Commit graph

14830 commits

Author SHA1 Message Date
Andrew W Elble
108a0c99f1
TensorFlow: Make horovod compilation work (#15692)
* TensorFlow: Clean up/simplify the installation, make sure the headers are
installed so that horovod can find them successfully. Fix the 2.0.* builds.

* Backport of 837c8b6b upstream
"Remove contrib cloud bigtable and storage ops/kernels."
Allows 2.0.* releases to build with '--config=nogcp'

* comment regarding tensorflow issue #31187

Co-authored-by: Andrew W Elble <aweits@skl-a-00.rc.rit.edu>
2020-03-27 10:51:04 -05:00
Toyohisa Kameyama
7df7b65cec
ppOpen-AT: New package (#15649)
* ppOpen-AT: New package

* use install instead of install-after.

* use install_tree.

* forget remove mkdir.
2020-03-27 08:16:48 -05:00
Brian Homerding
420b5dd4b9
MpiP: adding variant to build shared libraries (#10410) 2020-03-27 12:07:57 +01:00
darmac
e1238bae90
dpdk: added new package at v20.02 (#15635) 2020-03-27 10:21:16 +01:00
darmac
6a33c269bd
sshpass: added new package (#15704) 2020-03-27 08:44:41 +01:00
iarspider
97c3addad3
cppgsl: added v2.1.0 (#15696)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-03-27 08:42:50 +01:00
Fabian Brandt
dcc4aabce1
New package libtlx (#15650)
* New package libtlx

* Replaced dash characters with ascii dash
2020-03-26 22:55:27 -05:00
Michael Kuhn
5f06e50902
meson: Add 0.53.2 and fix setuptools dependency (#15674)
py-setuptools is actually required for running meson.
2020-03-26 22:50:20 -05:00
Hector
0ebed5a618
fix gdb installation (#15679)
* fix gdb installation

* add reference url
2020-03-26 22:45:47 -05:00
Sinan
2828815a49
add new versions (#15688)
Co-authored-by: Sinan81 <Sinan81@github>
2020-03-26 22:41:57 -05:00
noguchi-k
5cb4db8570
gtkorvo-dill: fix argument type of clear_cache (#15689) 2020-03-26 22:41:25 -05:00
Toyohisa Kameyama
8293660217
ppOpen-MATH/MP: New package. (#15690)
* ppOpen-MATH/MP: New package.

* Fix quote.
2020-03-26 22:40:22 -05:00
Seth R. Johnson
e989c05cd0
Add include-what-you-use (#15691) 2020-03-26 22:38:56 -05:00
iarspider
209c7e3ddd
xrootd: new version (4.11.2) (#15694) 2020-03-26 22:37:56 -05:00
iarspider
bbc76c3551
fmt: new version (6.1.2) (#15695) 2020-03-26 22:37:33 -05:00
iarspider
640df9c20b
range-v3: add new version (0.10.0) (#15697) 2020-03-26 22:36:24 -05:00
Roman Briskine
ef7837410e
Fix non-root installations; update homepage (#15701) 2020-03-26 22:32:19 -05:00
Jennifer Herting
7b4354b4c3
genometools: added v1.6.1 (#15657) 2020-03-26 15:01:24 +01:00
Andrew Gaspar
a0c8686105
catch2: added versions up to v2.11.3 (#15680) 2020-03-26 12:46:39 +01:00
Toyohisa Kameyama
9e51ba80c7
ppOpen-Math/VIS: added new package (#15665) 2020-03-26 08:37:25 +01:00
darmac
9f5873324e
kmod: added package at v27 (#15633) 2020-03-26 07:50:28 +01:00
gauthier12
851fb173c8
med package: add version 4.0.0 (#15652) 2020-03-25 19:10:31 -07:00
iarspider
a2801a8deb
OpenJDK: add version 8u222 (#15677) 2020-03-25 19:00:39 -07:00
Carson Woods
9f256ed953
darshan-util and darshan-runtime: add version 3.1.8 (#15681) 2020-03-25 19:00:15 -07:00
Dan Bonachea
e042bd9d89
UPC++ 2020.3.0 update (#15623)
## Summary

This PR updates and improves the Spack package for [UPC++](https://upcxx.lbl.gov).
I'm an LBL employee and developer on the UPC++ team, as well as the maintainer of this Spack package.

### Key Improvements:
* Adding new 2020.3.0 release and support for use of develop/master branches
    - Our build infrastructure underwent a major change in this release, switching from a hand-rolled Python2 script to a bash-based autoconf work-alike. 
    - The new build system is NOT using autotools (nor does it support some of the more esoteric autoconf options), but the user interface for common builds is similar.
* Add explicit support for an MPI optional dependency
    - New `mpi` variant enables use of the MPI-based spawner (most relevant on loosely coupled clusters), and the (unofficial) mpi-conduit backend
    - This variant is OFF by default, since UPC++ works fine without MPI on many systems, increasing the likelihood first-time Spack users get a working build without needing to correctly setup MPI
* Add support for post-install testing using the test support deployed in the new build infrastructure
* Fix or workaround a few bugs observed during testing 

### Status

The new package has been validated with a variety of specs across over seven different systems, including: NERSC cori, ALCF Theta, OLCF Summit, an in-house Linux cluster, and macOS laptops (Mojave and Catalina).
2020-03-25 16:05:13 -07:00
Axel Huebl
9c0b197460
WarpX: MPI, Backends, Ascent (#15647)
Expose serial/parallel build (MPI), CUDA/OpenMP backends, Clang, and
Ascent bindings.

Interestingly, `warpx +ascent` currently leads to an infinite loop in
the Spack concretizer.
2020-03-25 14:54:13 -07:00
Massimiliano Culpo
b42a96df98
provider index: removed import from + refactored a few parts (#15570)
Removed provider_index use of 'import from' and refactored a few routines to a further subclassing of _IndexBase for implementing user defined bindings of provider specs.
2020-03-25 09:48:05 -07:00
Axel Huebl
3aa225cd5c
openPMD-api: added v0.11.1 (#15659)
Add the latest release with HDF5-1.12 compatibility.
2020-03-25 11:57:00 +01:00
xfzhao
f1aec94719
mothur: specify version of vsearch (#15661) 2020-03-25 11:50:30 +01:00
Ben Morgan
2480217387
gitconddb: new package at v0.1.1 (#15651)
Git-based conditions database for HEP and other experiments.

Use latest release version and current master to support Linux and
macOS. Add core known dependencies and conflicts related to C++17
support.

cxxstd variant added to help transitive dependencies, and for future
support for newer standards in future.
2020-03-25 11:28:06 +01:00
Hadrien G
b8db87e1dc
ACTS: added v0.19 (#15671) 2020-03-25 10:49:53 +01:00
Sinan
24ca071652
pocl: add versions up to v1.4.0 (#15672)
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-03-25 10:49:09 +01:00
Jeffrey Salmond
7e1e98cf8f
julia: added v1.4.0 (#15673) 2020-03-25 10:46:04 +01:00
darmac
16eb86acf2
libwebp: fix sha256 checksum (#15639) 2020-03-25 00:07:34 -07:00
Stephanie Brink
4e6c07529d
xz: add version 5.2.5 (#15656) 2020-03-24 23:05:26 -07:00
Matthias Diener
d099143999 charmpp: add version 6.10.1+cleanups
- change URL to http as our server only supports TLSv1.0, which
not all HTTPS clients accept anymore
- change name of development branch to 'master'
2020-03-24 23:04:41 -07:00
Carson Woods
25e50a9943
pmix: add version 2.2.3 (#15668) 2020-03-24 23:01:24 -07:00
Carson Woods
cfa8e69835
singularity: add version 3.5.3 (#15669) 2020-03-24 23:01:00 -07:00
Massimiliano Culpo
1a5e4232ed
spack.repo: remove "import from" statements (#15505)
spack.repo: remove "import from" statements
2020-03-24 14:26:35 -07:00
eugeneswalker
862e13183d
workaround for otf2's erroneous python2 configure requirement (#15653) 2020-03-24 14:11:38 -07:00
Amjad Kotobi
3b7c79b225
r-remotes: added v2.1.1 (#15627) 2020-03-24 10:10:33 +01:00
Tomoki, Karatsu
dfe4e980ea
py-onnx: remove_dllexport_decl. (#15648) 2020-03-24 09:56:39 +01:00
Massimiliano Culpo
1b4de7813a
spack.relocate: add unit test (#15610)
* relocate: removed import from statements
* relocate: renamed *Exception to *Error

This aims at consistency in naming with both
the standard library (ValueError, AttributeError,
etc.) and other errors in 'spack.error'.

Improved existing docstrings

* relocate: simplified search function by un-nesting conditionals

The search function that searches for patchelf has been
refactored to remove deeply nested conditionals.

Extended docstring.

* relocate: removed a condition specific to unit tests
* relocate: added test for _patchelf
2020-03-24 09:02:54 +01:00
Michael Kuhn
7e0ec0ec09 automake: Add 1.16.2 2020-03-23 18:52:02 -07:00
Peter Scheibel
8283068438
Bugfix: remove unit tests that install real packages (#15646)
Our unit tests run many times. Any unit test which actually installs
a package (which involves fetching code on the internet) is a severe
bug because it runs an installation many times (i.e. re-downloading
the same package for each version of Python that we run unit tests
for).

This reverts commit 25893f1, which added tests that install real
packages.
2020-03-23 18:10:44 -07:00
Andreas Baumbach
7b486fd84d py-ics: add version 0.7 2020-03-23 17:04:04 -07:00
Carson Woods
6a18bfbae8
CMake: add version 3.9.2 (#15644) 2020-03-23 17:03:25 -07:00
Carson Woods
e1f593b6c6
lmod: add version 7.8.1 (#15643) 2020-03-23 17:02:46 -07:00
Todd Gamblin
cde4375c96
Vendoring: remove dependency on Setuptools from vendored pytest (#15612)
If the Python used by Spack does not include Setuptools, then
'spack test' will fail because Spack's vendored pytest dependency
imports and uses Setuptools in some of its functions. It turns out
that Spack doesn't use the functionality those methods enable, so
this PR removes those functions and thereby allows 'spack test' to
run without Setuptools.
2020-03-23 16:55:07 -07:00
Todd Gamblin
54a6c25da6
Bugfix (config): enable "spack test" when in an active environment (#15618)
For any Spack test using Spack's YAML configuration, avoid using real
Spack configuration that has been cached by other tests and Spack
startup logic. Previously this was only done for tests using
'mutable_config' (i.e. those which expected to *change* the
configuration of Spack), but in fact all tests that read Spack config
should use it.

This was an issue when running tests within an environment, because
compiler configuration ends up being queried earlier, and the user's
real config "leaks" into the cache. Outside an environment, the cache
is never set until tests touch it, so we weren't seeing this issue.
2020-03-23 15:15:36 -07:00