Commit graph

17329 commits

Author SHA1 Message Date
Adam J. Stewart
ef37852bb4
py-ipython: added v7.18.1 (#18631) 2020-09-15 08:26:27 +02:00
Adam J. Stewart
40a66317e8
py-jupyter-client: added v6.1.7, moved url to PyPI (#18632) 2020-09-15 08:25:39 +02:00
Adam J. Stewart
792c48a558
py-jupyter-core: updated the type of the setuptools dependency (#18633) 2020-09-15 07:42:28 +02:00
Adam J. Stewart
0448ade7b5
py-jupyterlab-server: added v1.2.0 (#18634) 2020-09-15 07:39:30 +02:00
Adam J. Stewart
defde398c4
py-argon2-cffi: added new package at v20.1.0 (#18626) 2020-09-15 07:38:16 +02:00
Adam J. Stewart
77d20906c0
py-jupyterlab: added v2.2.7 (#18635) 2020-09-15 07:20:15 +02:00
Adam J. Stewart
682223f1f4
py-nbformat: add v5.0.7, moved url to PyPI (#18637) 2020-09-15 07:18:12 +02:00
Adam J. Stewart
60a5a176fb
py-terminado: added v0.8.3 (#18639) 2020-09-15 07:15:38 +02:00
Adam J. Stewart
c59836222e
py-traitlets: added v5.0.4, moved url to PyPI (#18640) 2020-09-15 07:15:00 +02:00
Robert Pavel
4fc2370559
Added Missing Tag to Cradl Spackage (#18669)
Added missing proxy apps tag to cradl spackage
2020-09-14 18:55:53 -06:00
Robert Pavel
a2673aeddd
CRADL Machine Learning Proxy Spackage (#18668)
* Initial CRADL Spackage Work

Currently resolving ```--single-version-externally-managed``` error

* Fixed GPUtil Issues

Thanks to Vinay Ramakrishnaiah for overwriting install

* Finished CRADL Install Function

Finished CRADL install function which is basically copying the scripts
to the install directory. Also resolved flake8 issues for PR purposes
2020-09-14 14:25:49 -06:00
Simon Frasch
49512e21ab
SIRIUS: Update dependencies (#18622)
* sirius: Fixed dependency spfft when build with +rocm

* sirius: Added new dependency spla for develop build

* sirius: Added maintainer
2020-09-14 12:23:32 -05:00
Scott Wittenburg
f537d5bb58 Make sure each develop pipeline tests associated commit 2020-09-14 10:37:42 -06:00
Scott Wittenburg
28ef5b1204 Do not assume we sit in the directory where the env file lives. 2020-09-14 10:37:42 -06:00
Scott Wittenburg
031490f6aa Remove :<name> interpolation, add SPACK_VERSION variables
Also fix issues with documentation to reflect changes
2020-09-14 10:37:42 -06:00
Scott Wittenburg
bf90cdd6c7 Document pipeline keys which can be global but overridden
Update pipelines documentation to describe how 'tags', 'variables',
'image', 'before_script', 'script', and 'after_script' can be
supplied at the top level, to be used by any of the runner mappings,
and also overridden by any of the runner mappings.

Also show an example of capturing the custom spack SHA at pipeline
generation time, so all jobs are sure to run with the same version
of spack, as a means to illustrate the $env:VARIABLE_NAME syntax.
2020-09-14 10:37:42 -06:00
Scott Wittenburg
d9e0718c9d Allow overridable global runner attributes 2020-09-14 10:37:42 -06:00
Scott Wittenburg
e686f1500e Update pipeline documentation to describe user-provided scripts 2020-09-14 10:37:42 -06:00
Scott Wittenburg
e18612a321 Add test for variable interpolation and scripts 2020-09-14 10:37:42 -06:00
Scott Wittenburg
2386f7582a Support variable interpolation at pipeline generation time 2020-09-14 10:37:42 -06:00
Scott Wittenburg
ace52bd476 Provide your own script, before_script, and after_script 2020-09-14 10:37:42 -06:00
Massimiliano Culpo
4ca7d46e15
Fix a typo in test/concretize.pyi (#18662) 2020-09-14 09:58:14 -05:00
darmac
5f47170492
Add new package: webbench (#18650)
* Add new package: webbench

* Update var/spack/repos/builtin/packages/webbench/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-14 09:57:40 -05:00
ketsubouchi
41b68741ec
cpio: add --rtlib=compiler-rt for %fj (#18619)
* cpio: add --rtlib=compiler-rt for %fj

* cpio: simplify if

* Update var/spack/repos/builtin/packages/cpio/package.py

This seems better.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-14 09:55:47 -05:00
t-nojiri
a250006449
ngmlr: support for aarch64 (#18621)
* ngmlr: support for aarch64

* ngmlr: Fixed patch file
2020-09-13 23:14:59 -05:00
ketsubouchi
3cfce42563
nek5000: Support Fujitsu fortran (#18659) 2020-09-13 23:14:04 -05:00
Paul
c29b74e7ad
Updated FZF package for newer versions. (#18608)
* Support for external find.
* Added latest version (0.22.0) and conditions to package to continue
support for older versions.
2020-09-13 11:27:56 -05:00
Joseph Wang
58f101de88
use github for download (#18657) 2020-09-13 10:23:46 -05:00
Andrew W Elble
a734dabf2b
new package: py-reproject (#18641)
* new package: py-reproject
add setuptools build/run dep to py-astropy-healpix

* fixes

* fix
2020-09-12 15:37:34 -05:00
darmac
85f7a8bf71
Add new package: delta (#18648) 2020-09-12 15:37:14 -05:00
darmac
10dab474ce
cvs: add a patch for segv issue (#18649) 2020-09-12 09:47:39 -05:00
darmac
e355fc16ad
Add new package: dbxtool (#18651) 2020-09-12 09:45:05 -05:00
darmac
3211ac5136
Add new package: geoip-api-c (#18653) 2020-09-12 09:44:28 -05:00
darmac
cde4654525
Add new package: libspiro (#18654) 2020-09-12 09:44:02 -05:00
darmac
6d39e6ebea
Add new package: hping (#18311)
* Add new package: hping

* Update var/spack/repos/builtin/packages/hping/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/hping/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

Fix flake8 errors

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-12 09:36:30 -05:00
darmac
128731ec74
Add new package: jetty-project (#18555)
* Add new package: jetty-project

* refine dependency

* refine maven version
2020-09-12 09:35:38 -05:00
Richarda Butler
8116153f2a
bugfix: include configuration ignoring files with the same basename (#18487)
* Use the config path instead of the basename

* Removing unused variables

Co-authored-by: Greg Becker <becker33@llnl.gov>

* Test
Making sure if there are 2 include config files with the same basename they are both implemented

* Edit test assert

Co-authored-by: Greg Becker <becker33@llnl.gov>
2020-09-11 16:45:36 -07:00
Robert Blake
afb0883762
ncurses: adding external support. (#18609)
* ncurses: adding external support.

* Update var/spack/repos/builtin/packages/ncurses/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/ncurses/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/ncurses/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Fixing includes.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-11 16:00:11 -05:00
Massimiliano Culpo
8ad2cc2acf
Environments: Avoid inconsistent state on failed write (#18538)
Fixes #18441 

When writing an environment, there are cases where the lock file for
the environment may be removed. In this case there was a period 
between removing the lock file and writing the new manifest file
where an exception could leave the manifest in its old state (in
which case the lock and manifest would be out of sync).

This adds a context manager which is used to restore the prior lock
file state in cases where the manifest file cannot be written.
2020-09-11 10:57:29 -07:00
Adam J. Stewart
e7040467f2
NumPy: added v1.19.2 (#18615) 2020-09-11 15:38:24 +02:00
srekolam
1aceb38b89
Changes for hipsparse, rocthrust recipes for rocm_3.7.0 (#18497)
* changes for hipsparse,rocthrust recipes for rocm_3.7.0

* changes to rocrand for 3.7.0

* version changes
2020-09-10 17:33:21 -05:00
srekolam
4a474d9d67
recipes changes for hipblas, rocprim, rocfft, rocsolver for rocm3.7.0 (#18495)
* recipes changes for rocprim,rocfft,rocsolver for rocm3.7.0

* changes to hipcub recipe for rocm-3.7.0

* changes to address review comments
2020-09-10 17:32:41 -05:00
Robert Pavel
29645ceba5
Adding Missing Versions for Flux-Sched/Flux-Core and Compiler Flags (#18612)
* Checksummed New Flux Versions

Checksummed new flux versions to let spack detect them

* Added CXXFlags to build Flux-sched

Added missing cxxflags to build flux-sched
2020-09-10 16:53:28 -05:00
Robert Pavel
3fabdb6e9b
Adding Cuda Variant to SW4Lite (#18590)
* Adding Cuda Variant to SW4Lite

Added cuda variant of sw4lite  as per guidance in README

* Updated SW4Lite+cuda to Current Header Conventions

Updated sw4lite+cuda to use current conventions for spackage include
dirs

* Fixing FLake8 Issue with Sw4lite+cuda Fix

Fixed overly long line and further underlined sticky note reminding me
to run flake8 BEFORE pushing

* Switching to Spack Compiler Wrapper

Switching to spack compiler wrapper for consistency
2020-09-10 16:53:13 -05:00
Tim Haines
ff6ca57dda
Dyninst: add v10.2.1 (#18611) 2020-09-10 16:09:06 -05:00
Rémi Lacroix
114317464b
Orca: update the package. (#18593)
* Orca: Add new versions.

* Orca: Support OpenMPI without the legacy wrappers.

By default, Spack builds OpenMPI without the legacy wrappers when using the Slurm scheduler. This breaks Orca since its binaries are hardcoded to call "mpirun". To workaround this issue, add a "mpirun" wrapper which calls "srun" when required.
2020-09-10 11:55:13 -05:00
Johannes Blaschke
757dad370f
Bugfix for fish support: overly zealous arg matching (#18528)
* bugfix for issue 18369

* fix typo

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-10 10:01:44 -05:00
Tiziano Müller
2bc9821c43
update CP2K pkg for 8+ (#18607)
* cp2k: do not support ~openmp for v8+

* sirius: version bump

* cp2k: fix overlapping deps for elpa

fixes #18029

* cp2k: update SIRIUS dependency for v8+

* spfft: requires CMake 3.11+

* cp2k: fix build with +sirius
2020-09-10 10:00:31 -05:00
Toyohisa Kameyama
34f4049815
dpdk: Avoid option conflicts between spack wrappers and Makefiles on aarch64 gcc. (#18603) 2020-09-10 09:59:18 -05:00
t-nojiri
e13e2b0d54
prism: support for aarch64 (#18562)
* prism: support for aarch64

* prism: Change patch file.
2020-09-10 09:56:19 -05:00