, therefore, 2.69 is marked as preferred.
