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Author SHA1 Message Date
Satish Balay
297f8537b5
trilinos: superlu_dist patch is now in trilinos develop - so removing it (#9422) 
https://github.com/trilinos/Trilinos/pull/3209
 2018-10-03 09:52:12 -05:00
Satish Balay
846e2c7ca9
PETSc: configure use CFLAGS,FFLAGS,CXXFLAGS from spack (#9383) 2018-10-03 08:19:43 -05:00
alcharal
c46a7a61f0 Abyss: added variant maxk (#9280) 2018-10-02 17:27:25 -07:00
dorier
8f29fbb605 Adding new versions to Catalyst package (#9267) 2018-10-02 17:25:56 -07:00
Mario Melara
eff3ad3346 Spades: add version 3.12 (#9286) 2018-10-02 17:24:39 -07:00
sknigh
d056427a00 Added cudnn 7.3 (#9400) 2018-10-02 17:24:13 -07:00
sknigh
89ccaa2472 Added perl 5.28 (#9379) 2018-10-02 15:48:28 -07:00
Abhinav Bhatele
0352b4808e [WIP] Release 2.0 of the ECP Proxy Apps suite (#9368) 
* Release 2.0 of the ECP Proxy Apps suite

* update laghos version

* make install dir structure consistent across all ecp-proxy-apps

* minor

* update macsio version
 2018-10-02 16:35:41 -06:00
Gregory Lee
676b3b0364 added py-matplotlib version 3.0.0 (#9335) 2018-10-02 15:35:06 -07:00
Abhinav Bhatele
d962e65cf2 PICSAR: new package (#9411) 2018-10-02 16:04:49 -06:00
rvinaybharadwaj
46a9121f00 Spackage for Thornado-mini (#9363) 2018-10-02 16:03:58 -06:00
Abhinav Bhatele
f6fb176d10 PICSARlite: actually builds PICSARlite now instead of PICSAR (#9410) 
also removed variants which shouldn't be there
 2018-10-02 15:46:31 -06:00
Abhinav Bhatele
1ba061f6ec MACSio: update package (#9412) 2018-10-02 15:46:09 -06:00
David Orman
e8af5847a0 Intel parallel studio 2019 cluster edition (#9295) 
* untracking file

* intel-parallel-studio: added 2019 cluster edition and checksum
 2018-10-02 13:04:57 -05:00
Abhinav Bhatele
25be114f75 new package: TraceR (#9298) 2018-10-02 11:04:11 -07:00
Justin Stanley
4e031d25a4 raxml: build all matching variants (#9377) 2018-10-02 09:20:47 -05:00
Prasanna Balaprakash
658e42ae3f ytopt: new package (#9403) 2018-10-01 23:16:32 -07:00
Geoff Womeldorff
922c1a5652 kokkos: bugfix for case wherein kokkos backends enabled in spack but not parsed correctly (#9396) 2018-10-01 17:36:55 -06:00
Matthias Diener
f38bfde6f3 nvptx-tools: add new package (#9378) 
* nvptx-tools: add new package

* Update package.py

* Update package.py
 2018-10-01 16:55:41 -05:00
Ricardo Silva
d031bd7461 patching p4est to select the proper openmp lib (#9381) 
* patching p4est to select the proper openmp lib

* For when compiler.openmp_flag isn't supported

* authored by @nrichart, I only tested it

* Adding openmp variant

Signed-off-by: Ricardo Silva <ricardo.silva@epfl.ch>
 2018-10-01 22:43:40 +02:00
Geoff Womeldorff
57236fa2ce kokkos: add serial backend explicitly. add kokkos options and kokkos cuda options. (#9276) 2018-10-01 10:24:43 -06:00
Justin Stanley
691a19226c redundans: add py-numpy dep, snap-berkeley version constraint (#9354) 2018-10-01 05:54:50 -05:00
Abhinav Bhatele
a6ab5edea6 Laghos: add version 1.1 (#9389) 2018-09-30 05:38:52 -06:00
Justin Stanley
bf757bd231 lighttpd: install to bin vs sbin (#9337) 2018-09-28 18:38:51 -07:00
Justin Stanley
ad13a9989f gsnap: add 2018-07-04 (#9356) 2018-09-28 17:07:08 -05:00
Levi Baber
017199b5d6
py-flake8-polyfill: removing unnecessary build_args (#9284) 2018-09-28 14:49:45 -05:00
Levi Baber
6ac167a891
libsigcpp: add a real homepage (#9282) 2018-09-28 14:48:31 -05:00
Aronnax, Miles V. [ISU/LAS]
e9863f56f3 Gapfiller 1.10 f01 (#9163) 
* GapFiller.pl fixes: line endings, env perl, convert to Getopt::Std, requires perl with threads.

* GapFiller.pl fixed source path, install location.

* Fixed missing space.
 2018-09-28 14:45:54 -05:00
Justin Stanley
d6daa8fab5 perl-dbd-sqlite: new package starting at 1.56 (#9338) 2018-09-28 14:08:14 -05:00
Levi Baber
6d0b3f0e71
r-biocparallel: new link dependency added in last version (#9274) 2018-09-28 13:56:46 -05:00
Levi Baber
5d3fb74e24
r-misc3d: add a real homepage (#9283) 2018-09-28 13:54:50 -05:00
Justin Stanley
43ae3bd2c9 perl-cgi: new package starting at 4.37 (#9339) 2018-09-28 13:53:40 -05:00
Justin Stanley
a5d6f79fe0 r-rots: fix package type (#9344) 2018-09-28 13:11:09 -05:00
Serban Maerean
2ac648407e Add PETSc 3.10.1 to PETSc's spackage file (#9382) 
* Add version 3.10.1 to the PETSc spackage file.
* Makefile changes required for building PETSc native tests with the XL compiler.
 2018-09-28 10:46:21 -07:00
snehring
3c713661b8 gmap-gsnap: set default value for simd variant (#9366) 
Also add zlib/bzip2 dependencies.
 2018-09-28 10:41:41 -07:00
Mark W. Krentel
f641a72a8b libpfm4: add version and compiler flags (#9291) 
Set default optimization level (-O2) if not specified in cflags.
 2018-09-28 10:36:27 -07:00
Denis Davydov
2cd7783e9e mpich: fix 3.2 patch (#9330) 
patch does not apply to 3.2.1 (released in late 2017).
Given that it fixes the issue discussed in May 2016, most likely
it shall apply only to 3.2
 2018-09-28 08:18:55 -05:00
Eric Müller
1e75aef0e9 Bazel: update env handling, add versions (#9369) 
Building bazel yielded errors since commit cd9691d. The first commit
fixes the build for older bazel versions, the second commit adds new
versions and ports the patches to these versions.
 2018-09-27 19:37:31 -07:00
sknigh
bd801da1bf Set libs property for tcl and tk (#9372) 2018-09-27 19:34:18 -07:00
sknigh
496bc3cd23 Added legacylaunchers variant to openmpi (#9336) 
Lots of programs still have mpiexec/mpirun baked in.
 2018-09-27 19:29:15 -07:00
sknigh
5047d86732 yaml-cpp: conflict with gcc 4.7 instead of 4.8 (#9371) 
4.8 has c++11 support, and RHEL/Centos 7 still use 4.8.5
 2018-09-27 13:37:36 -07:00
sknigh
7db31c6671 Added slurm 17.11 and 18.08 (#9345) 2018-09-27 13:34:41 -07:00
sknigh
2155163a37 Added Cuda 10 (#9310) 2018-09-27 13:33:53 -07:00
Abhinav Bhatele
37918e0536 ember: put all READMEs into docs and add executables in bin (#9362) 2018-09-27 05:49:15 -06:00
dorier
9e448d4c4f py-pybind11: add version 2.2.4 (#9355) 2018-09-26 19:19:46 -07:00
Denis Davydov
12c59c5b55 arpack-ng: add version 3.6.3 (#9331) 2018-09-26 19:12:41 -07:00
Justin Stanley
e41677b560 new package: r-processx (#9342) 2018-09-26 19:12:06 -07:00
Justin Stanley
bf4ac40ade new package: r-ps (#9341) 2018-09-26 19:08:55 -07:00
Justin Stanley
b35dccf875 paml: remove old version, added 4.9h (#9360) 2018-09-26 19:03:35 -07:00
Daniel Topa
c9d8226bc6 new package versions: ucx, libhio, and hwloc (#9365) 2018-09-26 18:53:54 -07:00
Abhinav Bhatele
d0ed39f51a miniVite: new package (#9348) 2018-09-26 19:48:34 -06:00
Abhinav Bhatele
41b35a783e fix build errors, make mpi variant default and add openmp variant (#9364) 2018-09-26 19:47:51 -06:00
Peer-Timo Bremer
2f28bd7d7f new package: TALASS (#9326) 2018-09-26 18:15:47 -07:00
Abhinav Bhatele
d5cdb1a2a7 update URLs for Laghos and MACSio (#9351) 2018-09-26 17:22:05 -06:00
dorier
4be8ae2b70 VTK package: don't require "+llvm" for mesa dependency (#9256) 2018-09-26 11:20:01 -07:00
lingnanyuan
f88735c1eb gmap-gsnap: Add variant for different cpu support. (#8087) 
* gmap-gsnap: Add variant for different cpu support.

* gmap-gsnap: fix flake8 error.

* gmap-gsnap: remove sys import.

* Change variant type to multi-valued.

* remove if-statement.

* gmap-gsnap: Build in seperate directories.

* gmap-gsnap: remove make distclean.

* gmap-gsnap: rewrite the recipe.
 2018-09-26 11:56:39 -05:00
Justin Stanley
6c0f0dbdfd qt: fix dbus builds (#9315) 2018-09-25 11:33:19 -05:00
Satish Balay
2c4a057fe4
petsc: add new versions 3.9.4 and 3.10.0 (#9319) 
* petsc: add new versions 3.9.4 and 3.10.0

* petsc:update superlu_dist dependency for version 3.10 [might have to change this later for xsdk]

* slepc: add in new releases 3.9.2 and 3.10.0
 2018-09-24 23:57:38 -05:00
Satish Balay
6b1b84267d superlu_dist: (master) has cxx11 sources - so update make.inc to list cxx11 compilers (#9316) 2018-09-24 21:53:14 -05:00
Justin Stanley
43b0948457 lighttpd: new package starting at 1.4.50 (#9325) 2018-09-24 21:33:39 -05:00
Denis Davydov
79eaa16118 intel: add 2019.0 (#9328) 2018-09-24 21:27:43 -05:00
Strahinja Trecakov
8947b6b909 New package: r-animation (#9314) 
* adding r-animation package
 2018-09-24 11:28:05 -07:00
Strahinja Trecakov
82f19f72f7 new versions of r-dplyr,r-plogr,r-rlang (#9313) 2018-09-24 11:22:04 -07:00
rvinaybharadwaj
e227542500 Spack package for PICSARlite (#9288) 2018-09-24 11:12:01 -06:00
rvinaybharadwaj
2656ed63eb Spack package for Ember (#9292) 2018-09-21 13:04:39 -06:00
Andrew Gaspar
72be5c86fa Add newer versions of spdlog (#9290) 2018-09-20 17:53:15 +02:00
sknigh
2bc895083b Added llvm 7.0.0 (#9296) 2018-09-20 17:21:42 +02:00
Axel Huebl
9e2ff95ec5 Catch2: 2.3.0+ (#9300) 
* Catch2: 2.3.0+

Add the latest two releases of Catch2.
In 2.3.0+, the include changed to a future-proof
`<catch2/catch.hpp>` path which dependent projects will break upon.

* openPMD-api: Catch2 2.3.0+

openPMD-api just updated to use the new, future-proof Catch2
headers `<catch2/catch.hpp>`.
 2018-09-20 15:55:18 +02:00
Christoph Junghans
7b2b2fb969
sw4lite: add v1.1 (#9289) 2018-09-19 13:30:28 -06:00
Adam J. Stewart
133dd7a4ac Fix version parsing for cistem package (#9260) 
Adds 'code' to the list of suffixes that are excluded from version
parsing of URLs, such that if a URL contains the string
'cistem-1.0.0-beta-source-code', a version X will substitute in to
produce a URL with cistem-X-source-code ('source' was already excluded).
The 'cistem' package version is updated to make use of this (and fix
a fetching bug with the cistem package). A unit test is added to check
this parsing case.
 2018-09-18 19:29:18 -07:00
sknigh
467d501060 sst-macro package: add versions and variants (#9271) 
Added variants for: mpi support, clang skeletonizer, building as
static and/or shared, and more.
 2018-09-18 19:06:13 -07:00
Geoffrey Lentner
3f04ebf600 hadoop package: fix url and checksum (#9263) 2018-09-18 18:49:52 -07:00
Geoffrey Oxberry
c971f6f1eb apple-libunwind: update path to library (#9265) 2018-09-18 18:48:53 -07:00
Levi Baber
d14971b061 new package: rclone (#9268) 2018-09-18 18:39:07 -07:00
Howard Pritchard
21884d804f libhio: add patch for 1.4.1.2 release (#9270) 
Turns out that there was a configury problem in libhio
which caused issues building the package on non-cray
systems, aka when using mpicc and friends.

Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
 2018-09-18 17:26:34 -06:00
Christoph Junghans
41de79a1b6
xsbench: added v18 (#9269) 2018-09-18 14:07:37 -06:00
Christoph Junghans
5135f03c03
Packages/candle benchmarks (#9266) 
* candle-benchmarks: added v0.1

* ecp-proxy-apps: v1.0 now depends on candle-benchmarks@0.0
 2018-09-18 13:02:03 -06:00
Douglas Duckworth
842d754338 star - added latest versions with shasum (#9257) 
* star - added latest versions with shasum

* star - added latest versions with shasum
 2018-09-16 15:44:33 -05:00
Geoffrey Oxberry
f9aed03e83 coinhsl: add @2015.06.23, explain versions, SHA256 (#9258) 2018-09-16 15:03:26 -05:00
Pramod Kumbhar
50378c15a9 Update rdma-core : new version and conflict with intel (#9255) 
* Update rdma-core : new version and conflict with intel

* address review comments
 2018-09-15 19:42:45 -05:00
toffer93
b3bdf92f26 changed to new install_tree formalism (#9181) 2018-09-15 09:40:50 -05:00
Matthias Diener
4942237278 gdb: add lzma support by default (#9247) 
This is required at least on RedHat/Fedora.

Many (most?) other people distribute gdb with this support enabled:
http://tomszilagyi.github.io/2018/03/Remote-gdb-with-stl-pp
https://bugzilla.redhat.com/show_bug.cgi?id=1596490
 2018-09-15 09:06:16 -05:00
Levi Baber
3f9fc0f765 breakdancer: fix several issues (#9251) 
* add perl dependencies
* put bam2cfg in path
* fix perl dir
 2018-09-14 20:11:34 -07:00
Miles Perry
301643bdc4 Feature/py picrust (#9184) 2018-09-14 17:24:17 -07:00
Michael Kuhn
c2f6c98ed9 rdma-core: Fix missing pkg-config dependency (#9195) 
rdma-core requires pkg-config, otherwise libnl can not be found.
 2018-09-14 17:21:05 -07:00
Justin Stanley
b09ece58f6 jdk: added 10.0.2_13 (#9203) 2018-09-14 17:17:32 -07:00
Jon Rood
8f80ee7a40 Updating amrvis to allow building with profiling support. (#9204) 
* Updating amrvis to allow building with profiling support.
* Setting MPI default to true.
 2018-09-14 17:16:35 -07:00
Stephen Hudson
ae1420bffc Update py-libensemble package to v0.3.0 (#9210) 2018-09-14 17:15:31 -07:00
Stephen McDowell
ea3c59ed37 add eigen@3.3.5 (#9212) 2018-09-14 17:14:46 -07:00
Geoffrey Oxberry
affea920cf hypre: patch +shared@2.13.0: on darwin (#9220) 2018-09-14 17:14:30 -07:00
snehring
fa5bf11f16 plumed: updating plumed to latest version (#9227) 2018-09-14 17:13:22 -07:00
Sergey Kosukhin
a9c434d7d7 Build Python 3.7 with external libffi. (#9245) 2018-09-14 17:07:13 -07:00
Stephen McDowell
0b800720b1 add opencv@3.4.3 (#9213) 2018-09-14 17:05:05 -07:00
Stephen McDowell
4c41413550 patch flann // gcc // cmake@3.11+ (#9214) 
See: https://github.com/mariusmuja/flann/issues/369
 2018-09-14 17:01:58 -07:00
Abhinav Bhatele
055b0a442c Charmpp: rename charm to charmpp according to ++ conventions (#9216) 
* Charmpp: rename charm to charmpp according to ++ conventions
* modify packages that depend on charmpp
 2018-09-14 17:01:07 -07:00
Levi Baber
e07aef88f8 py-spectra: new version (#9224) 2018-09-14 16:59:50 -07:00
Mario Melara
5b9cbb518a OpenCoarrays: update v2.2.0 (#9215) 
This commit adds a patch that prevents the package from hanging. The package would hang because CMakeLists would look for a system MPI. This patch changes the behavior.
 2018-09-14 16:59:19 -07:00
Christoph Junghans
9661748900 miniamr: added v1.4.1 (#9225) 2018-09-14 16:56:59 -07:00
Adam J. Stewart
cca6b673db py-h5py: add version 2.8.0 (#9231) 2018-09-14 15:56:44 -07:00
Justin Stanley
8276256875 portcullis: new package starting at 1.1.2 (#9218) 2018-09-14 15:55:58 -07:00
Abhinav Bhatele
3bb12e3804 miniQMC: add newer releases and ecp-proxy-app tag (#9233) 2018-09-14 15:54:21 -07:00
Geoffrey Oxberry
69a9a3291a ipopt: add debug variant (#9223) 2018-09-14 15:53:25 -07:00
Geoffrey Oxberry
a76aa36481 hypre: add debug variant (#9222) 2018-09-14 15:53:06 -07:00
Levi Baber
62208afdb9 py-multiqc: needs newer py-spectra (#9226) 2018-09-14 15:52:29 -07:00
Levi Baber
3c33b5efef py-networkx: new version (#9241) 2018-09-14 15:52:02 -07:00
Levi Baber
617ff8f125 py-decorator: new version (#9240) 2018-09-14 15:51:43 -07:00
Levi Baber
49aed4584b py-markdown: fix url and hashes (#9235) 2018-09-14 15:51:20 -07:00
Levi Baber
f52812e571 perl-gdgraph-histogram: new package (#9250) 2018-09-14 15:50:18 -07:00
Ken Raffenetti
881af613b3 bolt: new package starting at 1.0b1 (#9253) 2018-09-14 15:49:36 -07:00
Justin Stanley
31da752402 metasv: add required dependencies (#9254) 
* add runtime deps
* revert to strict dep versions
 2018-09-14 15:49:11 -07:00
Ken Raffenetti
17d4005a4f argobots: new package starting at 1.0b1 (#9238) 2018-09-14 15:48:40 -07:00
Justin Stanley
dda27fc0d1 rmats: new package starting at 4.0.2 (#9243) 
* new package starting at 4.0.2
 2018-09-14 14:54:26 -07:00
Douglas Duckworth
716ed92e32 motioncor2 - added version 1.1.0 and removed old, unlisted versions (#9229) 2018-09-14 13:57:22 -07:00
Matthias Diener
36f396ad5b gdb: add version 8.2 (#9246) 2018-09-14 13:56:15 -07:00
Justin Stanley
ff6b9b99fa gatk: new version (#9202) 
* gatk: added 4.0.8.1, fixed binary install
* gatk: fix flake8 conflict
* gatk: improve comments and modify install
 2018-09-14 13:55:52 -07:00
Justin Stanley
451328d6e6 mxnet: added 1.3.0 (#9236) 
* add version 1.3.0
* change build parameters, install process
  * mxnet will not compile against spack's nnvm and dmlc so we must use
    the distributions provided by the source package.
* also removed 'bin' installation as mxnet is just a shared library.
* improve BLAS linking
* remove unnecessary args
* added variant for python bindings
 2018-09-14 11:01:30 -07:00
sknigh
24dd24600c Added Kibana package, added Elasticsearch to 6.4.0 (#9239) 
* Added kibana, updated elasticsearch
* Update elastic search to 6.4
 2018-09-14 10:50:20 -07:00
Daniel Topa
056960870b Hwloc add update 2.0.2 (#9244) 
Signed-off-by: Daniel Topa <dantopa@lanl.gov>
 2018-09-14 10:48:38 -07:00
Levi Baber
0ed58374e7 py-colormath: new version, requires newer networkx (#9237) 
* py-colormath: new version requires newer networkx
 2018-09-14 10:35:45 -07:00
Matthias Diener
466bc20874 cmake: add version 3.12.2 (#9248) 2018-09-14 09:36:39 -07:00
Neil Flood
1122fc3d1e r-nloptr: Explicit depends_on(nlopt). Previously there was a hidden d… (#9176) 
* r-nloptr: Explicit depends_on(nlopt). Previously there was a hidden dependency, masked by the package's configure script.

* r-nloptr: Change spelling of variables to satisfy pyflake8

* r-nloptr: Break a long line to satisfy pyflake8

* r-nloptr: larger indent on continuation, to satisfy pyflake8

* r-nloptr: another attempt at larger indent on continuation, to satisfy pyflake8

* r-nloptr: now a smaller indent on continuation, to satisfy pyflake8

* r-nloptr: Another attempt at right amount of indent.

* r-nloptr: Another attempt at right amount of indent.

* Use the correct attributes for finding the nlopt includes and libs.

* Lines too long, split into pieces
 2018-09-14 08:11:16 -05:00
Christoph Junghans
98d8c4d7ca
py-espresso: apply patch to v4.0.0 only (#9196) 2018-09-13 10:00:21 +00:00
Abhinav Bhatele
1e2b3b0768 AMG: update version (#9228) 2018-09-12 14:11:05 -06:00
Ricardo Silva
62977662e9 petsc: fix compilation with intel (#9198) 
* mpiifort doesn't automatically link all run-time libraries
* scalapack was being picked up accidentaly if intel-mkl was in the spec
 2018-09-12 11:18:41 -07:00
Abhinav Bhatele
ff13f3953e ecp-proxy-apps: update dependencies for release 1.0 and 1.1 (#9217) 2018-09-11 15:10:49 -06:00
Tristan Carel
6d0933b2a0 steps: new package starting at 3.3 (#9173) 2018-09-11 14:43:15 +02:00
Adam J. Stewart
ccbff6e0cd
Improve spec['python'].command support for bwpy (#9157) 2018-09-10 17:14:57 -05:00
Christoph Junghans
3dcbe50eb7 py-espresso: added v4.0.0 (#9192) 
Added v4.0.0 and workaround for cmake bug
 2018-09-10 08:55:32 +02:00
Satish Balay
a537d7b56e
trilinos: disable xlf_tpetra.patch for trilinos@develop (#9193) 
This patch does not apply cleanly anymore and breaks clang/Mac builds

balay@asterix /home/balay/git-repo/github/trilinos (develop=)
$ patch -Np1 < /home/balay/git-repo/github/spack/var/spack/repos/builtin/packages/trilinos/xlf_tpetra.patch
can't find file to patch at input line 3
Perhaps you used the wrong -p or --strip option?
The text leading up to this was:
--------------------------
|--- a/packages/tpetra/core/src/Tpetra_Details_libGemm.cpp
|+++ b/packages/tpetra/core/src/Tpetra_Details_libGemm.cpp
--------------------------
File to patch:
 2018-09-08 23:51:16 -05:00
Satish Balay
8afc630e96
assimp: fix compile issues with intel compilers on knl/linux [a depen… (#9191) 
* assimp: fix compile issues with intel compilers on knl/linux [a dependency for dealii]

Fixes issue #9189

* assimp: add variant 'shared' with default value 'True'
 2018-09-08 16:18:37 -05:00
Denis Davydov
ffca064778 xsdk: disable assimp in deal.II (#9190) 2018-09-08 16:07:37 -05:00
Josh Deaton
7295c8aaad libMesh: New variant and updated recent versions. (#9186) 
* libmesh: Added SLEPC eigensolver variant.

* libmesh: Added new versions.

* Corrected flake8 errors.

* Corrected SLEPc variant with proper config & conflicts.
 2018-09-07 21:13:34 -07:00
Mike Pozulp
e678266550 Tanim (#9158) 
* Added jdk version, added r-ks and r-multicool packages, made some r packages less conservative in their r version requirement

* flake8 fixes

* fix formatting in jdk version cmd

* Added type=('build', 'run') to some R package dependencies,
added some missing dependencies to r-ks. Thanks Adam.

* fix flake8 error
 2018-09-07 16:00:52 -05:00
Denis Davydov
18ca196753 xsdk: add dealii (#7529) 2018-09-06 19:22:17 -05:00
Satish Balay
b6b8c7058a
Balay/xsdk trilinos develop (#9182) 
* xsdk: update xsdk@develop dependency on trilinos@develop

* trilinos: enable tpetra, ifpack2, zoltan2, amesos2
 2018-09-06 12:01:53 -05:00
Tristan Carel
733458347a gmodel: new package starting at 2.1.0 (#9170) 2018-09-06 10:48:08 +02:00
Tristan Carel
26b68a2bc5 gmsh: add git master and 4.0.0 versions (#9172) 2018-09-06 10:42:40 +02:00
Axel Huebl
901d76ef53 openPMD-api: ^py-numpy@1.15+ (#9178) 
Due to an internal bug regarding the handling of scalars
(ndim must be 0) in numpy prior to 1.15.0, openPMD-api
will require the latest numpy 1.15+.

Since there is a small regression with datetime pickling in
1.15.0 from the required fix and spack only packages 1.15.1
currently, we depend on 1.15.1 in the recipe.
 2018-09-06 10:41:45 +02:00
Tristan Carel
a779e87442 omega-h: add versions and variants (#9169) 
* add 5 most recent versions and git master branch
* add trilinos, gmodel, throw, examples, optimize, symbols,
  and warnings variants
* disable XSDK so that Trilinos dependencies are found.
 2018-09-05 11:01:45 -07:00
健美猞猁
501669faba Pack dlang's stdlib into dmd. (#9131) 
* Update dmd.

* Build dmd and druntime.

* Build dmd.

* Restore edit.

* Flake8.
 2018-09-04 14:49:28 -05:00
健美猞猁
8b9b89b931 Onedrive: a new package. (#9130) 
* skilion-onedrive: a new package.

* Fix flake8 issues.
 2018-09-04 14:35:49 -05:00
健美猞猁
9fe7000dda Bamdst: a new package. (#9113) 
* Bamdst: a new package.

* Remove duplicate make() in install().
 2018-09-04 14:35:33 -05:00
Levi Baber
5737155dd0 trinity: full dependencies (#9064) 2018-09-04 14:35:06 -05:00
Levi Baber
059daa2012 r-summarizedexperiment: new version (#9054) 
* r-summarizedexperiment: new version

* r-summarizedexperiment: add ending range for r3.4 dep

* r-summarizedexperiment: fix range
 2018-09-04 14:34:45 -05:00
Miles Perry
447db2fe8d Feature/py pycogent New-Version (#9095) 
* added py-pycogent

* flake8 edits

* added type=('build', 'run') to deps, changed py-matplotlib and mpi4py

* changed python min version to 2.6

* fixed cython to py-cython dep

* fixed mpi4py to py-mpi4py

* fixed py-sqlalchemy

* added 1.5.3 version

* fixed version 1.5.3 install

* changed deps names to reflect convention

* added variants

* changed download URL and added SHA256 hash

* fixed deps

* added github url for 1.5.3

* removed unneeded deps

* doesn't require py-setuptools

* fixed url and added py-setuptools specific to version 1.9

* fixed variant names and changed cython to normal dependency instead of variant

* removed cython dep, failed to build when it was present. Changed variant name 'mpi4py' to 'mpi' and changed sqlalchemy variant name to mpi

* fixed dependencies and added py-pymysql dep

* added setup-environment step

* changed download url for 1.5.3 to pypi

* fixed flake8 issue

* updated

* added changes
 2018-09-04 14:34:18 -05:00
Francesco Di Natale
e85f737d1f py-maestrowf: Addition of new releases. (#9135) 
* Addition of latest maestrowf releases.

* Addition of filelock to dependencies.

* Addition of when clause to depends_on for filelock and tabulate.

* Correction of the tar url.
 2018-09-04 14:33:55 -05:00
Levi Baber
3c9b0ee2ea r-genomicalignments: new version (#9055) 
* r-genomicalignments: new version

* r-genomicalignments: ending range for r3.4 dep

* r-genomicalignments: fix range
 2018-09-03 21:04:22 -05:00
Levi Baber
35d87bdf09 r-biomart: new version; (#9058) 
* r-biomart: new version;

* r-biomart: ending range for r3.4 dep

* r-biomart: fix version range
 2018-09-03 21:03:47 -05:00
Levi Baber
cb9a95fc37 r-deseq2: new version (#9062) 
* r-deseq2: new version

* r-deseq2: fix r 3.4 dep range
 2018-09-03 21:03:08 -05:00
Hadrien G
930e266a36 New package: AIDA (#9094) 
* Trying to package old AIDA

* Document the incompleteness

* Install the jars too
 2018-09-03 21:02:06 -05:00