Commit graph

20876 commits

Author SHA1 Message Date
Massimiliano Culpo
00a1418d10 clingo: don't skip tests that deal with file permissions
When we first merged the ASP-based solver, unit-tests
were run in a Docker container with root permissions
and that was preventing a few tests to succeed.

Since some time though, clingo is tested as a regular
user within Github Actions VMs, so we should start to
run checks again.
2021-05-08 06:14:44 -07:00
lukebroskop
daebf5caf8
craype fix for pdt (#23505)
* craype fix for pdt

adapt the pdt package for cce

* fix style issues
2021-05-07 17:16:13 -07:00
Jerome Soumagne
eb273f5c2f
mercury: add version 2.0.1 (#23521) 2021-05-07 17:10:14 -07:00
lukebroskop
c1b314e564
CrayPE fix for pfunit (#23512)
allow cce to be the compiler
2021-05-07 17:08:41 -07:00
dsjense
45f84ee548
Bugfix/matplotlib clang lto (#23519)
* Disable link-time optimization for matplotlib when using Clang.

* Remove duplicated line.

* Disable LTO only for versions >= 3.3.0.
2021-05-07 23:56:28 +00:00
lukebroskop
c175d24c0e
Add conflict for the CCE compiler (#23502)
Add conflict for the CCE compiler
2021-05-07 19:24:35 +00:00
Tom Payerle
5a7c339b0c
geos: Fix config issues with python bindings using python3 (#23479) (#23480)
* geos: Fix config issues with python bindings using python3 (#23479)

This should fix some config issues when building geos with python
bindings and using python3 --- the geos configuration scripts had
a few python2-isms.

I only tested (lightly; geos built and I can import geos in python3)
on 3.8.1, but I did check that the patch can at least be applied
in 3.5.

I belatedly discovered that geos dropped all the SWIG bindings
in @3.9, so I also added some conflicts on the +python and +ruby
options to note that they are not supported in 3.9.

* geos: adding omitted patch file
2021-05-07 12:27:29 -05:00
Scott Wittenburg
91de23ce65 install cmd: --no-add in an env installs w/out concretize and add
In an active concretize environment, support installing one or more
cli specs only if they are already present in the environment.  The
`--no-add` option is the default for root specs, but optional for
dependency specs.  I.e. if you `spack install <depspec>` in an
environment, the dependency-only spec `depspec` will be added as a
root of the environment before being installed.  In addition,
`spack install --no-add <spec>` fails if it does not find an
unambiguous match for `spec`.
2021-05-07 10:07:53 -07:00
Peter Josef Scheibel
a3d58129ec return concrete spec (as is advertised in the docstring) 2021-05-07 10:07:53 -07:00
Peter Josef Scheibel
320eb4872d fix check when retrieving matching spec from environment when there is a match with a root spec as well as with a dependency of a root spec 2021-05-07 10:07:53 -07:00
Claire Guilbaud
d82a0c6799
Update py-hieroglyph (#23279) 2021-05-07 09:12:30 -05:00
Sergey Kosukhin
7c6f65d36b
fdb: new package with deps (#23175) 2021-05-07 15:02:57 +02:00
Tiziano Müller
ccf9a11ff9
compilers: aocc is now also available as a Cray PrgEnv (#23289) 2021-05-07 14:55:32 +02:00
Adam J. Stewart
07ed432f27
GDAL: add v3.3.0 (#23426) 2021-05-07 14:54:12 +02:00
Harmen Stoppels
129de9083a
Show useful error in build-env (#23458)
Instead of an out of bounds error tell the user to provide a spec
2021-05-07 14:53:08 +02:00
Mark W. Krentel
1698be3c3c
libmonitor: add v2021.04.27 (#23460) 2021-05-07 14:37:20 +02:00
Robert Mijakovic
72f979a92b
at-spi2-core: add v2.40.1 (#23467)
Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
2021-05-07 14:32:39 +02:00
Robert Mijakovic
d9c149bb1a
at-spi2-atk: add v2.38.0 (#23468)
Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
2021-05-07 14:32:00 +02:00
Andrei Poenaru
8d016b87d2
gdbm: patch when using arm@21.0: (#23492) 2021-05-07 12:20:04 +00:00
Greg Sjaardema
b6b0fade46
CGNS:add v4.2.0, v4.1.2 and remove conflicting variant (#23481)
Added the checksum for 4.1.2 and 4.2.0

The `parallel` variant  did the exact same behavior as the `mpi` variant, but they had different default values than each other.  Both variants set the value of `-DCGNS_ENABLE_PARALLEL`, so it was unclear which variant was "winning" and could definitely result in a non-intuitive build.   Did a grep of the spack packages and none of them where using the `parallel` variant to control the cgns options.  Retained the `mpi` variant as that one is being used by multiple packages.

One issue that remains to be solved is that the default integer size has changed from 32-bit to 64-bit for the 4.2.0 release.  This is controlled by the `int64` variant which currently defaults to `OFF`.  There should maybe be some thought about changing the default to match the default of the current release, or maybe having a version-specific default...  For now, left the behavior as it has been for previous versions.
2021-05-07 14:14:56 +02:00
Howard Pritchard
4fb31be45d
OpenMPI: dont apply atomic patch for 4.1.1 and later (#23483)
The patch available in spack does not patch
cleanly for the 4.1.1 and presumably later releases.

See Open MPI commit b8a8096a3f153380f95af8f285f48e926eb18bf1

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2021-05-07 14:12:46 +02:00
Olivier Cessenat
588bdb1ef9
adms: new package (#23466) 2021-05-07 13:42:55 +02:00
Steven Smith
c131f13006
silo: add "hzip" and "fzip" variants (#23447)
SILO has optional support for compression libraries that require 
C++ (hzip and fpzip). This patch exposes those options as variants
to enable configuration of SILO without the C++ libraries for C 
applications. hzip and fpzip are enabled by default to preserve 
current behavior.
2021-05-07 13:40:04 +02:00
Gilles Gouaillardet
474ec196e6
gromacs: add v2021.2 (#23487) 2021-05-07 13:30:06 +02:00
Massimiliano Culpo
4402f89e39
ASP-based solver: minimize mismatch of targets (#23462)
Like compilers targets now try to minimize
mismatches, instead of maximizing matches.

Deduction of mismatches is reworked to be
the opposite of a match, since computing
that is faster.
2021-05-06 12:39:30 -07:00
Massimiliano Culpo
f83ec4d46f
ASP-based solver: no intermediate package for concretizing together (#23307)
The ASP-based solver can natively manage cases where more than one root spec is given, and is able to concretize all the roots together (ensuring one spec per package at most).

Modifications:
- [x] When concretising together an environment the ASP-based solver calls directly its `solve` method rather than constructing a temporary fake root package.
2021-05-06 10:19:10 -07:00
Robert Mijakovic
2ba493cd63
py-keras: new version (#22711)
* py-keras: new version

* Adds missing dependencies.

* Removes the newline which is against formatting rules.

* py-keras: limits some dependencies to older versions

* py-keras: restricts dependencies

* pykeras: fixes dependency ranges :)

Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
2021-05-06 11:35:28 -05:00
Sebastian Schmitt
be092e8625
py-brian2: Fix missing open range for python dependency (#23469) 2021-05-06 11:32:59 -05:00
Massimiliano Culpo
0fe3c5a07d
amp: cleanup of the recipe (#23079) 2021-05-06 09:10:13 -06:00
Harmen Stoppels
e5d87b711d
Reduce visual noise during distributed build (#23338) 2021-05-06 07:30:02 -07:00
Massimiliano Culpo
dfcd01f2c7
Delete spurious binary x.tgz (#23465) 2021-05-06 10:11:20 +00:00
Massimiliano Culpo
3761d9b3b9
mlperf-deepcam: fixed issue with cuda variant and deps (#23087) 2021-05-06 12:10:18 +02:00
Massimiliano Culpo
219eb09e59
Put a module object in sys.modules before executing module code (#23269)
The loading protocol mandates that the the module we are going
to import needs to be already in sys.modules before its code is
executed, so to prevent unbounded recursions and multiple loading.

Loading a module from file exits early if the module is already
in sys.modules
2021-05-06 11:53:40 +02:00
Dr. Christian Tacke
8f1b701660
boost: Switch download URL (#23422)
boost has moved its downloads from a bintray URL to a jfrog URL.

See: https://www.boost.org/users/news/boost_has_moved_downloads_to_jfr.html
2021-05-06 10:55:06 +02:00
Valentin Volkl
1127c9806f
arrow: zstd+pic variant does not exist anymore (#23463) 2021-05-06 08:40:39 +00:00
Kai Torben Ohlhus
71c1d4c1f5
openblas: add version 0.3.15 (#23461) 2021-05-06 10:11:36 +02:00
Sreenivasa Murthy Kolam
946dc7b16a
Enable cmake option -optimal for rocsolver (#23448) 2021-05-06 08:42:37 +02:00
Daniel Arndt
f9860de2d5
Update Kokkos for release 3.4.00 and add SYCL (#23433)
* Update Kokkos for release 3.4.00 and add SYCL

* add conflict if sycl was requested before 3.4
2021-05-05 14:13:16 -07:00
Robert Cohn
ab018c2081
intel-oneapi packages: support root installs (#23401)
When installing OneAPI packages as root (e.g. in a container), the
installer places cache files in /var/intel/installercache that
interfere with future Spack installs. This ensures that when
running an installation as a root user that this is removed.
2021-05-05 14:00:34 -07:00
Olivier Cessenat
d51deb4961
New version scorep 7.0 based on opari2-2.0.6 and otf2-2.3 +cube{w,lib}-4.6 (#23418) 2021-05-05 13:54:40 -07:00
Cyrus Harrison
a43939cafa
conduit: change default ver to tagged release (#23451) 2021-05-05 13:52:44 -07:00
Jon Rood
9a3513b3ec
Add parallel-netcdf version 1.12.2. (#23452) 2021-05-05 11:15:24 -07:00
Sebastian Schmitt
36a3bc465b
Update Brian to 2.4.2 (#23442) 2021-05-05 11:44:13 -05:00
G-Ragghianti
a45cb952b7
Packages: BLAS++ and LAPACK++ (#23372)
* Adding hip support

* Added new blaspp version and rocm support.  Fixed error in mesa18 package.

* Correcting variant name.

* Code style fixes

* Change of name of library

* Change "make check" to correctly run from the build directory.

* Upgraded version to fix testing errors

* Fixed testing directory

* Removed unnecessary variant entry (already inherited from CudaPackage)

* Generalization of version matching logic

* Code style

* Corrected version requirement
2021-05-05 08:16:15 -07:00
Hadrien G
4f7bd11d61
acts: add v8.00.0 and v8.01.0 (#23438) 2021-05-05 13:09:53 +02:00
Ryan Mast
a96ef8baa0
helics: add v2.7.0 (#23437)
Adds v2.7.0 to the HELICS package versions.
2021-05-05 13:09:20 +02:00
Harmen Stoppels
43c74f2f17
Bump cmake (#23434) 2021-05-04 23:01:25 -07:00
Jen Herting
4b93323d82
New package: r-assertive-sets (#23427)
Co-authored-by: Alex Leute <acl2809@rit.edu>
Co-authored-by: Alex C Leute <aclrc@rit.edu>
2021-05-04 20:27:25 -05:00
Andrew W Elble
901f7c14fb
py-tensorflow: continue to constrain h5py version (#23420)
cleanup from #23386
2021-05-04 12:52:27 -05:00
Jen Herting
16b720effb
New package: py-pytorch-lightning (#23353)
* lightning with friends

* fixed style errors in lightning

* [py-pytorch-lightning] fixed homepage

* [py-pytorch-lightning] removed release canidate version

* [py-pytorch-lightning] fixing some dependency listing issues

* [py-pytorch-lightning] removed py-pydepreciate

* [py-pytorch-lightning] more dependency cleanup

Co-authored-by: Sid Pendelberry <sid@rit.edu>
2021-05-04 12:51:07 -05:00