Commit graph

2554 commits

Author SHA1 Message Date
Kelly (KT) Thompson
3553c8b9e9 On Cray machines, use the Cray compile wrappers instead of MPI wrappers.
+ Cray compile wrappers are MPI wrappers.
+ Packages that need to be compiled with MPI compile wrappers normally use
  'mpicc', 'mpic++' and 'mpif90' provided by the MPI vendor. However, when using
  cray-mpich as the MPI vendor, the compile wrappers 'CC', 'cc' and 'ftn' must
  be used.
+ In this scenario, the mpich package is hijacked by specifying cray-mpich as an
  external package under the 'mpich:' section of packages.yaml. For example:

  packages:
    mpich:
      modules:
        mpich@7.4.2%intel@16.0.3 arch=cray-CNL-haswell: cray-mpich/7.4.2
      buildable: False
    all:
      providers:
        mpi: [mpich]

+ This change allows packages like parmetis to be built using the Cray compile
  wrappers. For example: 'spack install parmetis%intel@16.0.3 ^mpich@7.4.2 os=CNL'
+ This commit relies on the existence of the environment variable CRAYPE_VERSION
  to determine if the current machine is running a Cray environment. This check is
  insufficient, but I'm not sure how to improve this logic.
+ Fixes #1827
2016-10-10 19:10:26 -06:00
Kelly Thompson
29fc9cd22c Update package to use MPI compile wrappers as specified in MPI package. (#1985)
+ Previouly, these strings were hard coded to 'mpicc', 'mpic++', and 'mpifort'.
2016-10-10 15:33:00 -07:00
Denis Davydov
c2ca8693e9 fix blas-lapack in scipy and numpy (#1949)
* fix blas-lapack in scipy and numpy

* py-numpy: do not set rpath on macOS

* py-scipy: do not set Blas/Lapack. This appears to be picked up from py-numpy

* py-numpy: don't write rpath= in Sierra only

* py-numpy: add a link to build notes
2016-10-10 12:38:44 -07:00
Erik Schnetter
377ac68690 Correct Charm++ install procedure (#1957)
Charm++ only creates symbolic links instead of copying files. Correct this.
2016-10-10 09:13:20 -07:00
Jean-Paul Pelteret
d3daa829f0 Added symengine and associated packages (#1885)
Symengine and associated packages
2016-10-07 22:45:24 -07:00
Todd Gamblin
dbc864c9db Restore default RPATH settings but allow packages to limit to immediate deps. (#1954)
- Some packages (netcdf) NEED RPATHs for transitive deps.
- Others (dealii) will exceed OS limits when the DAG is too large.
2016-10-06 15:57:23 -07:00
Denis Davydov
9683e0df07 atlas: add 3.10.3 (#1952) 2016-10-06 15:23:18 -07:00
Joseph Ciurej
82fcc5e1de Feature Proposal : Make All Python Extensions User Configuration Independent (#1435)
* Updated all Python extension packages to use 'setup_py' on install.

* Fixed a few minor style issues with the updated Python packages.
2016-10-06 14:43:49 -07:00
Sergey Kosukhin
ebef9628a3 Update gmp: fixed an issue with intel compiler. (#1898) 2016-10-06 12:49:03 -07:00
Jay
6e9353f1a8 Updated nettle to have m4 as an immediate dependency (#1946)
* Updated nettle to have m4 as an immediate dependency to match new PATH
construction logic which only includes immediate dependencies.

* Update package.py
2016-10-06 11:50:50 -07:00
James Wynne III
7dc11472bf Sqlite ppc64le configure build guess fix (#1684)
* Added check for ppc64le because configure cant guess the build type for rhel on ppc64le

Expand/clarify description of dependency types

Refactored getting the arch so that its less verbose

* Fixed flake8 issues
2016-10-06 02:48:05 -07:00
Sergey Kosukhin
92ca6d6423 Update pixman: mmx is disabled only for MacOS. (#1896) 2016-10-06 02:43:34 -07:00
Sergey Kosukhin
4cce23ea89 Update libtiff: updated homepage and fetch urls. (#1895)
* Update libtiff: updated homepage and fetch urls.

* Update libtiff: new version 4.0.6.
2016-10-06 02:43:23 -07:00
Elizabeth Fischer
264604df3e cgal: build out of source. (#1918)
* cgal: build out of source.

* Simplify cmake out-of-source.
2016-10-06 02:36:27 -07:00
Jeffrey Salmond
a648dc6b33 add python options to vtk package (#1931) 2016-10-06 02:29:25 -07:00
Elizabeth Fischer
2966f174ae mumps: Add alternate download location (in comments) (#1919) 2016-10-05 23:15:38 -07:00
Adam J. Stewart
6ee020cea4 Add package for CONVERGE CFD (#1905) 2016-10-05 10:37:50 -07:00
Adam J. Stewart
95b07c365c Add latest versions, resolve variant resolution bug (#1909) 2016-10-05 10:37:35 -07:00
Elizabeth Fischer
42c69b3809 everytrace: New package (#1543)
* everytrace: New package

Everytrace ensures that stack trace is obtained every time a program exits, for whatever reason.

* everytrace: Change CMake to build dependency

* Renamed to everytrace-example, flake8 and copyright issues.

* flake8

* Missing type=build
2016-10-05 10:03:05 -07:00
Adam J. Stewart
d5e5e4ed1a Add missing dependencies for Flake8 (#1883)
* Warn user if flake8 can't find setuptools

* Add missing dependencies of flake8

* Updates to py-autopep8, make packages activateable

* Check for presence of setuptools for Sphinx too

* Fix bug in order of commands
2016-10-05 10:00:31 -07:00
Axel Huebl
ac3e21f8d4 PNGwriter, libSplash: Add master version (#1744)
* PNGwriter, libSplash: Add `master` version

* PNGwriter, libSplash: Add `dev` versions

Can be used for now, `develop` is currently discouraged.
2016-10-05 06:46:20 -07:00
Denis Davydov
4e5d340665 boost: set 1.61 as preffered until 1.62 is fixed (#1908) 2016-10-05 05:16:06 -07:00
Pramod Kumbhar
9daafc32f1 Packages for Darshan I/O performance characterization tool from ANL (#1900) 2016-10-04 14:40:35 -07:00
Adam J. Stewart
7806fded3e Update documentation URL after switch to readthedocs (#1901) 2016-10-04 11:47:25 -07:00
Sergey Kosukhin
1d981ebd50 A set of tools used in climate modeling and numerical weather prediction. (#1317)
* Update grib-api: switched to cmake building system.

* Update harfbuzz: added pkg-config dependency.

* Update pango: added pkg-config dependency.

* Add libemos package.

* Add Magics (from ECMWF) package.

* Revert "Variant for building cdo without mpi (#1638)":
CDO does not use MPI.

This reverts commit 079d063c6d.

* Update CDO package: full featured implementation.

* Update magics: added python as build dependency.

* Update cdo: added disabling configuration options.
2016-10-04 09:29:22 -07:00
Ivo Jimenez
d36028cff4 Adds mpip package (#1886) 2016-10-04 01:30:52 -07:00
Ivo Jimenez
2c701d372e Adds lulesh package (#1887) 2016-10-04 01:28:23 -07:00
Pramod Kumbhar
e546d6246f Spack package for HPCToolkit (#1892)
* Spack package for HPCToolkit (performance analysis tool)

* Correction for PR comments, make flake8 happy

* update note / comments
2016-10-04 01:02:50 -07:00
Massimiliano Culpo
50fcade81b cp2k : added support for libint, fixed compilation issues on elpa (#1889) 2016-10-03 08:25:36 -07:00
Geoffrey Oxberry
df79ba0dcf gcc: fix darwin dispatch/object.h header issue (#1518)
Fixes #1203. Apple ships headers in Yosemite (and possibly earlier) that
are gcc-incompatible, but compile fine with clang. The fix is to copy
the offending system header from /usr/include/${REST_OF_HEADER_PATH} to
${GCC_PREFIX}/include/${REST_OF_HEADER_PATH} and replace the non-gcc-
compatible features with gcc-compatible equivalents.

See https://github.com/hashdist/hashstack/pull/771/files for
inspiration, and
http://hamelot.io/programming/osx-gcc-dispatch_block_t-has-not-been-declared-invalid-typedef/
for a description of the header issue.
2016-10-02 18:54:43 -07:00
Nicolas Richart
16f99bd0b2 Adding latest version of fenics (#1528)
* Adding last version of fenics and making trilinos not ambiguous on hdf5

* forcing fenics to ignore hdf5 cxx

* Adding deptypes and correcting the hdf5 patch

* flake8 corrections

* cleaning some useless code
2016-10-02 18:51:34 -07:00
Kelly Thompson
621a4d637d Provide newer versions of llvm (3.8.1, 3.9.0) (#1765)
* Provide new versions of llvm.

+ Provide file list and md5 hashes for 3.8.1 and 3.9.0.
+ Clean up indentation for the 'releases' data structure to improve
  consistency.

* Adding a block of code to the 'resources' structure for cfe.

* Merge cfe and clang resources into single entity.
2016-10-02 18:50:42 -07:00
Alfredo Adolfo Gimenez
1ea9582218 Added hadoop, spark, and variant spark+hadoop (#1833)
* Added hadoop, spark, and variant spark+hadoop

* Docstrings, dependency types, urls, copyright

* Flake8 fixes, link dependency for hadoop

* Build type for spark, env problem setting JAVA_HOME
2016-10-02 18:49:30 -07:00
Erik Schnetter
b22956bab2 git: Don't link against -lrt on Darwin (#1877)
There is no librt on Darwin, and it's not necessary either.
2016-10-02 18:37:45 -07:00
Erik Schnetter
28b48f3e1a Update PAPI to 5.5.0 (#1878) 2016-10-02 18:37:26 -07:00
Erik Schnetter
b2ff9dbcd4 Update tmux to 2.3.0 (#1879) 2016-10-02 18:37:17 -07:00
Kelly Thompson
051c5dbc27 New package: libquo (#1880)
* New package: libquo

libquo is a high-level, easy to use programming interface tailored specifically
for MPI/MPI+X codes that may benefit from evolving process binding policies
during their execution. QUO allows for arbitrary process binding policies to
be enacted and reverted during the execution of an MPI/MPI+X application as
different computational phases are entered and exited, respectively.

https://github.com/losalamos/libquo

* Remove use of 'which' and fix style non-conformance.
2016-10-02 18:36:48 -07:00
Bruno Turcksin
e854e053e4 Add boost 1.62.0 (#1882) 2016-10-02 18:36:31 -07:00
Jean-Paul Pelteret
c86d4c8920 Added bash-completion package (#951) 2016-10-02 17:50:39 -07:00
Pramod Kumbhar
4b34ba1035 pdt url change to download full installer tarball (#1881) 2016-09-30 14:31:28 -07:00
Pramod Kumbhar
6c627dbac9 Add cube variant for building GUI component with qt, parallel built supported (#1525) 2016-09-29 15:37:35 -04:00
Pramod Kumbhar
6ec46ca802 updated to latest available package and fixed installation issue (old packages are no longer available for download) (#1523) 2016-09-29 15:37:07 -04:00
Mitchell Devlin
86cad961e5 added libxstream (#1454) 2016-09-29 15:36:37 -04:00
Adam J. Stewart
deb1cb4805 Add libint package (#1264)
* Add libint package

* Add Intel optimization flags recommended by CP2K

* Add new version and Intel compiler optimization flags for libxc

* Add older version of libint

* Libint depends on GMP C++ library
2016-09-29 15:35:10 -04:00
Robert D. French
a77b48f491 Library for manipulating grib1 and grib2 files (#1736)
Pro tips from @adamjstewart:
* line too long in package description
* name it grib-api instead of grib_api
* depend on netcdf without reference to unnecessary constraints
2016-09-28 17:02:29 -04:00
Elizabeth Fischer
3352889d73 py-pil: Protect against building with Python3. (#1868)
* py-pil: Does not build with Python3.

* Set py-pillow to be the default pil provider

* Update package.py

* Change to comments requested by adamjstewart

* Remove version constraint from extends(), avoid a Spack bug.
2016-09-28 16:51:41 -04:00
Erik Schnetter
4040792501 Update Qthreads to 1.11 (#1863) 2016-09-28 15:22:02 -04:00
Todd Gamblin
295742e2b5 Fixes #1860. Subversion builds sequentially due to race. 2016-09-28 15:18:52 -04:00
Robert D. French
fea0a74bec vim8 is out! (#1753)
* depends on ncurses for 8.0 or higher
2016-09-28 15:17:15 -04:00
Adam J. Stewart
66c2ac0bc9 Tell Mercurial where to find CA certs (#1873) 2016-09-28 14:58:51 -04:00