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Author SHA1 Message Date
Chris Green
a4bf8de09b gl2ps: add missing dependencies and doc variant. (#10886) 
Makes building of documentation optional.
 2019-03-25 20:04:33 -05:00
Dustin Lagoy
4c68d2e14e py-netcdf4: avoid using system installs of dependencies (#10885) 
Use environment variables to point setup.py to Spack installations
of hdf5/netcdf
 2019-03-25 20:03:02 -05:00
Chris Green
c124b1f471 postgresql package: build enhancements. (#10877) 
We add new variants to handle readline vs libedit, a client-only
build and install, and bindings to TCL, Python and Perl. We also add
new versions and the ability to detect remote versions not otherwise
dealt with.
 2019-03-25 19:51:51 -05:00
simo-tuomisto
6478a32598 New package: elmer-fem (#10860) 
Elmer finite element method solver; builds Elmer, ElmerICE and
contributed solvers with MPI support.
 2019-03-25 19:47:15 -05:00
Omar Padron
bf03edb51b LLVM package: disable CUDA (#10858) 
This avoids using a system-installed CUDA package. In the future a
variant can be added to allow using Spack-installed CUDA, but for
now CUDA support is always disabled.
 2019-03-25 19:43:18 -05:00
Brian Van Essen
a88b540723 Conduit package: add option to build with hdf5 versions > 1.8 (#10913) 
Added a variant to allow conduit to build with newer versions of
HDF5.  Set the default for the variant to prefer compatibility mode
with HDF5 v1.8
 2019-03-25 12:26:30 -05:00
Satish Balay
365c17a3d5
xsdk: enable sundials@4.1.0 for xsdk@develop (#10989) 
- disable sundials varaiant for dealii and mfem - as they are incomatible with sundials@4.1.0
 2019-03-24 22:17:20 -05:00
Satish Balay
8c165494f2
hypre: add superlu-dist variant (#10985) 
- add a patch to fix build error with superlu-dist
 2019-03-24 22:16:47 -05:00
Satish Balay
d7e984bcf8
amrex: current @develop - and future releases require cmake@3.13 or higher (#10953) 2019-03-24 22:15:49 -05:00
Navdeep Rana
fb946e51a4 Added a package for chapel. (#11002) 
* Added a package for chapel.

* flake8 compliance.
 2019-03-24 17:18:19 -05:00
Xavier Delaruelle
95a0e9c693 environment-modules: add version 4.2.3 (#11003) 2019-03-24 17:17:50 -05:00
Denis Davydov
64acce557d petsc: workaround xcode stub-out-of-sync issue (#10999) 2019-03-24 10:38:40 -05:00
Daryl W. Grunau
7081dba9ee Packages/zoltan (#10432) 
* serialize the F90 interface build

* serialize the F90 interface build
 2019-03-23 13:38:29 +01:00
Stephen McDowell
878b122f45 add ninja v1.9.0 (#10994) 2019-03-22 10:05:14 -05:00
Eric Martin
ec45c22808 netgen: update broken URL (#10882) 
* netgen: update broken URL

* netgen: fix url_for_version URL
 2019-03-22 10:01:07 -05:00
Michael Kuhn
b6185d4ad7 openfoam-com: Fix flex dependency (#10956) 
openfoam-com needs flex's FlexLexer.h, which can only be found if flex
is also a link dependency.
 2019-03-22 12:46:53 +01:00
Eric Martin
ba5f37ee26 vdt: Add version 0.4.3 (#10982) 2019-03-22 11:57:30 +01:00
Michael Kuhn
ea227b9974 py-hpccm: New package (#10957) 2019-03-22 11:39:10 +01:00
Eric Martin
1599dce2ae canu: Add versions 1.8 and 1.7 (#10978) 2019-03-22 11:27:36 +01:00
Eric Martin
563e573b13 megahit: Add version 1.1.4 (#10979) 2019-03-22 11:19:28 +01:00
Eric Martin
d9eaad80c3 racon: Add versions 1.3.2 and 1.3.1 (#10980) 2019-03-22 11:19:13 +01:00
Eric Martin
487fa5713c trimgalore: Add versions 0.6.0 and 0.6.1 (#10981) 2019-03-22 11:18:45 +01:00
Eric Martin
46e0ad3269 bowtie: Add missing zlib dependency (#10984) 2019-03-22 11:17:16 +01:00
Matthias Diener
133d4ca9ce gdb: add version 8.2.1 (#10988) 2019-03-22 11:00:28 +01:00
Hadrien G
cc8a086082 ACTS: add version 0.8.2 (#10974) 2019-03-22 10:59:45 +01:00
Denis Davydov
6d971c4493 add ginkgo package, use it in dealii along with symengine (#10917) 2019-03-22 10:58:48 +01:00
Shahzeb Siddiqui
724acb6421 typo in documentation (#10976) 2019-03-21 14:29:40 -05:00
Stephen McDowell
7bc899d9ca add eigen v3.3.7 (#10955) 2019-03-21 12:16:26 -05:00
George Hartzell
aa1e70aab1 Minor commentary correction, TCL -> lmod (#10951) 2019-03-21 11:17:41 +01:00
Stephen McDowell
70e436e932 prevent UnboundLocalError when sourcing files (#10950) 
Patch extracted from #7536 courtesy of @mgsternberg
 2019-03-21 11:08:29 +01:00
Patrick Schratz
bffe3a605f update R to v3.5.3 (#10928) 
* update R to v3.5.3
 2019-03-20 13:06:57 -05:00
Michael Kuhn
e02eb3633e mpich: Do not use libfabric@1.7: with ch3 ofi netmod (#10919) 2019-03-20 10:01:39 -07:00
Michael Kuhn
c66a24f22d pkgconf: add 1.6.0 (#10942) 2019-03-20 14:10:11 +01:00
bfovet
81f699eca3 Update GMSH to 4.2.2 with OpenMP variant (#10914) 2019-03-20 05:12:57 +01:00
Patrick Schratz
f51bce5636 saga-gis: new versions up to 7.3.0 (#10922) 2019-03-20 05:03:14 +01:00
Denis Davydov
de3ff1a96b gettext: fix dependency type of xz (#10935) 2019-03-20 04:57:08 +01:00
sknigh
e717230bf8 added yara (#10901) 2019-03-20 04:55:02 +01:00
fcannini
9a8c4cf071 gromacs: make sure cuda support is disabled when cuda=False (#10936) 
* abinit: Fix building with hdf5/netcdf.

* gromacs: Fix attempt to build with cuda support when 'cuda=False'

If for some reason there's a cuda toolkit installed by other means,
(i.e. not by spack) cmake will still try to build with cuda support,
even though 'cuda=False' is the default of the spec.

* Revert "abinit: Fix building with hdf5/netcdf."

This reverts commit e16f725e37b91193fe519b1821446c76ab551928.

This should not be here.
 2019-03-20 04:54:03 +01:00
Michael Kuhn
1db5a3e0a3 libfabric: add 1.6.2 (#10918) 2019-03-20 04:52:50 +01:00
Matthias Diener
d935048982 git: add version 2.21.0 (#10937) 2019-03-20 04:49:47 +01:00
Michael Kuhn
b48a6f22be strace: add 5.0 (#10940) 2019-03-20 04:48:13 +01:00
Michael Kuhn
09d57d8cee libeatmydata: new package (#10941) 2019-03-20 04:47:45 +01:00
Chris Green
9ad02685d9 Fix help text for --no-checksum. (#10932) 2019-03-19 15:02:06 -05:00
Kelly (KT) Thompson
a1eeeadfd8 Branson: provide new versions. (#10926) 
* Branson: provide new versions.

+ Also update dependencies (newer version have fewer dependencies).

* fix style issue
 2019-03-19 08:49:58 -06:00
Kelly (KT) Thompson
29ce8eb892 Draco: add variants (#10925) 
* Draco: add variants

+ This package has many optional build dependencies that were not registered in
  older versions of this recipe.  I've added (and tested) this more complete
  list of optional dependencies: parmetis, superlu-dist, qt.

* fix style issues
 2019-03-19 08:49:30 -06:00
Owen Solberg
3618d405b1 added checksum for new bowtie2 version (#10930) 2019-03-19 15:14:25 +01:00
Christoph Junghans
a6ccd99054
cabana: cuda backend (#10660) 2019-03-18 14:02:28 -06:00
Massimiliano Culpo
4aead5e35b
redis: new package (#10915) 
Added versions from 4.0.11 to 5.0.3

closes #9180
 2019-03-16 14:47:11 +01:00
Mark W. Krentel
e811e23f2e hpcviewer: new package (#10878) 
* hpcviewer: new package

Add binary package for hpcviewer and hpctraceviewer for the Rice
hpctoolkit on Linux x86_64, ppc64 and ppc64le.

* ibm-java: add property 'home' so that spec['java'].home will work.

* Flake

* More flake.

* Test that the version, machine type pair exists before using it in the
sha dictionaries so that 'spack info' doesn't crash on unsupported
configurations.
 2019-03-15 15:47:22 -05:00
Chris Green
6de6d5396c New package: mariadb-c-client (#7729) 
* mariadb-c-client is a new package using the distinct, LGPL,
  MySQL-compatible client library from mariadb.com. It provides the
  virtual package mariadb-client
* mariadb is recorded as a provider of the mariadb-client virtual
* The mysql-client virtual package is also added, and mariadb-c-client
  is recorded as a provider for it
 2019-03-15 14:12:30 -05:00