Commit graph

35421 commits

Author SHA1 Message Date
Alec Scott
662ab2d4c5
xz: add v5.4.6 & v5.4.5 (#42612) 2024-02-12 09:13:49 +01:00
Alec Scott
722b00bbfb
go: add v1.22.0 (#42611) 2024-02-12 09:12:31 +01:00
Alberto Invernizzi
6dbb56ba36
nvpl-lapack: fix versioning and add missing dependency (#42599)
* fix wrong versioning
use doc version and not the one extrapolated from the path (i.e. 0.2.0.1)

* nvpl-lapack requires nvpl-blas
propagate matching variants to nvpl-blas dependency

Co-authored-by: albestro <albestro@users.noreply.github.com>
2024-02-12 09:11:47 +01:00
Dave Keeshan
2e5bdd2679
yosys: add v0.38 (#42616) 2024-02-12 09:08:03 +01:00
Maciej Wójcik
97ec167452
py-immutables: fix building, add new versions (#42530)
* py-immutables: fix building, add new versions

* Explain constraint

* py-immutables: Wrap line
2024-02-11 16:07:54 -07:00
Garth N. Wells
2b8dcc0f57
fenicsx: deprecate older versions (#42613)
* Deprecate FEniCSx packages

* Format files

* Simplification
2024-02-11 15:57:39 -07:00
Maciej Wójcik
6312658888
py-configargparse: add new versions (#42533)
* py-configargparse: add new versions

* py-configargparse: Remove unnecessary constraint
2024-02-11 15:52:37 -07:00
Mikhail Titov
213818ffb5
Update package versions: RADICAL-Cybertools (RE, RG, RP, RS, RU) (#41997)
* rct: update packages (RE, RG, RP, RS, RU) with new versions

* rct: updated style

* rct: 1.46 release

* rct: RP 1.46.1 (hotfix applied)

* rct: deprecated old versions

* Update var/spack/repos/builtin/packages/py-radical-entk/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-radical-pilot/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-radical-saga/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* rct: brought back dependencies for deprecated versions

* rct: RP hotfix release 1.46.2

* rct: new stack release 1.47.0

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-02-11 15:09:20 -06:00
Alex Leute
aed5d1a88d
py-gpy: added +plotting variant (#42588)
Co-authored-by: Alex C Leute <aclrc@rit.edu>
2024-02-11 14:58:23 -06:00
Stephen Hudson
8b94128625
libEnsemble: add v1.2.0 (#42591) 2024-02-11 14:57:04 -06:00
Maciej Wójcik
4d91fbdf0f
py-versioneer-518: add a workaround (#42534) 2024-02-11 14:48:29 -06:00
George Young
d7aa9d38fa
py-deeptools: add 3.5.3 (#39951)
* py-deeptools: add 3.5.3

* switching tp pypi

* removing patch for tests

---------

Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2024-02-11 14:31:46 -06:00
Eric Berquist
b3369ac669
Add pre-commit 3.6.0 (#42404)
* Add pre-commit 3.6.0

* pre-commit 3.6.0 drops support for Python <3.9
2024-02-11 14:29:26 -06:00
George Young
e68fde6f4e
py-ucsf-pyem: updating to commit e92cd4d (#42428)
* py-ucsf-pyem: updating to commit e92cd4d

* py-pyfftw: updating to @0.13:1

* py-ucsf-pyem: correcting install of scripts

* Upper limits

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Upper limits

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* updates from github review

---------

Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-02-11 13:01:58 -06:00
Dani
f0e49a54c0
new builtin package: py-simpletraj (#42460)
* new builtin package: py-simpletraj

* long line splitted in two for the style test

* removed trailing whitespace for the style test
2024-02-11 12:56:31 -06:00
Robert Cohn
2c67571726
[oneapi]: make headers match oneapi vars.sh (#42614)
* [oneapi]: make headers match oneapi vars.sh

* update

* update
2024-02-11 08:23:53 -08:00
Maciej Wójcik
fae6d3780f
gromacs: add new version (#42609) 2024-02-10 08:19:12 -07:00
Howard Pritchard
34ba8e9527
openmpi: add 5.0.2 (#42568)
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2024-02-10 14:36:18 +01:00
Massimiliano Culpo
686d1bc1ea
mfem: fix self-referential dependencies (#42487) 2024-02-10 13:08:13 +01:00
snehring
9b42f9ab18
viennarna package: add v2.6.4 (#42606) 2024-02-10 02:38:03 -07:00
Alec Scott
1d508e1be3
fzf package: add v0.46.1 (#42603)
* fzf: add v0.46.1
* Standardize vim plugin install
2024-02-09 16:29:20 -08:00
Alec Scott
41f735a4ee
gh package: add v2.43.1 (#42604)
* gh: add v2.43.1
* gh: fix go dependency versions
2024-02-09 16:28:06 -08:00
James Taliaferro
e9e6eb613b
libsixel: add new package (#40031)
* add new package libsixel

* reorder to group variants and dependencies together

* Switch to using source from fork

The original developer of libsixel, Hayaki Saito (@saitoha), disappeared
in early 2020 and has not updated the repository or been seen since.
However, a fork of the project has been created at libsixel/libsixel,
and that fork has been getting much more regular updates. In this commit
I switch the package to using the better-maintained, now apparently
canonical fork of the project.

That project switched the build system from autotools to Meson, so much
of the build arguments code needed to be rewritten. The newest official
release also contained an error in meson.build which would break on
newer versions of Meson. That error only applied to the libjpeg and
libpng variants, though, so I switched the default to use libgd which
has broader format support anyway.

* blacken

* broke description into multiple lines

* allow libjpeg, etc to be loaded automatically
2024-02-09 12:09:10 -08:00
Chris Marsh
6dd19594ab
Resolve unzip build failure with %oneapi (#42593)
* apply patch to all compilers as per spack/issues/42007

* [@spackbot] updating style on behalf of Chrismarsh

* Resolve flake8 style issue from spackbot

* fix flake8 trailing whitespace

---------

Co-authored-by: Chrismarsh <Chrismarsh@users.noreply.github.com>
2024-02-09 12:04:05 -08:00
Harmen Stoppels
4f0a8fce52
hooks: remove 7 unused hooks (#42575)
These 7 hooks were not used.

- Six of them related to install phases were unused after `spack`
  `monitor` was removed, and the code seems to have bit rotten as there
  were reports they were not (always?) triggered when they should.
- The post environment one was made redundant after spack install for
  environment started following the common code path for generating
  module files in #42147.

It should not be a breaking change to remove, since users cannot define
hooks in extensions, they would have to fork Spack.

If we ever _were_ to make those hooks extendable outside of core Spack,
it would also be better to start with fewer rather than more, cause
everything you expose gets relied upon...

Removing those also allows us to rethink what hooks we really need, and
in particular it seems like we need a hook that runs post install also when
the spec is inserted into the database.
2024-02-09 20:52:09 +01:00
Massimiliano Culpo
7ff3b17f14
ASP-based solver: fix issue with conditional requirements and trigger conditions (#42566)
The lack of a rule to avoid enforcing requirements on multi-valued variants, when the condition activating the environment was not met, resulted in multiple optimal solutions. The fix is to prevent imposing a requirement if the when= rule activating it is not met.
2024-02-09 20:50:04 +01:00
Samuel Li
f71669175f
sperr: add v0.8.1 (#42506) 2024-02-09 18:27:27 +01:00
simonLeary42
27b72b7691
Allow + in module file names (#41999) 2024-02-09 15:50:05 +01:00
Massimiliano Culpo
c5e0270ef0
dd4hep: remove self-referential dependencies (#42483)
This shouldn't be an issue, but express the self-reference
with a conflict.
2024-02-09 15:13:00 +01:00
Harmen Stoppels
c59d2d5b1c
docs: overhaul module_file_support.rst (#42585)
The section was highly outdated as it referred to old defaults, and
failed to mention `hide_implicits: true`.

This commit restructures it, moves some deeply nested sections a level
up, and promotes `hide_implicits: true` + `autoload: direct` before
talking about `exclude`.
2024-02-09 13:32:43 +01:00
Paul R. C. Kent
a832d31ccd
llvm: add 17.0.5, 17.0.6 (#42571) 2024-02-09 11:29:12 +01:00
Veselin Dobrev
47a8bde4da
Add the latest OpenSSL versions: 3.2.1, 3.1.5, 3.0.13 (#42581) 2024-02-09 10:30:01 +01:00
kwryankrattiger
13050a9fb3
CI: Add ability to enable and disable stacks (#42255)
It is useful to enable/disable stacks in order to handle turning
specific stacks on/off based on runner availability, stack stability,
testing requirements, etc.

The disabled stack list takes precedence over the enable stack list. The
assumption is that stacks that are disabled are so due to some
functionality missing or broken for that stack.

The enable stack list implicitly disables all stacks not listed in the
enable list.
2024-02-08 15:26:32 -06:00
Massimiliano Culpo
753e8b53d3
xyce: fix self-referential dependencies (#42557) 2024-02-08 21:04:58 +01:00
Robert Underwood
af49f81ec5
libice fix for older glibc (#42586) 2024-02-08 19:52:37 +01:00
Massimiliano Culpo
db1a7406ca
pastix: fix self-referential dependencies (#42546) 2024-02-08 16:27:01 +01:00
Adam J. Stewart
ecc9145d2c
spack help --spec: add @= notation (#42584) 2024-02-08 15:57:44 +01:00
Rocco Meli
7090983c67
cp2k: patch for compilation with RelWithDebInfo (#42563) 2024-02-08 15:42:43 +01:00
Sergey Kosukhin
09fdea959f
openmpi: add patch fixing MPI_MIN for unsigned long (#32392) 2024-02-08 15:41:46 +01:00
Massimiliano Culpo
e419e4ca93
q-e-sirius: fix self-referential dependencies (#42549) 2024-02-08 12:44:00 +01:00
Massimiliano Culpo
9e8f6e8d54
mpich: fix self-referential dependencies (#42527) 2024-02-08 09:34:54 +01:00
Massimiliano Culpo
753d69856a
suite-sparse: fix self-referential dependencies (#42556) 2024-02-08 09:34:26 +01:00
Massimiliano Culpo
6d28caefc7
grib-util: fix self-referential dependencies (#42558) 2024-02-08 09:33:38 +01:00
John W. Parent
7b9eac02ff
Windows registry: improve search efficiency & error reporting (#41720)
* Registry queries can fail due to simultaneous access from other
  processes. Wrap some of these accesses and retry when this may
  be the cause (the generated exceptions don't allow pinpointing
  this as the reason, but we add logic to identify cases which
  are definitely unrecoverable, and retry if it is not one of
  these).
* Add make recursion optioal for most registry search functions;
  disable recursive search in case where it was originally always
  recursive.
2024-02-07 13:26:07 -08:00
Massimiliano Culpo
138f8ba6e2
strumpack: fix self-referential dependencies (#42554) 2024-02-07 19:00:26 +01:00
Jonathon Anderson
046f9e89a1
hpctoolkit: Add dependency on xxhash for @develop (#42513) 2024-02-07 18:05:08 +01:00
Kevin Huck
2cca64d01d
apex: add new release, deprecate old options, remove boost (#42538) 2024-02-07 17:17:04 +01:00
Alberto Invernizzi
9aed13adb9
nvpl-blas and nvpl-lapack: new packages for NVidia performance libraries (#41775)
Co-authored-by: Raffaele Solcà <rasolca@cscs.ch>
2024-02-07 17:01:11 +01:00
Massimiliano Culpo
85b6c344bd
r: fix self-referential dependencies (#42551) 2024-02-07 16:55:28 +01:00
Massimiliano Culpo
9359c9b9db
plink2: fix self-referential dependencies (#42547) 2024-02-07 16:55:09 +01:00