Commit graph

12321 commits

Author SHA1 Message Date
Seth R. Johnson
283f355b10 Update icu4c to version 64.1 (#12429)
Version 60.1 fails to build on linux with clang@7.0.1 and clang@8.0.0:

```
digitlst.cpp:508:9: error: use of undeclared identifier 'freelocale'
        freelocale(gCLocale);
        ^
   clang++     ...  coll.cpp
digitlst.cpp:520:26: error: use of undeclared identifier 'LC_ALL_MASK'
    gCLocale = newlocale(LC_ALL_MASK, "C", (locale_t)0);
                         ^
   clang++     ...  sortkey.cpp
   clang++     ...  bocsu.cpp
   clang++     ...  ucoleitr.cpp
   clang++     ...  ucol.cpp
   clang++     ...  ucol_res.cpp
2 errors generated.
   clang++     ...  ucol_sit.cpp
   clang++     ...  collation.cpp
*** Failed compilation command follows:
----------------------------------------------------------
/projects/spack/lib/spack/env/clang/clang++ -D_REENTRANT
-DU_HAVE_ELF_H=1 -DU_HAVE_ATOMIC=1 -DU_HAVE_STRTOD_L=1
-DU_HAVE_XLOCALE_H=1 -I. -I../common -DU_ATTRIBUTE_DEPRECATED=
-DU_I18N_IMPLEMENTATION -std=c++11 -W -Wall -pedantic -Wpointer-arith
-Wwrite-strings -Wno-long-long -c -DPIC -fPIC -o digitlst.o digitlst.cpp
--- ( rebuild with "make VERBOSE=1 all" to show all parameters )
--------
make[1]: *** [digitlst.o] Error 1
make[1]: *** Waiting for unfinished jobs....
   clang++     ...  collationsettings.cpp
make[1]: Leaving directory
`/build/s3j-spack/spack-stage/spack-stage-k9ba3gqo/spack-src/source/i18n'
make: *** [all-recursive] Error 2
```
2019-08-14 22:54:37 -05:00
Shintaro Iwasaki
ae2ab920fb Update BOLT package (#12423)
* bolt: add new versions

* bolt: add argobots dependency

From this version, BOLT uses an external Argobots, not a builtin one.
2019-08-14 21:40:51 -05:00
Daryl W. Grunau
5346d5e966 Fix skopeo dependencies (#12425) 2019-08-14 19:14:33 -05:00
Daryl W. Grunau
b8ffb1cf7f Fix charliecloud dependencies (#12427) 2019-08-14 19:14:00 -05:00
Cameron Stanavige
226f23bc43 UnifyCR: update dependencies and build options (#12216)
* UnifyCR: update dependencies and build options

This adds some specifics about dependencies and conflicts and adds
additional build options and variants. UnifyCR now also has limited
fortran support.

* Remove debug statements condition on Spack debug

Change debug print statements to now be turned on when the -g cflag
is found in the flags the user sets.
2019-08-14 15:50:10 -07:00
Daryl W. Grunau
9e08c7ff47 Package umoci dependency (#12422)
* bump eospac version

* Revert "bump eospac version"

This reverts commit 835b1f822d8c083f6ab9eb17222c00409e8eb3da.

* umoci depends on go-md2man
2019-08-14 17:35:52 -05:00
Christoph Junghans
41c917b6e6 lammps: add version 20190807 (#12424) 2019-08-14 17:35:24 -05:00
Daryl W. Grunau
0c5f5d4d0d New package: device-mapper (#12406)
* bump eospac version

* Revert "bump eospac version"

This reverts commit 835b1f822d8c083f6ab9eb17222c00409e8eb3da.

* new package: device-mapper

* address comments by @hartzell

* extraneous whitespace

* capitalization

* device-mapper -> lvm2

* unprovide device-mapper

* address comments by @adamjstewart

* address comments by @adamjstewart
2019-08-14 14:54:15 -05:00
Justin S
da21d27712 r-rmutil: new package at 1.1.3 (#12417)
* r-rmutil: new package at 1.1.3

* r-rmutil: use cloud.r-project.org
2019-08-14 14:53:57 -05:00
Daryl W. Grunau
a9845da15f New package: go-md2man (#12397)
* bump eospac version

* Revert "bump eospac version"

This reverts commit 835b1f822d8c083f6ab9eb17222c00409e8eb3da.

* new package: go-md2man

* address comments by @adamjstewart
2019-08-14 12:56:51 -05:00
Adam J. Stewart
0f075b0cc8
NCCL: fix build on older Linux systems (#12415) 2019-08-14 12:34:00 -05:00
Toyohisa Kameyama
e620883a3c masurca: build on arm. (#12416)
* remove -minline-all-stringops when target is arm.
* change int3 to raise(SIGTRAP) when target is arm.
2019-08-14 10:38:50 -05:00
Sinan
3a4a513bed add new package: py-python-magic (#12409)
* add new package: py-python-magic

* tidy up

* Update var/spack/repos/builtin/packages/py-python-magic/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-08-14 10:37:06 -05:00
Adam J. Stewart
2e6b44328a
zstd: fix build linking error (#12413) 2019-08-13 21:09:25 -05:00
Toyohisa Kameyama
c52f8478b2 starce: new version and build on ARM. (#12401)
1. souce URL change to github.
2. Add version 5.1 and 5.2
3. enable build on ARM.
2019-08-13 19:38:45 -05:00
Jordan Ogas
4119886cbc add charliecloud master branch; add dependencies (#12327)
* add master and dependencies

* remove gcc and make

* add variants, make doc and ch-grow dependencies optional

* capitalize description sentence

* move dependencies and variants below version block

* fix typos
2019-08-13 19:37:58 -05:00
Daryl W. Grunau
2c68b7f006 packages/umoci (#12346)
* bump eospac version

* Revert "bump eospac version"

This reverts commit 835b1f822d8c083f6ab9eb17222c00409e8eb3da.

* new package: umoci

* Package -> MakefilePackage

* add missing build phase

* relax expand=False requirement
2019-08-13 19:37:34 -05:00
Sinan
fcf6bb8f45 add new versions (#12393) 2019-08-13 19:35:02 -05:00
Sinan
53e12f66cf add new version (#12394) 2019-08-13 19:34:34 -05:00
Sinan
bb5663701e add new version (#12395) 2019-08-13 19:33:12 -05:00
Toyohisa Kameyama
d752ef38c9 subread: build on ARM. (#12400) 2019-08-13 19:23:52 -05:00
Ricardo Silva
5116312ca2 package/gromacs: simd optimizations autodetection for more versions (#12402)
* gromacs: fix simd detection for pre 2018 versions

* pre 2018 the cmake file was named differently
* fixed up post 2018 patch file which was non pretty

* Trim patch
2019-08-13 19:21:59 -05:00
健美猞猁
5429713eef Add version 2.4.0 for cantera. (#12405) 2019-08-13 19:18:38 -05:00
Gregory Lee
aabdeb9b63 patch opa-psm2 to build with spack wrappers (#12407) 2019-08-13 19:13:21 -05:00
Daryl W. Grunau
c931757d02 Fix package gpgme dependency (#12410)
* bump eospac version

* Revert "bump eospac version"

This reverts commit 835b1f822d8c083f6ab9eb17222c00409e8eb3da.

* build depends on gnupg which provides gpgsm binary
2019-08-13 19:08:50 -05:00
Michael Kuhn
384281bf94 gcc: Add 9.2.0 (#12411) 2019-08-13 19:08:12 -05:00
Peter Scheibel
1f6befabb1
Fix "spack loads" when retrieving upstream modules (#12203)
Fixes #12062

406c791 addressed "spack module load" for upstream modules but not
the "spack module loads" command. This applies the same fixes from
406c791 to "spack module loads".
2019-08-13 11:09:40 -07:00
Tiziano Müller
95fec7adfc CP2K/SIRIUS: add support for building with CUDA, fix CP2K build with MKL (#11418)
* cp2k/sirius: add CUDA support

* cp2k: fix building with MKL

* sirius: make sure to link against Spacks blas/lapack/scalapack
2019-08-13 19:59:08 +02:00
brietzke
68c176998a new package: asagi: create package.py (#11931)
* Create package.py

* applied reviewer suggestions

* Update package.py

* remove CamelCase from variant names

* add comment on why fetching package via git

* found typo in variant to cmake-argumentlist translation

* rename variants to ~nonuma ~nompi to be in sync with cmake-args, refine mpi@3-dependency definition

* Revert "rename variants to ~nonuma ~nompi to be in sync with cmake-args, refine mpi@3-dependency definition"

This reverts commit 58e8cf7d93c5665f0b4b50228946857734716cef.

* remove version-preference
2019-08-13 11:13:41 -05:00
Sinan
bb6ec7fb40 Package/grass: fix iconv linking issue (#12165)
* fix iconv linking issue, package_grass fix linking iconv, add more comments
2019-08-12 13:45:05 -07:00
Owen Solberg
230678367c singularity: update version to 3.3.0 (#12295)
* add checksum for singularity release 3.3.0

* update singularity doc URL

URL at the lbl.gov domain has message saying:
"This website is going away soon! Update your bookmarks!"

* add note about build log file for post-install step

* provide links to both 2.x and 3.x security docs

* remove whitespace.  Passing flake8 confirmed locally this time :)

* add TODO comment for fakeroot support
2019-08-12 15:38:15 -05:00
Jean-Paul Pelteret
2cc89fbf69 New package: TexStudio (#12301)
* Poppler library: Add new versions

* Poppler library: Allow building with QT4

* Poppler library: Install header files

* Add patch to Poppler package

* Add new package: TexStudio
2019-08-12 14:48:28 -05:00
Russell J. Hewett
31f9135cbc blaze: converted to CMakePackage (#12357)
The previous version does not properly install the required cmake
configuration files for blaze-lib, so find_package does not work
correctly.

This patch converts the blaze-lib package to use CMakePackage,
adds the required cmake dependency, and removes the install()
member function, which is not working correctly and is no longer
needed.
2019-08-12 14:47:54 -05:00
Geoffrey Oxberry
6de750d860 gtksourceview: new package (#12387) 2019-08-12 14:44:54 -05:00
Janne Blomqvist
490168be4d openblas: fix target detection for cross-compiling (#12390)
In a review of a previous pull request (
https://github.com/spack/spack/pull/10713 ) it was mentioned that the
proper way to figure out the target architecture is via
spec.architecture.target.  This patch fixes this for the openblas
package.

Signed-off-by: Janne Blomqvist <janne.blomqvist@aalto.fi>
2019-08-12 14:43:04 -05:00
Janne Blomqvist
820b220b22 openblas@0.3.7: New version (#12391)
This adds OpenBLAS 0.3.7 (released 2019-08-11).
2019-08-12 14:41:26 -05:00
Kelly (KT) Thompson
5b84d6dff1 Apply xl patch for cce@9: to fix cmake. (#12392) 2019-08-12 14:41:00 -05:00
Daryl W. Grunau
9538889f1c packages/skopeo (#12348)
* bump eospac version

* Revert "bump eospac version"

This reverts commit 835b1f822d8c083f6ab9eb17222c00409e8eb3da.

* new package: skopeo

* address flake8 issues

* address adamjstewart's comments

* use the Executable class and undocumented 'str' feature for output

* Package -> MakefilePackage

* add missing build phase

* patch -> edit phase
2019-08-12 11:28:05 -05:00
Massimiliano Culpo
ab4b5deb97 bugfix: Python 2.6 parsing error (#11867)
Apparently shlex.split can't deal with unicode encoded characters in
Python2.6. The solution is to convert to str before calling the
function.
2019-08-11 13:00:36 -07:00
Seth R. Johnson
172fcb0225 Update SWIG versions and add Fortran fork (#12185)
* Add git repositories for SWIG and SWIG-Fortran

* Fix typo in documentation

* Move 'master' to top of SWIG version list
2019-08-11 12:58:12 -05:00
Glenn Johnson
30cf665d16 Fix py-matplotlib build with Intel compiler (#12144)
Not sure what happened between #5321 and now but the CC=CXX fix now
prevents py-matplotlib from building with the Intel compiler. I verified
with versions of py-matplotlib from 2.0.2 to 3.0.2 and intel-17.0.4 and
19.0.4 that py-matplotlib successfully builds with the Intel compiler
without that code.
2019-08-11 12:57:31 -05:00
Seth R. Johnson
52a737affe Use correct GCC installation when installing clang with GCC (#12381) 2019-08-11 12:40:12 -05:00
Sinan
5532b8e617 new package: qwtpolar (#12382)
* create qwtpolar package

* patch config files so that qwtpolar successfully builds

* make flake8 happy
2019-08-11 12:39:58 -05:00
Frédéric Simonis
33bec18cc2 Add preCICE xSDK support (#12356)
* Add preCICE xSDK support

* Cleanup generation of cmake arguments

* Generalize numpy include

* Fix python spec

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Fix numpy spec

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-08-11 12:19:44 -05:00
Adam J. Stewart
0d4114b095
Add NCCL 2.4.8-1 (#12362) 2019-08-10 11:53:29 -05:00
Adam J. Stewart
c5c1d1db43
Port py-poster to Python 3 (#12363)
* Port py-poster to Python 3

* Forgot the patch
2019-08-10 11:53:15 -05:00
Adam J. Stewart
e69456bde2
Add py-clipboard package (#12364) 2019-08-10 11:52:52 -05:00
Adam J. Stewart
6e14e74014
Add py-gee-asset-manager package (#12365) 2019-08-10 11:52:38 -05:00
Adam J. Stewart
889b625452
Add py-geeadd package (#12366) 2019-08-10 11:52:24 -05:00
Adam J. Stewart
8e4d60645f
Add py-geeup package (#12367) 2019-08-10 11:52:10 -05:00