Commit graph

9847 commits

Author SHA1 Message Date
Gregory Lee
35a696a965 added intel parallel 2020.0 and components (#14451) 2020-01-13 20:51:22 -06:00
Rob Latham
a76ef717bd Support for more libfabric providers (#14453)
Add support for (just about) every provider libfabric knows about
2020-01-13 20:47:48 -06:00
MIchele Martone
fa2e094c81 new package: librsb (#14455)
* new package: librsb

* flake8, be good

* no hardocded FC=gfortran
2020-01-13 20:46:20 -06:00
darmac
6c4c26f538 add new package : keepalived (#14463) 2020-01-13 20:36:16 -06:00
Glenn Johnson
0a666af326 Remove overlapping depends_on statement for py-basemap (#14475)
This PR resolves an overlapping dependency specification for py-basemap.
2020-01-13 20:34:13 -06:00
Rao Garimella
487731e207 Add version 3.3.0 to MSTK spackage (#14476) 2020-01-13 20:33:47 -06:00
Michael Kuhn
8660b0b5b8 python: Fix post-install script without C++ compiler (#14481) 2020-01-13 20:29:02 -06:00
Adam J. Stewart
5b1297378c
Add Python 3.8.1 (#14484) 2020-01-13 20:27:57 -06:00
Adam J. Stewart
d78c52c291
Add GDAL 3.0.3 and 2.4.4 (#14485) 2020-01-13 20:27:41 -06:00
Axel Huebl
0d435630db openPMD-api: Depends on ADIOS 2.5.0 (#14489)
Only ADIOS2 versions we support.
2020-01-13 20:24:00 -06:00
Jonathon Anderson
673a725576 New package: qemu (#14184) 2020-01-13 15:52:18 -06:00
Paul
5afc407faa Add Go version 1.13.6 and 1.12.15 (#14482) 2020-01-13 16:48:27 +01:00
Simon Pintarelli
465577847d SIRIUS, SpFFT: updated package recipes and versions (#14469) 2020-01-13 14:45:36 +01:00
darmac
6edc7a2558 racon: added v1.4.3, v1.4.2, v1.4.0 and v1.3.3 (#14478) 2020-01-13 14:23:33 +01:00
Sajid Ali
8917d58e7a syned: new package at develop (#14468) 2020-01-13 13:45:47 +01:00
Christoph Junghans
9c4479624c gromacs: add v2020 (#14477) 2020-01-13 09:45:20 +01:00
Nichols A. Romero
d1c708bdf3 LLVM-Flang package (#14389)
* Add 20181226 release of pgmath

* 20190329 release of pgmath requires match for CMPLX macro.

* Add llvm-flang package for Flang fork of LLVM

* Add new and old flang releases.

* Add cmake and python dependencies.

* Update dependencies on llvm-flang and pgmath.

* Fix cmake args and change spec to reflect llvm-flang package.

* change copyright date through 2020.

* Reference Flang package more explicitly.

* More robust support for python executable.

* import os no longer needed, picked up by flake8.

* Use built-in target spec. Variant and targets follow style in main LLVM package.

* Get rid of targets list and only support one target for now.

* Sparc does not appear to be supported in Flang.

* Raise InstallError if architecture not supported.
2020-01-11 16:13:03 -06:00
Adam J. Stewart
52df2309cb
Add TensorFlow 2.1.0 (#14429)
* Add TensorFlow 2.1.0

* kafka and ignite are no longer supported
2020-01-09 11:01:51 -06:00
Hadrien G
b982015930 root: Configure ROOT correctly for python3 (#14225)
* Configure ROOT correctly for python3

* Record Python version conflict

* Code editing on a phone sucks
2020-01-09 09:33:10 -06:00
thelfer
ff23672591 new versions of TFEL and MGIS (#14249)
* fixes #967

* Version bump to 0.9.1

- Bugfixes for spack find
- 0.9.1 can read specs from current develop.

* Don't assume spack is in the path when building docs.

* Quick fix for relocation issues.

* elf relocation fix: cherry-picked from develop branch (#6889)

* Revert "Quick fix for relocation issues."

This reverts commit 57608a6dc4.

* Buildcache: relocate fixes (#6512)

* Updated function which checks if a binary file needs relocation.
  Previously this was incorrectly identifying ELF binaries as symbolic
  links (so they were being excluded from relocation). Added test to
  check that ELF binaries are not considered symlinks.

* relocate_text was not replacing paths in text files. Added test to
  check that text files are relocated properly (i.e. paths in the file
  are converted to the new prefix).

* Exclude backup files created by filter_file when installing from
  binary cache.

* Update write_buildinfo_file method signature to distinguish between
  the spec prefix and the working directory for the binary cache
  package.

* Final changes for v0.11.0 (#6318)

* Fix logo link in README.md to point to the develop branch. (#6969)

* Compiler flag handlers (#6415)

This adds the ability for packages to apply compiler flags in one of
three ways: by injecting them into the compiler wrapper calls (the
default in this PR and previously the only automated choice);
exporting environment variable definitions for variables with
corresponding names (e.g. CPPFLAGS=...); providing them as arguments
to the build system (e.g. configure).

When applying compiler flags using build system arguments, a package
must implement the 'flags_to_build_system_args" function. This is
provided for CMake and autotools packages, so for packages which
subclass those build systems, they need only update their flag
handler method specify which compiler flags should be specified as
arguments to the build system.

Convenience methods are provided to specify that all flags be applied
in one of the 3 available ways, so a custom implementation is only
required if more than one method of applying compiler flags is
needed.

This also removes redundant build system definitions from tutorial
examples

* Fix type issues with setting flag handlers (#6960)

The flag_handlers method was being set as a bound method, but when
reset in the package.py file it was being set as an unbound method
(all python2 issues). This gets the underlying function information,
which is the same in either case.

The bug was uncovered for parmetis in #6858. This is a partial fix.
Included are changes to the parmetis package.py file to make use of
flag_handlers.

* Bump version to 0.11.1

* Added flags to unit tests + OSX build done once per day (#6988)

* Adding flags to codecov reports

* OSX builds are triggered once a day

* Pull R list_urls from upstream.

* travis: removed /usr/local/include/c++ before installing gcc on OSX (#6515) (#7027)

"brew install gcc" fails for travis build because of an existing
/usr/local/include/c++. This commit removes the offending file
as suggested by brew.

* Fix gfortran 7 detection (#7017)

* Add NameError to exceptions caught from configure_args in module generation (#7173)

* Revert "Binary caching: remove symlinks, copy files instead (#9747)"

This reverts commit 058cf81312.

* Make Spack relocate text files in build caches with relative binaries

* add the tfel package

* fix the tfel package

* fix the tfel package

* fix the tfel package

* Taking Adam J. Steward' remarks into account

* fixes trailing white spaces

* Update description

* Update dependencies following @adamjstewart adices

* Style fixes

* Style fixes

* Add java optional support

* add the maintainers attribute (following @alalazo advice), disable interface not selected (following @adamjstewart advice)

* flake8 fixes

* Fix Cast3M and python-bindings support. Python detection is made compatible with cmake'FindPythonLibs module (at least how it is used in TFEL)

* Style fixes

* Style fixes

* Fix test on python version

* Follow @adamjstewart advices: code is much cleaner and readable

* Small fix

* Small fix

* Add comment

* Small fix in cmake option

* try again (trying to overcome Travis CI unstable build process)

* Add support for the MFrontGenericInterfaceSupport project (MGIS)

* Style fixes

* Package documentation update

* Package documentation update

* Fix a typo thanks to Andreas Baumbach review

* Follow Adam J. Stewart advices

* Fix type

* bugfix: add back r's for invalid regexes

* tutorial basics section: fix gcc install version

* version bump: v0.12.1

* bugfix: bring in .travis.yml from develop

* Add new TFEL' versions (3.0.4, 3.1.4 and 3.2.1). Add new MGIS version (1.0.1). Fix MGIS dependency

* merge with spack:develop

* add missing dependency

* new versions of  and

* Fix MGIS url. Fix duplicate variant in TFEL

* Fix tfel packaging according to Adam J. Stewart' advices

* Fix flake8 warning

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
Co-authored-by: Peter Scheibel <scheibel1@llnl.gov>
Co-authored-by: Greg Becker <becker33@llnl.gov>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-01-09 09:32:17 -06:00
Dr. Christian Tacke
4bd4ed0f84 FairLogger: new package (#14427) (#14427)
* Fixed date on first copyright header.
* Rename dev version to develop
* Improve filter_file calling
* Be explicit for +pretty / ~pretty
2020-01-09 09:29:38 -06:00
asmaahassan90
75760e44f3 Add ADF (#14423)
* Add ADF

* Fix typo and lint

* fix lint again

* one more lint fix

* fix identation

* still stying to fix identation

* one final fix

* import needed libraries

* changes as per reviewer's request

fix setup environment function, enhance recipe

* add import os once again

* chnages as per reviewer's request
2020-01-09 09:28:20 -06:00
darmac
ffb6102a42 tomcat: new package (#14441) 2020-01-09 13:08:59 +01:00
darmac
9ae80a56a3 storm: new package (#14437) 2020-01-09 13:06:48 +01:00
t-karatsu
592a144feb rapidjson: delete '-march' flags when using Fujitsu compiler. (#14435) 2020-01-09 07:04:27 +01:00
Glenn Johnson
4a84155caa fix build for qt5 and the Intel compiler (#14387)
* Set conflicts for qt5 and the Intel compiler

This PR sets a `conflicts` statement for QT5 and the Intel compiler.

* New patches for intel compiles

This commit adds two patches to get QT5 to compile with the intel
compilers. The two patches are very similar but the file being patched
was changed substantially between qt-5.11 and qt-5.12. The patch checks
versions of both GCC and Intel compilers to know when to use overflow
builtis. Essentially, GCC must be >= 5 and Intel must be >= 18.

The sqlite dependency needs the `+column_metadata` variant when the
Intel compiler is used. That is made conditional on the compiler but it
might make sense to make that the default for the sqlite dependency.

Some other changes were made based on testing builds of various QT5
versions with several Intel compilers.

- The libxext dependency is still needed for QT5
- A dependency on libxrender is needed
- The gtk option format needs to be constrained at the qt@5.7 level, not
  qt@5.8.
- An extra configure option is needed for the sql plugins RPATH
2020-01-08 13:02:37 -06:00
noguchi-k
f79649d2e3 lrslib: fix return value (#14422) 2020-01-08 12:41:39 -06:00
Chuck Atkins
26ffbe3d21
cmake: Create an optimized release build (#14414) 2020-01-08 13:17:53 -05:00
Corey adams
de93830b9a Adding a new package, scikit-build, which is useful for building Python Extensions (#14417)
* Adding a new package, scikit-build, which is very useful for building python extensions

* Update package.py

* Update package.py

Trying to address flake8 corrections

* Update var/spack/repos/builtin/packages/py-scikit-build/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-scikit-build/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-01-08 10:06:47 -06:00
Mark W. Krentel
8a82c930bb hpcviewer: add version 2019.12 (#14419)
Add conflicts for aarch64 and darwin.
2020-01-07 21:51:18 -06:00
Hadrien G
11501532d3 Record a new ROOT/GCC incompatibility (#14371) 2020-01-07 21:35:47 -06:00
Justin S
3e8b4a9b24 py-rapidjson: new package at 0.9.1 (#14280)
* py-rapidjson: new package at 0.9.1

* py-rapidjson: rename to py-python-rapidjson, use PyPI mirror

* py-python-rapidjson: add missing deps

* python-rapidjson: use short PyPI url

* py-python-rapidjson: remove extra dependencies
2020-01-07 16:40:22 -06:00
Justin S
a24498f7ba r-ldheatmap: new package at 0.99-7 (#14405) 2020-01-07 15:33:41 -06:00
Adam J. Stewart
c40ee08c8d
NumPy 1.18.1 requires Cython 0.29.14 (#14418) 2020-01-07 15:22:27 -06:00
Sinan
e4f56378b1 Package/opencv: cudacodec fix (#14409)
* create new variant, fix build error

* flake8

* add conflict, re-arrange config arg for cudacodec
2020-01-07 13:19:18 -06:00
Matthias Diener
777812df4e gdb: add version 8.3.1 (#14413) 2020-01-07 12:38:05 -06:00
Michael Kuhn
be3482de09 ncl: Add missing fontconfig dependency (#14411)
Moreover, cairo needs to have its freetype variant enabled.
2020-01-07 10:55:34 -06:00
Michael Kuhn
a5ae5aca36 gdal: Fix libgeotiff dependency (#14410)
gdal@2.4.3 is missing the libgeotiff dependency.
2020-01-07 10:55:01 -06:00
Adam J. Stewart
d2ed01a12c
Add py-numpy 1.18.1 (#14406) 2020-01-06 17:48:27 -06:00
Justin S
e49a5adf04 r-snpstats: new package at 1.34.0 (#14404) 2020-01-06 16:21:38 -06:00
Justin S
e04a9031b0 r-genetics: new package at 1.3.8.1.2 (#14403) 2020-01-06 16:20:34 -06:00
Thom Troy
0950f5ffa3 Add updated kaldi and openfst (#14398)
* add openfst v1.6.7 and kaldi from 2019-09-29

* revert openfst package version in url
2020-01-06 16:19:42 -06:00
George Hartzell
37b11d0468 Add singularity@3.5.2 (#14401) 2020-01-06 16:12:50 -06:00
darmac
f3c0d23a3c Fastdfs (#14378)
* add new package : fastdfs

* refine install()

* remove redundant fastdfs/fastdfs/package.py

* fix install() error
2020-01-06 16:12:08 -06:00
Justin S
627fd1949d py-ujson: new package at 1.35 (#14279)
* py-ujson: new package at 1.35

* py-ujson: use PyPI mirror, add missing deps

* py-ujson: use short PyPI url
2020-01-06 15:53:26 -06:00
Seth R. Johnson
47750c8800 Fix QT on Linux+clang (#13684)
* Add platform flag to QT for linux+clang

* Extend QT platform support to more compilers and systems

* Unify QT5 configure options

* fixup! Unify QT5 configure options

* fixup! Unify QT5 configure options

* fixup! Unify QT5 configure options

* Fix newer flake8 and mac qt5 configure
2020-01-06 15:47:16 -06:00
Erik Schnetter
7cde359eb8 Nsimd: New package (#14226)
* Nsimd: New package

* Various cleanups as suggested during review
2020-01-06 15:40:58 -06:00
asmaahassan90
c0672eb641 Add py-thirdorder recipe (#12791)
* Add Thirdorder recipe

* Remove white spaces

* Converting recipe to a PythonPackage base class

* remove trailing spaces

* remove line at end of file

* enhance recipe as per reviewer

* fix post_install as requested by reviewer

* rename dir to py-thirderorder

* change checksum to sha256
2020-01-05 12:28:10 -06:00
Adam J. Stewart
f7f4d1a02e
Overhaul py-pillow package (#14385)
* Overhaul py-pillow package

* Fix bug where zlib and jpeg were always disabled
2020-01-04 22:49:39 -06:00
Adam J. Stewart
f0532e27da
libwebp: CMakePackage -> AutotoolsPackage (#14384) 2020-01-04 22:48:45 -06:00