Commit graph

5316 commits

Author SHA1 Message Date
becker33
3686c250ed Fix type issues with setting flag handlers (#6960)
The flag_handlers method was being set as a bound method, but when
reset in the package.py file it was being set as an unbound method
(all python2 issues). This gets the underlying function information,
which is the same in either case.

The bug was uncovered for parmetis in #6858. This is a partial fix.
Included are changes to the parmetis package.py file to make use of
flag_handlers.
2018-01-18 17:55:44 -08:00
Howard Pritchard
568db965cf ucx: update for release 1.2.2 (#6990)
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2018-01-18 13:41:16 -07:00
junkudo
9704369f17 ipopt package: set compiler flags in configure (#6714)
This makes use of the new flag_handler logic from 28d8784a to set
compiler flags for ipopt by passing them as arguments to the build
system rather than injecting them into the compiler wrappers. This
avoids conflicts between flags that are chosen by the build system
and flags that are set by the user.
2018-01-18 10:39:08 -08:00
Adam J. Stewart
498c522a31
Add url_for_version to pango package (#6939) 2018-01-15 14:05:27 -06:00
Geoffrey Oxberry
48b127a225 ipopt: add version 3.12.8, relax metis version requirements (#6936)
* ipopt: add version 3.12.8

* ipopt: allow linking with metis 5
2018-01-15 09:31:50 -06:00
Geoffrey Oxberry
67219a1340 ruby: fix +openssl & +readline variants (#6935)
* ruby: fix +openssl & +readline variants

Fix "unqualified variable spec['openssl']" error in the ruby package
that arises when trying to install the `+openssl` variant by
referencing the `spec` field in the `Ruby` class. A similar error
arises when trying to install the `+readline` variant; this error is
also fixed by this patch.

* ruby: make +openssl variant default to on

Ruby's gem command will fetch gems from HTTPS resources by default
(e.g., gem install bundler). Without openssl, request to fetch gems
bounce back with the error

```
ERROR:  While executing gem ... (Gem::Exception)
    Unable to require openssl, install OpenSSL and rebuild ruby (preferred) or use non-HTTPS sources
```

Without the ability to install gems -- required for some spack
packages -- the ruby installation has limited utility for many users.

* ruby: update rubygems ssl cert to fix ssl errors

The SSL certificate bundled with Ruby 2.2.0 is outdated, so e.g., `gem
install erubis` will fail with an SSL certificate error. This commit
installs the updated SSL certificate to the proper directory so that
gems can be downloaded and installed from RubyGems.
2018-01-15 09:00:07 -06:00
Federico Ficarelli
6093d6df7d Reworked the graphviz package (#6865)
The url in graphviz has been fixed and its version has been 
updated to the latest available (2.40.1). Added variants for 
expat, qt, gtk+ and ghostscript.
2018-01-15 15:26:14 +01:00
Milton Woods
43190a6bf6 Py-fparser: python parser for Fortran code (#6794)
* py-fparser: parser for Fortran 77..2003 code

* py-fparser: guard against external pytest.ini

* py-fparser: define 'develop' version as latest master branch

* py-fparser: fetch tagged versions from git repo

* py-fparser: add latest release 0.0.6

* py-fparser: whitespace adjustments for flake8

* py-fparser: inherit python dependency from PythonPackage

* py-fparser: rely on spack to resolve sub-dependencies

* py-fparser: try type='test' for py-pytest

* py-fparser: fetch release tarballs instead of git commits

* py-fparser: test deptype is available, remove comment

* py-fparser: limit versions that use py-six

* py-fparser: version ranges do not need a lower bound
2018-01-14 15:42:17 -06:00
lingnanyuan
f7db5d9cac r-rappdirs: Create new package. (#6891)
* r-rappdirs: Create new package.

* r-rappdirs: Add version constraints.
2018-01-14 15:41:32 -06:00
Milton Woods
a11765dbdf Qt fixes for RHEL6/7 (#6895)
* qt: move licence acceptance from qt3krell.patch to qt3accept.patch

* qt: ensure that ptrdiff_t is defined for qt@3.3.8b

* qt: disable webglplugin for qt@5.10~opengl

* qt: depend on libxext (for qt@3 and @4)

* qt: avoid X dependencies on darwin platforms

* Revert "qt: avoid X dependencies on darwin platforms"

This reverts commit 05ce08de94be1e02d7e2f2dae0c1ae59baa3f65a.

* qt: limit range of versions depending on libxext
2018-01-14 15:41:17 -06:00
healther
8f6fe9e030 Fix installation of bash-completion (#6911)
* Fix installation of bash-completion

* use run_before decorator instead of overriding install method
2018-01-14 15:40:22 -06:00
healther
e583d789d6 Update py-backports-functools-lru-cache to 1.4 (#6915)
* Update py-backports-functools-lru-cache to 1.4

* fix old url
2018-01-14 15:39:53 -06:00
healther
a03674ebbd make vim python3 compatible (#6925) 2018-01-14 15:39:33 -06:00
David Pérez-Suárez
0adcb610fe Updated catch to newer version (up to 2.1.0) (#6933)
Also updated all the sums from previous versions
2018-01-14 15:39:10 -06:00
healther
d30dc2bf15 Add version 1.81 of cppcheck (#6912) 2018-01-14 08:14:55 -06:00
Simone Bnà
e2908af9b4 Catalyst package (#6834)
* catalyst: added catalyst package

* catalyst: missing libx11 and libxt dependencies

* catalyst: added std cmake args

* catalyst: override paraview git describe cmake variable

* catalyst: fixed flake8 errors
2018-01-13 22:20:39 -06:00
Michael Kuhn
df7876ab54 Do not construct path to perl command manually (#6927)
Instead, use spec['perl'].command.path.
2018-01-13 22:10:42 -06:00
healther
589ea856a5 Add PyNN 0.9.1 (#6926) 2018-01-13 22:10:10 -06:00
healther
b3c96e2e40 Update checksum for version 0.5.3 of yaml-cpp (#6924) 2018-01-13 22:09:36 -06:00
healther
47b554a959 Add py-pyflakes versions up to 1.6.0 (#6923) 2018-01-13 22:09:17 -06:00
healther
b87f9ae5d4 Add py-pycodestyle versions up to 2.3.1 (#6922) 2018-01-13 22:08:51 -06:00
healther
7c4a193b3f Update py-neo to 0.5.2 (#6921) 2018-01-13 22:08:38 -06:00
healther
a2d7939e27 Add py-mccabe versions up to 0.6.1 (#6920) 2018-01-13 22:08:18 -06:00
healther
176814373c add version 1.26 to py-git-review and fix run_env (#6919)
* Update py-git-review to version 1.26.0

* Fix py-git-review package

TypeError: object of type 'Version' has no len()
2018-01-13 22:08:05 -06:00
healther
c6a7979cfd Update py-flake8 to 3.5.0 (#6918) 2018-01-13 22:07:46 -06:00
healther
8c648a73bc py-doxypy conflicts python3 (#6916)
* py-doxypy conflicts python3

* change conflicts to depends_on
2018-01-13 22:07:14 -06:00
healther
25bcabec98 Update py-autopep8 to 1.3.3 (#6914)
* Update py-autopep8 to 1.3.3

* Update package.py
2018-01-13 22:05:44 -06:00
Michael Kuhn
d8b03d1e37 glib: Fix python handling (#6910)
Newer versions of glib require python. Fix up the python sbangs the same
way we already fix up the perl ones.

Fixes #6899
2018-01-13 08:50:06 -06:00
healther
e8df0ddce4 add patch for gccxml with gcc@5: (#6913) 2018-01-13 08:46:00 -06:00
healther
715a173688 Update py-elephant to 0.4.1 (#6917) 2018-01-13 08:44:43 -06:00
scheibelp
278901c02c
Handle test dependencies that are python extensions (#6904)
See #6794

This fixes cases where test-only dependencies were omitted from
consideration when modifying the environment at build time. This
includes an update to the python package definition to add
testing-related python extensions to its specialized environment
setup.
2018-01-12 19:02:54 -08:00
Geoffrey Oxberry
761b8f76d2 coinhsl: add version 2014.01.10 (#6909)
* coinhsl: add version 2014.01.10 (stable)

* coinhsl: make 2014.01.10 preferred version

Make Harwell Subroutines Library for IPOPT version 2014.01.10 the
preferred version because it is the latest stable version released.

* coinhsl: add option to link w/ BLAS libraries
2018-01-12 17:27:52 -06:00
健美猫
9e3f8c0d79 A new package: ethminer. (#6908) 2018-01-12 07:50:07 -06:00
Michael Kuhn
070bcab7f2 libbson, libmongoc: Update to 1.9.1 (#6900) 2018-01-11 10:19:44 -06:00
stefanosoffia
5dd7baa61d Updated misc devel tools. (#6897) 2018-01-11 10:06:53 -06:00
Gregory Lee
5d49fe4b4c fix ips 2018 vtune directory name (#6893) 2018-01-11 09:51:14 -06:00
lingnanyuan
637165eef8 r-biocstyle: Create new package. (#6503)
* r-biocstyle: Create new package.

* r-biocstyle: add version constraints.
2018-01-10 23:13:31 -06:00
lingnanyuan
88d9e6bd21 r-bookdown: Create new package. (#6504)
* r-bookdown: Create new package.

* r-bookdown: add version constraints.
2018-01-10 23:13:12 -06:00
lingnanyuan
d2eecf5774 r-rprojroot: Create new package. (#6505)
* r-rprojroot: Create new package.

* r-rprojroot: add version constraints.

* r-rprojroot: Add list_url.
2018-01-10 23:12:54 -06:00
lingnanyuan
384b8f43a2 r-rmarkdown: Update version to 1.7 (#6506)
* r-rmarkdown: Update version to 1.7

* r-rmarkdown: add version constraints.
2018-01-10 23:12:35 -06:00
snehring
d07b83237d discovardenovo: adding new package (#6888) 2018-01-10 20:40:41 -06:00
jkelling
da01c8a541 package libharu: Add build deps (#6883)
... libtool,autoconf,automake
2018-01-10 12:28:32 -06:00
stefanosoffia
8a7525064d Updated i3 dependencies. (#6885) 2018-01-10 11:02:07 -06:00
Adam J. Stewart
db42d080f7
Geant4: fix qt dependency (#6828) 2018-01-10 09:48:15 -06:00
Adam J. Stewart
ab4e20a49c
Older versions of libiconv don't work with newer versions of GCC (#6829) 2018-01-10 09:47:33 -06:00
Levi Baber
c1117f0593 opa-psm2: new package (#6874)
* opa-psm2: new package

* opa-psm2: installs now. think the module file needs work

* opa-psm2: module file seems good now

* opa-psm2: remove fixme

* opa-psm2: flake8 fixes

* opa-psm2: removing unnecessary make in install phase
2018-01-10 09:45:34 -06:00
健美猫
b733ce1e5f bcftools is a AutotoolsPackage. (#6881) 2018-01-10 09:45:05 -06:00
Geoffrey Oxberry
77a29f09f9 emacs: on darwin, do not build Cocoa app (#6882)
Building emacs on darwin throws an error when trying to build an Emacs
app in the nextstep/Emacs.app path of the build tree. For now, disable
building this app.

It's possible to enable building the app also; Homebrew offers options
to this effect, and also adds Mac-specific options for starting the
emacs daemon. However, for the sake of simplicity and getting a
workable up-to-date emacs installation on my machine as quickly as
possible, this commit focuses on a minimal viable modification.
2018-01-10 09:44:35 -06:00
健美猫
ac5b5724c6 Add a new package: unblur. (#6867)
* Add a new package: unblur.

* Add a new package: unblur.

* Add a new package: unblur.

* Add a new package: unblur.

Conflicts:
	var/spack/repos/builtin/packages/unblur/package.py

* Add a new package: unblur.
2018-01-10 09:35:00 -06:00
Adam J. Stewart
8555947e05 Explicitly cast Version to str in openfoam-org (#6880) 2018-01-10 13:48:22 +01:00