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Author SHA1 Message Date
Kevin Huck
35221c127e Updating TAU package. Fixing compiler specification for OSX (#12720) 
and making Fortran an option that can be disabled.  Also added
support for the POSIX I/O wrapper and OMPT for OpenMP.
 2019-09-07 22:44:40 -05:00
Howard Pritchard
1a38285be9 mesa: disable use of libunwind for arm arch (#12735) 
There are problems with libunwind for arm and trying to use it with mesa.
See for example:

https://github.com/grate-driver/mesa/issues/6

disabling use of libunwind for arm, allows the package to be built

Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
 2019-09-07 22:33:30 -05:00
Jonas Lippuner
c3a2528022 add mpi variant to p4est package to allow turning off MPI (#12739) 2019-09-07 22:29:53 -05:00
Axel Huebl
331e4e32be ncurses: improve build time (#12621) 
Apply configure options to skip manpage generation
and test builds for both wide and non-wide builts.
 2019-09-07 22:27:07 -05:00
Ruben Di Battista
ac7a17754f luarocks: Use make command instead of install (#12703) 
This way luarocks does not attempt to pull stuff from the internet.

Fix #3909
 2019-09-07 21:06:52 -05:00
Adam J. Stewart
faa3d6a2a5
Add py-numpy 1.17.2 (#12753) 2019-09-07 20:44:46 -05:00
Piotr Luszczek
bbdb033e5f Add patches to work around CMake versions (#12744) 
- Use of symbol testing macro requires explicit include()
- CMake policies are not version-portable and the support has to queried
  based on CMake version
 2019-09-07 19:04:20 -05:00
Owen Solberg
c4da66be4c font-util 1.3.2 (#12728) 2019-09-07 18:57:22 -05:00
Sinan
754ce972a3 new package: py-pygdal (#12747) 2019-09-07 18:23:38 -05:00
Vanessasaurus
25bbc27716 adding shadow-uidmap (#12750) 
Signed-off-by: Vanessa Sochat <vsochat@stanford.edu>
 2019-09-07 17:36:45 -05:00
Mathias Jacquelin
696e12da98 upcxx: new package 
Adding a UPC++ spack package pointing to the default 2019.3.2 UPC++
version, and allowing to build UPC++ with the experimental CUDA variant.
 2019-09-06 16:04:33 -07:00
Toyohisa Kameyama
5def1dd39d openspeedshop: fixed build on arm. (#11861) 
* openspeedshop: fixed build on arm.

* remove patch comment.
 2019-09-06 13:26:24 -07:00
Geoffrey Oxberry
8fe5405e1b libpeas@1.22.0: new package (#12385) 
* libpeas@1.22.0: new package

* libpeas: note more build dependencies

Build and link dependencies were obtained through a combination of
examining the `config.log` file from `configure` and looking at the
pkg-config files of `libpeas`.

* libpeas: add search path for GIR/typelib files
 2019-09-06 12:53:12 -05:00
Geoffrey Oxberry
071fb3dd6a iso-codes: new package (#12389) 2019-09-06 12:48:08 -05:00
Toyohisa Kameyama
34647913be fftw: change default value of simd variant for other than x86_64 (#11627) 
* Use spec.architecture.target insted of platform.

* remove default in simd variant value.
simd variant change to archtecture independent values.

* Add check simd values.

* rewrite check simd values.

* * flake8
* change aarch64 to arm (neon support only 32 bit arm.)
 2019-09-05 11:42:04 -07:00
Matthieu Dorier
1dbf3c208b FIX Catalyst: corrected catalyst package for aarch64 targets (#12707) 
* corrected catalyst package for aarch64 targets

* corrected syntax

* corrected undefined variable
 2019-09-05 12:44:38 -05:00
Ruben Di Battista
6ef95481ef Add pixz package (#12698) 2019-09-05 09:40:29 -05:00
Jennifer Herting
ca8db06e37 [jemalloc] added version 5.2.1 (#12706) 2019-09-05 09:39:42 -05:00
Hironori-Yamaji
ed6a2f0ef9 textparser: new package (#12713) 
* textparser: new package

* textparser: use 'parallel = False'
 2019-09-05 09:37:21 -05:00
Michael Kuhn
ad93f47c8f mariadb: Add missing dependencies (#12715) 
Found while building mariadb in a minimal build environment.
 2019-09-05 09:34:44 -05:00
Janne Blomqvist
30756a643b py-ase: New version 3.18 (#12697) 
* py-ase: New version 3.18

Add ASE version 3.18. ASE 3.18 has dropped support for python 2.x,
hence add a dependency on python@3.5: for it.

* Add more ASE dependencies

Address review comments, add dependencies on py-scipy, py-matplotlib,
py-flask, and also add type=('build', 'run') dependency specifiers.
 2019-09-05 09:09:37 -05:00
Toyohisa Kameyama
e50dbe6f76 cctools: fixed to build on ARM. (#11862) 2019-09-04 16:45:41 -07:00
Paul Bryant
cb2d18c1e6 Add Go 1.13 2019-09-04 15:04:51 -07:00
t-karatsu
e08f527004 openblas: Add route to f_check for Fujitsu compiler. (#11804) 2019-09-04 15:01:58 -07:00
asmaahassan90
00b02fd234 Add gams recipe (#12700) 
* Add gams recipe

* Break down lines to pass lint
 2019-09-04 10:13:58 -05:00
t-karatsu
fc9e17289a boost: add -c option to C/C++ compile commands for clang. (#12694) 2019-09-04 10:07:31 -05:00
Mario Melara
407834fffa cppflags point to ncurses headers (#12691) 
While debugging this package on our Cray machine, tmux was throwing an
error involving the ncurses headers. Tmux would look for headers in
system locations rather than where spack installed ncurses. Tested only
on a Cray.
 2019-09-04 10:06:35 -05:00
asmaahassan90
5953336c3e Add tecplot recipe (#12688) 
* Add tecplot recipe

* break down description to pass lint

* fix format to match python 2.6 requiremnets

* importing os
 2019-09-04 09:25:43 -05:00
Matthieu Dorier
3181021c11 Boost: fixed problem when requesting ~signals for boost >= 1.69 (#12627) 
* fixed problem when requesting ~signals for boost >= 1.69

* added checks for all libs in with_libs
 2019-09-04 09:25:00 -05:00
Sinan
d7ef97392c new package: liblas (#12619) 
* new package: liblas

* explicitly disable build options

* fix indentation
 2019-09-04 09:20:38 -05:00
Peter Scheibel
868f7869e0
py-chardet package: add py-pytest-runner dependency (#12692) 
This required dependency was missing
 2019-09-03 14:56:53 -07:00
Sinan
c14b7379f9 new package: protobuf-c (#12634) 
* new package: protobuf-c

* Update var/spack/repos/builtin/packages/protobuf-c/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
 2019-09-03 16:16:50 -05:00
t-karatsu
ae41ef9146 Boost/Change the method for analysis version (#12676) 
* boost:Change the method for analysis version when using Fujitsu compiler.

* Change version to apply patch for Fujitsu.

* fix typo
 2019-09-03 09:27:48 -05:00
Hironori-Yamaji
9e1800d81c pmlib: new package (#12625) 
* pmlib: new package

* pmlib: fix options and add patch

* pmlib: fix the patch file
 2019-09-03 09:26:47 -05:00
Hironori-Yamaji
6ea27cabd6 ccs-qcd: new package (#12681) 
* ccs-qcd: new package

* ccs-qcd: fix variant and replacement string
 2019-09-03 09:15:34 -05:00
Todd Gamblin
da7fed86a8 tests: add tests for spack extensions command 
- add tests for `spack extensions`
- refactor `test_activations` test to use real extensions.
 2019-09-02 19:24:48 -07:00
Michael Kuhn
9b8f1fdc40 esmf: Fix build with gcc@8: (#12678) 2019-09-02 10:02:17 -05:00
asmaahassan90
6a791db72d Add XSSP recipe (#12679) 2019-09-02 10:00:57 -05:00
Michael Kuhn
d7a92adb93 icu4c: Add missing python dependency (#12683) 2019-09-02 09:52:51 -05:00
asmaahassan90
c184e79b91 Add fpocket (#12675) 
* Add fpocket

* fix recipe

break down the description to pass lint

* update license

* make changes as per maintainer's review
 2019-09-02 09:51:53 -05:00
asmaahassan90
4e487bf308 Install the newest version of ncbi-rmblastn (#12580) 
* Install the newest version of ncbi-rmblastn

Version ncbi-rmblastn 2.2.28 coonfiguration fails for gcc compiler on ubuntu 16.04 due to some compatibility issues that requires manual intervention to keep the installation going. However you still stumble upon other issues while compiling it.
Using Intel compiler passes the configuration step but fails for the compilation process as well.

Here I'm using the latest version and patch, and the recommended configuration option as mention in http://www.repeatmasker.org/RMBlast.html

* uploading ncbi-blast patch
 2019-09-01 11:11:15 -05:00
Kevin Manalo
421310a037 IDBA: package does not need conflicts with other compilers (#12674) 2019-09-01 11:08:05 -05:00
asmaahassan90
d3b89083f3 Add Vesta recipe (#12581) 
* Add Vesta recipe

* Break down description to pass lint

* Make changes as maintainers' review

* remove whitespaces
 2019-09-01 10:41:57 -05:00
健美猞猁
8c9e14486b A new package: fastp. (#12671) 
* A new package: fastp.

* Flake8.

* Flake8.
 2019-09-01 00:01:35 -05:00
Sinan
bb28028608 new package: py-requests-oauthlib (#12548) 
* new package: py-requests-oauthlib

* add a version

* fix typo
 2019-08-31 15:13:04 -05:00
Sinan
6723032440 new package: py-systemd-python (#12595) 2019-08-31 14:57:03 -05:00
Glenn Johnson
1a8ece4504 Add MKL variant to Julia (#12602) 
This PR provides an option to build Julia with Intel MKL.
 2019-08-31 14:48:40 -05:00
Sinan
6ec5cf4bf0 new package: optipng (#12608) 2019-08-31 14:41:06 -05:00
Sinan
ed59a94d04 new package: pngquant (#12609) 2019-08-31 14:40:26 -05:00
Sinan
da48112812 new package: pktools (#12611) 
* new package: pktools

* rename and enable utilities

* enable build with FANN

* add variants, dependencies

* expcitly turn off options when not in use
 2019-08-31 14:39:51 -05:00