Openblas target is now determined automatically upon inspection of
`TargetList.txt`. If the spack target is a generic architecture family
(like x86_64 or aarch64) the DYNAMIC_ARCH setting is used
instead of targeting a specific microarchitecture.
* Try to switch to a newer fork of ftgl
* Allow ROOT to be more flexible about ftgl versions
* Turn ftgl into a CMakePackage
* Update ROOT ftgl dep since 2.1.3 isn't a thing anymore
* Please flake8
* Try to bring back the doc variant
* Comment it out instead of removing it
* Fix root+x breakage from #11129
* Separate out +opengl breakage
* Not strictly X11-related, but more breakage from #11129
* Another X11 breakage found while building 6.08.x
* Don't put system headers in SPACK_INCLUDE_DIRS + deduplicate
* xextproto is only a dependency in +x builds
Rework Spack's continuous integration workflow to be environment-based.
- Add the `spack ci` command, which replaces the many scripts in `bin/`
- `spack ci` decouples the CI workflow from the spack instance:
- CI is defined in a spack environment
- environment is in its own (single) git repository, separate from Spack
- spack instance used to run the pipeline is up to the user
- A new `gitlab-ci` section in environments allows users to configure how
specs in the environment should be mapped to runners
- Compilers can be bootstrapped in the new pipeline workflow
- Add extensive documentation on pipelines (see `pipelines.rst` for further details)
- Add extensive tests for pipeline code
* Update and fix samtools
This PR adds samtools-1.10 and sets the htlib directory so that the
spack built htslib can be used. This PR also arranges the dependencies
so that the htslib sequence is grouped on its own. Finally, the bzip2
dependency is removed and python and perl run dependencies are added.
* Fix samtools when built with ncurses+termlib
* The CI flake8 tests require lowercase variable
Interestingly, this did not show up when I ran `spack flake8` locally.
Unfortunately UCX 1.7.0 is appearing in RPMS before it's officially released.
There's a problem with Open MPI 4.0.x where x < 3 and this version of UCX,
namely that the UCT BTL fails to compile.
See https://github.com/open-mpi/ompi/issues/7128
This patch works around the problem by disabling the build of the UCT BTL
for releases 4.0.0 to 4.0.2.
add hppritcha (me) as maintainer
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
* Add +cfitsio variant to wcslib dependency
* Replace ncurses dependency with readline dependency
casacore explicitly may depend on readline, not ncurses
* Add workaround for casacore's readline dependency
casacore optionally depends upon readline, but it's CMakeLists.txt provides no
user control over whether or not readline becomes a dependency. As readline is
often present by default on systems, it's better for this package to explicitly
depend on readline in order to prevent linking to whatever system version of the
library happens to be found during the build process. This should be considered
a workaround until casacore's CMakeLists.txt is fixed.
* Apply workaround for casacore's dependency on SOFA
Similar to the issues with casacore's readline dependency, casacore's optional
dependency on SOFA does not provide the user with a means of controlling the
dependency during build time. Unlike the readline library, the SOFA library is
unlikely to exist on most systems by default. As the SOFA dependency is only
optionally used for testing casacore, requiring it by default is not a good
workaround. Until casacore's CMakeLists.txt is fixed, this variant has been
removed to avoid unexpected library dependencies in the installed package.
* Add newer casacore versions
* Add mpokorny to maintainer field
- The suite-sparse author publishes new versions starting with 5.5.0 on GitHub, see https://github.com/DrTimothyAldenDavis/SuiteSparse/releases and http://faculty.cse.tamu.edu/davis/SuiteSparse/
- change spack to download from there
- updated sha256 checksums from GitHub for all available releases
- For versions 5.4.0, 5.5.0, 5.6.0 there is a slightly different compilation necessary: first `make default` then `make install`.
Summary of the version changes (+ added, -removed [because not available on GitHub]):
```
+ 5.6.0
+ 5.5.0
+ 5.4.0
5.3.0
5.2.0
+ 5.1.2
5.1.0
+ 5.0.0
+ 4.5.6
4.5.5
- 4.5.4
4.5.3
- 4.5.1
```
to disabled use of libunwind. Without this mesa fails to build
using recent Cray compilers - cce 9 and higher - on aarch64 systems.
Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
It seems that stable versions of perl also install a `perlX.Y.Z` binary.
However, it seems that this binary can hang if used in conjunction with
Spack's sbang workaround, as observed during automake's build.
* Update py-csvkit
This PR updates the py-csvkit package. This version requires a python
stack based on agate and this PR includes the new dependency packages.
- py-agate-dbf
- py-agate-excel
- py-agate-sql
- py-agate
- py-dbfread
- py-isodate
- py-leather
- py-parsedatetime
- py-python-slugify
- py-pytimeparse
- py-text-unidecode
* Replace the copy/pasted apostrophes
Python 2 can not process the copy/pasted apostrophes so replace them
with standard single quote character.
* Add version constraints on dependencies
