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Author SHA1 Message Date
Harmen Stoppels
c882214273
spack bootstrap dev: detect git as an external (#39417) 
#36770 added git as a dependency to `setuptools-scm`. This in turn makes `git` a
transitive dependency for our bootstrapping process. 

Since `git` may take a long time to build, and is found on most systems, try to 
detect it as an external.
 2023-08-14 10:29:15 +00:00
Pariksheet Nanda
2bacab0402
arrow: fix conditional spec expression (#38212) (#38213) 2023-08-14 09:27:50 +02:00
Hao Lyu
0681d9a157
wrf: add v4.5.1 (#39291) 2023-08-14 09:20:56 +02:00
Audrius Kalpokas
887847610e
gromacs: add plumed 2.8.3-2.9.0 variants (#39411) 2023-08-14 09:17:16 +02:00
Pariksheet Nanda
282a01ef76
py-scikits-odes: add a new package (#39061) 2023-08-14 02:00:03 +00:00
Adam J. Stewart
151c551781
Python: fix Apple Clang +optimizations build (#39412) 2023-08-13 21:47:47 -04:00
Hariharan Devarajan
abbd1abc1a
release 0.0.1 py-dlio-profiler-py (#39377) 2023-08-13 12:20:58 -05:00
Wouter Deconinck
49c505cc14
py-pyliblzma: remove python2 package (#39399) 
Last release 13 years ago, before python 3.2 was released. No depedendents or next of kin could be located.
 2023-08-13 11:57:52 -05:00
Sergey Kosukhin
237a56a305
autotools: set 'ldlibs' as 'LIBS' (#17254) 2023-08-13 00:38:10 -07:00
Harmen Stoppels
7e7e6c2797
bazel: pretty print is all but pretty (#35963) 
* bazel: pretty print is all but pretty
* Don't ask bazel to explain what it's up to
 2023-08-12 20:43:09 -04:00
Alex Richert
e67c61aac0
Allow static-only openssl on Linux (#38098) 2023-08-12 20:42:53 +02:00
Scott Wittenburg
1b1ed1b1fa
ci: continue to support SPACK_SIGNING_KEY (#39170) 2023-08-12 08:52:46 -07:00
snehring
ec0e51316b
usalign: update checksum (#39400) 2023-08-12 08:40:44 -07:00
Vicente Bolea
533821e46f
adios2: add mgard variant (#39405) 2023-08-12 08:38:33 -07:00
Wouter Deconinck
6c5d125cb0
cernlib: new variant shared (#39406) 
This allows users to install cernlib with static libraries only, instead of both static and shared.
 2023-08-12 08:34:48 -07:00
Richard Berger
668fb1201f
lammps: new stable versions, deprecate older patch versions (#39317) 2023-08-12 09:57:38 +02:00
Adam J. Stewart
f7918fd8ab
Python: remove maintainer (#39384) 2023-08-12 09:08:25 +02:00
Axel Huebl
fc1996e0fa
WarpX 23.07 (#39108) 
* WarpX 23.07

Update WarpX and related Python packages to the lastest releases.

* py-picmistandard: refresh hashes

Keeping even a single `git` version in here confuses the fetcher.
Remove broken old versions.

* Remove `py-warpx` versions with broken PICMI
 2023-08-11 17:35:04 -07:00
eugeneswalker
ed3aaafd73
e4s cray sles ci: expand spec list (#39081) 
* e4s cray sles ci: expand spec list

* flux-core: disable until python+gary-sles issue is resolved
 2023-08-11 23:42:10 +00:00
Wouter Deconinck
63bb2c9bad
py-cryptography: does not run-depend on py-setuptools-rust (#39386) 
* py-cryptography: does not run-depend on py-setuptools-rust

* py-cryptography: depens_on py-setuptools-rust when @3.4.2:

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-cryptography: re-add depends_on type=run for narrow range

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2023-08-11 17:53:25 +00:00
Alex Richert
a67455707a
ncl: add support for grib (#39277) 
Co-authored-by: Alex Richert <alexander.richert@noaa.gov>
 2023-08-11 08:42:08 +00:00
Cristian Di Pietrantonio
09ca71dbe0
kokkos: rename 'std' variant to 'cxxstd'. (#39319) 
Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
 2023-08-11 07:18:02 +00:00
Todd Gamblin
ea082539e4
Revert "package import: remove magic import line (#39183)" (#39380) 
This reverts commit 8e7c53a8ba.
 2023-08-11 09:04:40 +02:00
Massimiliano Culpo
143146f4f3
spack.repo: uppercase the global PATH variable (#39372) 
This makes the name of the global variable representing
the repository currently in use uppercase. Doing so is advised
by pylint rules, and helps to identify where the global is used.
 2023-08-11 09:04:16 +02:00
Melven Roehrig-Zoellner
ee6ae402aa
qt: fedora patch missing includes in qtlocation (#38987) 2023-08-11 08:10:06 +02:00
Adam J. Stewart
0b26b26821
GDAL: fix supported versions of HDF5 (#39378) 2023-08-11 08:02:15 +02:00
dependabot[bot]
c764f9b1ab
build(deps): bump mypy from 1.4.1 to 1.5.0 in /lib/spack/docs (#39383) 
Bumps [mypy](https://github.com/python/mypy) from 1.4.1 to 1.5.0.
- [Commits](https://github.com/python/mypy/compare/v1.4.1...v1.5.0)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-08-11 08:01:34 +02:00
William R Tobin
db19d83ea7
essl: add +lapackforessl variant (#39362) 2023-08-11 08:01:02 +02:00
Gregor Daiß
24256be6d6
sgpp: fix build issues (#39086) 
* fix(sgpp): Fix installation phase scons args

* fix(sgpp): Workaround for distutils deprecation

The distutils deprecation warning in Python 3.10 - 3.11 caused
problems within the SGpp SConfigure checks by causing failures
when looking for Python.h. This commit works around this by adding a
patch that simply disables the warning. It also puts limits on the
python dependency version until distutils is removed from SGpp.

* fix(sgpp): cleanup and simplify

* fix(sgpp): Fix style
 2023-08-11 07:55:44 +02:00
Sergey Kosukhin
633723236e
mpich: fix building with NVHPC (#39082) 2023-08-11 07:29:16 +02:00
Yan
381f31e69e
py-flit: add 3.8 and 3.9 (#39307) 2023-08-10 20:23:58 -04:00
Massimiliano Culpo
9438cac219
Fix conflicts on direct dependencies that don't start with ^ (#39369) 2023-08-10 16:58:05 -04:00
Harmen Stoppels
85cf66f650
git: add new versions, deprecated / drop versions (#39368) 
Remove git versions deprecated in Spack 0.19
 2023-08-10 21:12:23 +02:00
markus-ferrell
f3c080e546
Windows build systems: use ninja and enable tests (#33589) 
* Set default CMake generator is ninja on Windows
* Enable build systems tests (except for autotools/make)
 2023-08-10 17:16:23 +00:00
dependabot[bot]
37634f8b08
build(deps): bump pygments from 2.15.1 to 2.16.1 in /lib/spack/docs (#39365) 
Bumps [pygments](https://github.com/pygments/pygments) from 2.15.1 to 2.16.1.
- [Release notes](https://github.com/pygments/pygments/releases)
- [Changelog](https://github.com/pygments/pygments/blob/master/CHANGES)
- [Commits](https://github.com/pygments/pygments/compare/2.15.1...2.16.1)

---
updated-dependencies:
- dependency-name: pygments
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-08-10 18:10:32 +02:00
ddeeptimahanti
2ae8bbce9e
trilinos: fix @13.2: +python (#39370) 2023-08-10 11:50:33 -04:00
William R Tobin
b8bfaf65bf
intel-oneapi-mkl: linking with the +cluster variant is broken for external mkl (#39343) 
* Update package.py

Adding `mpi` variant to deal with external oneapi-mkl usage per #38238.

* style conformance

* accept both mpi specification mechanisms

* style conformance

* Update package.py

* Update var/spack/repos/builtin/packages/intel-oneapi-mkl/package.py

Co-authored-by: Robert Cohn <rscohn2@gmail.com>

* rename mpi variant mpi_family

* style conformance

* update help message for mpi_family

---------

Co-authored-by: Robert Cohn <rscohn2@gmail.com>
 2023-08-10 10:33:29 -04:00
Alberto Invernizzi
7968cb7fa2
mpich: fix macos problem with -flat-namespace (#35611) 
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
 2023-08-10 08:34:33 -04:00
Nicholas Sly
ebc2efdfd2
Add LLVM_ENABLE_RTTI option to llvm-amdgpu package, required by mesa. (#35655) 2023-08-10 07:14:02 -04:00
Harmen Stoppels
ff07fd5ccb
Remove qt variant in cmake (#39360) 
`cmake+qt` depends on `qt`, which depends on `libmng`, which is a CMake
package, and has been for 4 years. Nobody ever complained about
`cmake+qt` not concretizing... so why pay the solve cost.


Before:

```
    setup          3.779s
    load           0.018s
    ground         2.625s
    solve          4.511s
    total         11.236s
```

After:

```
    setup          3.734s
    load           0.018s
    ground         0.468s
    solve          0.560s
    total          5.080s
```
 2023-08-10 05:59:22 -04:00
dependabot[bot]
3f83ef6566
build(deps): bump flake8 from 6.0.0 to 6.1.0 in /lib/spack/docs (#39366) 
Bumps [flake8](https://github.com/pycqa/flake8) from 6.0.0 to 6.1.0.
- [Commits](https://github.com/pycqa/flake8/compare/6.0.0...6.1.0)

---
updated-dependencies:
- dependency-name: flake8
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-08-10 05:34:33 -04:00
dependabot[bot]
554ce7f063
build(deps): bump sphinx-design from 0.4.1 to 0.5.0 in /lib/spack/docs (#39367) 
Bumps [sphinx-design](https://github.com/executablebooks/sphinx-design) from 0.4.1 to 0.5.0.
- [Release notes](https://github.com/executablebooks/sphinx-design/releases)
- [Changelog](https://github.com/executablebooks/sphinx-design/blob/main/CHANGELOG.md)
- [Commits](https://github.com/executablebooks/sphinx-design/compare/v0.4.1...v0.5.0)

---
updated-dependencies:
- dependency-name: sphinx-design
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-08-10 05:29:52 -04:00
Aiden Grossman
23963779f4
Prefix conflict messages with package name (#39106) 
* Prefix conflict messages with package name

This patch prefixes all conflict messages with the package name to
alleviate what was otherwise a very manual process. Note that this patch
is a one line change but has a fairly outsized impact.

* same for requires directive

---------

Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
 2023-08-10 08:09:00 +00:00
Ricard Zarco Badia
45c5af10c3
Fixed broken calls to _if_ninja_target_execute (#38992) 
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
 2023-08-10 09:34:02 +02:00
Harmen Stoppels
532a37e7ba
Revert "Spec versions: allow git. references for branches with / (#38239)" (#39354) 
This reverts commit 3453259c98.
 2023-08-10 08:56:39 +02:00
Cristian Di Pietrantonio
aeb9a92845
ncview: change URL for source code (#39321) 
Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
 2023-08-10 08:38:58 +02:00
dependabot[bot]
a3c7ad7669
build(deps): bump urllib3 from 2.0.3 to 2.0.4 in /lib/spack/docs (#39002) 
Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.0.3 to 2.0.4.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](https://github.com/urllib3/urllib3/compare/2.0.3...2.0.4)

---
updated-dependencies:
- dependency-name: urllib3
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-08-10 05:04:58 +00:00
Juan Miguel Carceller
b99288dcae
edm4hep: add edm4hep to PYTHONPATH (#38407) 
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
 2023-08-09 18:22:17 -05:00
markus-ferrell
01b7cc5106
Windows: enable more stage tests (#36834) 
Enable some already-supported tests (no changes to staging logic).
 2023-08-09 14:24:30 -07:00
pabloaledo
f5888d8127
picard: add variant with jvm arguments (#39204) 
* picard: add variant with jvm arguments
* fix variant and update wrapper script

---------

Signed-off-by: Pablo <pablo.aledo@seqera.io>
 2023-08-09 13:24:34 -07:00