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469 commits

Author SHA1 Message Date
Paul Dapolito
cd2a23384f Added v5.2.2 for xz library 2015-10-26 14:28:56 -07:00
Massimiliano Culpo
e812c35689 GCC : removed binutils variant 2015-10-23 10:11:38 +02:00
Todd Gamblin
f76b3890ff Merge pull request #137 from davidbeckingsale/features/ompi-wrappers 
Filter wrapper data to use correct compilers in OpenMPI
 2015-10-22 16:01:55 -04:00
David Beckingsale
9f496e5efa Replace compiler in f90 and f77 wrappers if they exist 2015-10-22 09:50:02 -07:00
David Beckingsale
41c01b523f Filter wrapper data to use correct compilers in OpenMPI 2015-10-22 09:13:20 -07:00
Todd Gamblin
cbcc6fc9f5 Merge branch 'khuck-develop' into develop, github PR #136 2015-10-22 08:27:23 -07:00
Kevin Huck
7cb557cba7 Adding dependency on ompt-openmp, now that it is a package. 2015-10-22 08:06:31 -07:00
Kevin Huck
caf93cc408 Adding package for OMPT support in the LLVM/Clang OpenMP runtime, 
which gives OMPT support for applications built with GCC, Intel or
LLVM/Clang.
 2015-10-22 08:03:50 -07:00
Massimiliano Culpo
e6a44bd8ac GCC : removed dependency on libelf. Removed isl variant 2015-10-22 15:55:43 +02:00
Massimiliano Culpo
f475ec4ce6 Merge branch 'develop' of https://github.com/scalability-llnl/spack into issues/gcc 
Conflicts:
	var/spack/packages/gcc/package.py

GCC : removed dependency on libelf. Removed isl variant
 2015-10-22 15:53:44 +02:00
Kevin Huck
24838a62b4 Changed date formatting. 2015-10-22 06:02:56 -07:00
Kevin Huck
2a61ff0794 Changing git checkout from "master" to commit 
d2e66ddde689120472fc57fc546d8cd80aab745c
 2015-10-22 03:57:33 -07:00
Kevin Huck
fb9eca4226 Added an APEX package, but it is still using the git master instead 
of a release.
 2015-10-21 19:35:31 -07:00
Kevin Huck
c082abfb65 Modified the binutils package to use --enable-shared. Required by tools that 
use binutils and get this error (or equivalent):
"relocation R_X86_64_32S against `bfd_errmsgs' can not be used when
making a shared object; recompile with -fPIC"
 2015-10-21 18:32:57 -07:00
Todd Gamblin
1f662465c2 Merge pull request #119 from mamelara/develop 
Added current version 3.2 of libffi version 3.1 has a bug
 2015-10-21 16:07:26 -04:00
Todd Gamblin
c8f01480d6 Merge pull request #128 from mathstuf/netcdf-new-linker-mpi 
netcdf: link to MPI
 2015-10-21 16:02:59 -04:00
Todd Gamblin
c388cbe8e4 Merge pull request #131 from jsquyres/pr/openmpi-update 
openmpi: update package versions of Open MPI
 2015-10-21 15:59:12 -04:00
Todd Gamblin
6773a2b3bf Merge pull request #132 from jsquyres/pr/mpich-mpi-version-fix 
mpich: add fine-grained MPI conformance versions
 2015-10-21 15:58:41 -04:00
Todd Gamblin
59dfb1c175 Merge pull request #134 from davidbeckingsale/features/ncdu 
Added ncdu package
 2015-10-21 15:58:02 -04:00
Todd Gamblin
345fd3b285 Merge pull request #133 from epfl-scitas/packages/trilinos 
Packages/trilinos
 2015-10-21 15:54:13 -04:00
Kevin Huck
e0e79a2cb3 Adding package for activeharmony. 2015-10-21 11:56:01 -07:00
David Beckingsale
7e2f3cff44 Added ncdu package 2015-10-19 15:41:46 -07:00
Massimiliano Culpo
ec5560374c glm : added basic configuration for the package 2015-10-19 13:56:08 +02:00
Massimiliano Culpo
aab7102b9b matio : added basic configuration for the package 2015-10-19 13:55:44 +02:00
Massimiliano Culpo
3a4bdf1856 trilinos : first version that compiles on bellatrix 2015-10-19 13:48:46 +02:00
Massimiliano Culpo
ff0d039a1f trilinos : prototype for the whole package 2015-10-19 13:48:38 +02:00
Massimiliano Culpo
f4460894be hdf5 : updated version 
mpich : updated version
trilinos : created stub
 2015-10-19 13:48:24 +02:00
Todd Gamblin
44ba16a391 Add libiberty option to binutils 2015-10-17 17:04:34 -07:00
Jeff Squyres
67b94acd42 mpich: add fine-grained MPI conformance versions 
Similar to the Open MPI and MVAPICH packages.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2015-10-17 07:06:06 -04:00
Jeff Squyres
43f58d9f61 openmpi: update the MPI conformance for each Open MPI version 2015-10-16 15:27:22 -04:00
Jeff Squyres
f39e40664f openmpi: add v1.10.0 and update v1.8.2->v1.8.8 2015-10-16 15:26:58 -04:00
Ben Boeckel
9ec4ae83af netcdf: link to MPI 
Newer GNU linker refuses to use transitive linking; if netcdf calls
MPI_Allreduce, it must link the providing library directly.

Also switched to CMake because I don't know autoconf well enough to know
how to put MPI stuff into it.
 2015-10-15 09:20:16 -04:00
Gregory L. Lee
5dd39bfca5 bug fix for github issue 122 2015-10-08 08:12:30 -07:00
Todd Gamblin
5d64012868 Merge branch 'features/libxcb-1.11.1' into develop 2015-10-08 00:13:47 -07:00
Massimiliano Culpo
17de9a37f1 gcc : fixed spec file 2015-10-06 18:49:18 +02:00
Massimiliano Culpo
d44571257a spec file : everything is dumped, only link rule is modified 2015-10-06 18:49:04 +02:00
Massimiliano Culpo
f068d1ba57 GCC : added variants for libelf, binutils, isl. gcc@5.0: still has issues 2015-10-06 18:48:47 +02:00
Gregory L. Lee
6fcf16b710 added libxcb version 1.11.1 2015-10-05 12:59:26 -07:00
Mario Melara
75d30b08fb Added current version 3.2 of libffi version 3.1 has a bug that interferes with glib 2015-10-01 21:51:55 -07:00
Adam Moody
5563c66675 update scr to 1.1.8 2015-09-29 18:18:34 -07:00
Mario Melara
13eb461ec3 Adding bowtie2 package along with patch 2015-09-24 11:21:54 -07:00
Mario Melara
521632b3dc Added samtools bioinformatics software 2015-09-23 16:30:44 -07:00
Todd Gamblin
6d4eed3845 Merge pull request #102 from RasmusWL/features/fish 
Add fish (shell) package
 2015-09-23 01:37:59 -07:00
Todd Gamblin
82ea7aec51 Merge pull request #106 from justintoo/add-package-doxygen 
(Package) Add Doxygen (v1.8.10)
 2015-09-23 01:37:31 -07:00
Todd Gamblin
d474eeb424 Merge pull request #110 from scalability-llnl/features/boostupdate 
update boost package for new releases
 2015-09-23 00:32:22 -07:00
Todd Gamblin
5d6baacc56 Merge pull request #111 from scalability-llnl/features/protobuf 
add protobuf package
 2015-09-23 00:31:26 -07:00
Todd Gamblin
46cf0a23d9 Merge pull request #112 from scalability-llnl/features/glog 
add glog package
 2015-09-23 00:30:37 -07:00
Todd Gamblin
f02af701e5 Merge pull request #113 from scalability-llnl/features/gflags 
add gflags package
 2015-09-23 00:29:50 -07:00
Todd Gamblin
5f826a0ab7 Merge pull request #114 from scalability-llnl/features/snappy 
Features/snappy
 2015-09-23 00:27:27 -07:00
Adam Moody
84823ed828 add lmdb package 2015-09-22 12:17:01 -07:00
Adam Moody
3ade141829 add leveldb package 2015-09-22 11:59:09 -07:00
Adam Moody
30acc6f2f0 add snappy package 2015-09-21 16:45:59 -07:00
Adam Moody
22ba02b22b add gflags package 2015-09-21 16:40:23 -07:00
Adam Moody
b5d7cd55ce add glog package 2015-09-21 16:30:11 -07:00
Adam Moody
e4e22ed17e add protobuf package 2015-09-21 16:19:50 -07:00
Justin Too
99ca0f3153 (Package) Add Doxygen (v1.8.10) 2015-09-11 20:29:18 +00:00
Rasmus Wriedt Larsen
b06117f77a Add fish (shell) package 2015-09-03 14:19:27 -07:00
Adam Moody
ac088bae6a update boost 2015-09-01 16:02:14 -07:00
Todd Gamblin
6af49d41fd Add elfutils. 2015-08-27 00:10:53 -07:00
Todd Gamblin
13fd742610 Merge branch 'features/pidx' into develop 2015-08-26 23:48:52 -07:00
Todd Gamblin
babbc5bb45 Minor fix-ups for PIDX 2015-08-26 23:48:36 -07:00
Gregory L. Lee
2c3e7a6f87 added graphviz dependency and dysect variant to STAT 2015-08-25 11:48:12 -07:00
Gregory L. Lee
1c9c5a385d added graphviz and dependencies 2015-08-25 11:38:39 -07:00
Gregory L. Lee
689dbb8fb6 use filter_file instead of patch 2015-08-24 08:51:41 -07:00
Peer-Timo Bremer
40b21d7cbe Initial version of PIDX package 2015-08-17 15:38:12 -07:00
Gregory L. Lee
bd1cd83d71 added lapack and blas deps, fixed gfortran compiler dependency 2015-08-17 11:54:14 -07:00
Gregory L. Lee
92ea86dc36 moved lapack package to netlib-lapack 2015-08-14 16:30:35 -07:00
Gregory L. Lee
ec47ab16ce updated blas and lapack packages 2015-08-14 16:27:51 -07:00
Todd Gamblin
c8f65c1530 Fix 2.6 incompatibility 2015-08-13 00:21:02 -07:00
Todd Gamblin
17c2a0d6f3 Merge pull request #92 from trws/flux-build 
pre-alpha flux build and requisite dependencies
 2015-08-13 00:02:49 -07:00
Todd Gamblin
58f848fa29 Merge pull request #94 from alfredo-gimenez/dev-pandas 
Fixed py-pandas package
 2015-08-13 00:00:35 -07:00
Todd Gamblin
f34b04e555 Merge pull request #87 from alfredo-gimenez/develop 
Added gui and cscope features to Vim package
 2015-08-12 23:58:27 -07:00
Alfredo Gimenez
d6bf9c9887 Cscope vim variant depends on cscope 2015-08-07 07:58:04 -07:00
Alfredo Gimenez
d017c5080a Fixed py-pandas package 2015-08-07 00:03:14 -07:00
Alfredo Gimenez
067ecb90b9 Added cscope (dependency for vim+cscope) 2015-08-06 09:28:28 -07:00
Tom Scogland
7182671f8f pre-alpha flux build and requisite dependencies 
NOTE: the ncurses package now installs *BOTH* versions, wide and non-wide
character for compatibility with packages that require either one.  It may be
desirable for this to be an option in the future.
 2015-08-03 11:59:52 -07:00
Mike Nolta
7ebb4fcedc add missing gmp dependency to mpfr package 2015-08-01 16:00:13 -04:00
Tom Scogland
016eef6a16 adding the bear compilation database generator 2015-07-29 14:21:03 -07:00
Alfredo Gimenez
00ab6eb616 Vim with added feature support, including gvim 2015-07-23 11:38:02 -07:00
Tom Scogland
6ad5210216 adding a zsh package 2015-07-22 11:35:51 -07:00
Todd Gamblin
e097696390 Update concretize to check for more changes and iterate further. 2015-07-16 01:12:11 -07:00
Todd Gamblin
8828dbf2e8 Remove superfluous print in vim. 2015-07-14 23:48:07 -07:00
Todd Gamblin
2e90599283 Merge branch 'develop' of github.com:scalability-llnl/spack into develop 2015-07-14 23:43:59 -07:00
Todd Gamblin
6f8a4318c5 Remove python 2.6-incompatible format expression. 2015-07-13 18:25:18 +00:00
Tom Scogland
889485181e adding gnu global tags and exuberant ctags 2015-07-10 13:54:38 -07:00
Tom Scogland
fda208f6b8 adding YAPF (Yet Another Python Formatter) 2015-07-09 14:55:27 -07:00
Gregory L. Lee
2e37523428 for LaunchMON added latest git commit and dependences 2015-07-08 11:25:41 -07:00
Gregory L. Lee
ddfc276688 removed workaround 2015-07-02 15:14:30 -07:00
Florent Pruvost
e06d351f7a add cblas headers in install directory 2015-07-02 02:05:00 -07:00
Todd Gamblin
7625881cb3 Merge pull request #75 from alfredo-gimenez/develop 
Thanks!
 2015-07-02 01:27:47 -07:00
Todd Gamblin
6f94a2567b Add py-lockfile and py-python-daemon packages. 2015-07-02 00:40:25 -07:00
Alfredo Gimenez
25c1678004 Commented out old version 2015-06-23 17:39:23 -07:00
Alfredo Gimenez
9f27ddc256 New mpfr release invalidates previous download link (not sure where old version is...) 2015-06-23 17:36:57 -07:00
Todd Gamblin
a51d4afe3e Minor simplification (os.environ -> env) 2015-06-20 20:25:12 -07:00
Alfredo Gimenez
314ecc54fe Thrift python support 2015-06-18 17:29:16 -07:00
Alfredo Gimenez
f832719ceb Added silo 4.8 with HDF5 (for LULESH 2.0) 2015-06-18 12:31:01 -07:00
Alfredo Gimenez
0c028e24b4 Removed Lua dependency 2015-06-18 10:30:02 -07:00
Alfredo Gimenez
55e24548c3 Added Thrift (HBase management in C++) 2015-06-18 10:29:34 -07:00
Tom Scogland
912c29471a adding python pyelftools package 2015-06-17 15:19:46 -07:00
Todd Gamblin
607f263fbc Merge pull request #61 from alfredo-gimenez/develop 
Mitos 0.9.1
 2015-06-11 16:31:28 -07:00
Todd Gamblin
3cb10f92af Merge pull request #62 from trws/tmuxinator 
Partial ruby extension and tmuxinator package
 2015-06-11 16:31:15 -07:00
Todd Gamblin
9955df896b Merge pull request #63 from trws/silver-searcher 
adding package for the silver searcher
 2015-06-11 16:31:04 -07:00
Tom Scogland
a087fd71e4 Removing comment line 
Missed that the auto-generated comment line stuck around.
 2015-06-11 13:57:19 -07:00
Tom Scogland
d92ac2a6b2 Small ruby enhancement and tmuxinator package 
It is currently less painful to pull the source from github, compile it into a
gem, then install the gem, than it is to download a gem and install it.  This
still lacks an activation mechanism, but `spack use tmuxinator` is functional.
 2015-06-11 13:51:53 -07:00
Alfredo Gimenez
afe3c5b6bb Mitos 0.9.1 2015-06-11 11:02:51 -07:00
Tom Scogland
cd581d1d5a adding package for the silver searcher 2015-06-10 14:24:38 -07:00
Tom Scogland
2d465ffd10 partial upgrade to vim package 2015-06-10 14:14:31 -07:00
Todd Gamblin
04bcf43649 Merge pull request #58 from trws/python-cffi 
Python cffi
 2015-06-10 00:36:37 -07:00
Todd Gamblin
874326a1ad Merge pull request #56 from trws/uuid-task-and-taskd 
package files for libuuid, needed for flux and taskwarrior packages
 2015-06-10 00:35:30 -07:00
Tom Scogland
c8ad456fd6 nettle depends on gmp, without it the nettle build fails on gcc 4.9.2 2015-06-09 19:37:42 -07:00
Tom Scogland
8839eeb421 new package files for python-cffi and its dependency pycparser 2015-06-09 19:36:08 -07:00
Tom Scogland
eab3d4811e package files for libuuid, needed for flux and taskwarrior packages, along with the taskwarrior packages 2015-06-09 19:26:49 -07:00
Todd Gamblin
e64c0f4e4e Fix Boost finding in Dyninst 8.2.1. 2015-06-09 17:48:38 -07:00
Todd Gamblin
bde9c7eee3 Upate ATLAS and netlib-blas. 2015-06-07 15:41:15 -07:00
Todd Gamblin
0570660d81 Make blas a virtual dependency, default netlib-blas. 2015-06-06 18:23:12 -07:00
Todd Gamblin
26b9592780 Add disablement of cpu throttle check. 2015-06-06 18:19:05 -07:00
Todd Gamblin
8b9dcfe635 Delete lapack/atlas combined package. 2015-06-06 18:18:51 -07:00
Todd Gamblin
5d94864b6c Rename netlib_blas -> netlib-blas 2015-06-06 18:18:44 -07:00
Todd Gamblin
50d7b3df2b Merge branch 'psaravan-fastmath' into features/fastmath 
Conflicts:
	var/spack/packages/lapack/package.py
 2015-06-06 18:17:59 -07:00
Todd Gamblin
8215c85619 Merge branch 'develop' into features/fastmath 2015-06-06 18:15:52 -07:00
Todd Gamblin
c43b5d670b Remove dummy fastmath package. 2015-06-06 17:48:33 -07:00
Todd Gamblin
b6ad37557f fix up Saravan's petsc install 2015-06-06 17:41:15 -07:00
Todd Gamblin
d266bf0184 Working Hypre, PARPACK. 2015-06-06 17:21:11 -07:00
Todd Gamblin
5294e2b9b9 CGM package working on cab. 2015-06-06 16:56:59 -07:00
Todd Gamblin
c5ab3f4e82 CBLAS package working and patching in spack compilers. 2015-06-06 16:29:37 -07:00
Todd Gamblin
f29fc5822b Working boxlib package. 2015-06-06 16:16:19 -07:00
Todd Gamblin
b9746de52e Working ARPACK package. 2015-06-06 15:26:54 -07:00
Todd Gamblin
03780ea105 Remove autosave files from saravan's PR 2015-06-06 15:26:54 -07:00
Todd Gamblin
422a75e4b8 Clean up arpack build, use the Spack f77 compiler. 2015-06-06 15:26:54 -07:00
Saravan Pantham
1f0246f970 Updated HDF5 to use MPI. 2015-06-06 15:26:43 -07:00
Saravan Pantham
9d71093500 Updated Zoltan. 2015-06-06 15:26:42 -07:00
Saravan Pantham
fd34f4b119 Added more FASTMath packages. 2015-06-06 15:26:38 -07:00
Saravan Pantham
c174fe6199 Fixed BLAS and Lapack installations 2015-06-06 15:26:31 -07:00
Saravan Pantham
d461aa3722 Added Lapack package 2015-06-06 13:06:18 -07:00
Saravan Pantham
a23e1579e3 Added BLAS package 2015-06-06 13:06:17 -07:00
Todd Gamblin
ab31f989db Merge Alfredo's Mitos changes from github with Greg's Python changes. 2015-06-06 12:53:28 -07:00
Gregory L. Lee
96ec75f7fe Merge branch 'develop' of ssh://cz-stash.llnl.gov:7999/scale/spack into develop 2015-06-04 15:49:57 -07:00
Gregory L. Lee
5ac5c021b8 new package versions 2015-06-04 15:49:55 -07:00
Alfredo Gimenez
dae33a31c0 Dyninst 8.2.1+ dependency for cmake 2015-06-03 22:02:47 -07:00
Alfredo Gimenez
15aee0de1a Mitos updated with new release 2015-06-03 21:58:44 -07:00
Gregory L. Lee
c4f5a881e6 new Python extensions 2015-06-03 10:08:07 -07:00
Gregory L. Lee
6dffe2ddd1 updated url 2015-06-03 10:07:21 -07:00
Gregory L. Lee
74b0a9c059 updated Python extension versions 2015-06-01 08:39:01 -07:00
Gregory L. Lee
83af842a74 fixed cython activation conflict 2015-06-01 08:38:32 -07:00
Todd Gamblin
f813d823a1 Merge branch 'features/optional-deps' into develop 
This includes:
- Much better variant support (+debug/-debug)
- Optional dependency support (depends_on(... , when='<condition>')
- New config file format (YAML in ~/.spack)
- New Spec format (YAML in $prefix/.spack/spec.yaml)
 2015-05-18 16:16:20 -07:00
Matthew LeGendre
46b91ddf57 YAML config files for compilers and mirrors 2015-05-18 16:01:21 -07:00
Gregory L. Lee
50970b72d8 added py-pandas 2015-05-12 13:47:48 -07:00
Todd Gamblin
cd5fa128c5 Work on SPACK-41: Optional dependencies work for simple conditions. 
- Can depend conditionally based on variant, compiler, arch, deps, etc
  - normalize() is not iterative yet: no chaining depends_ons
  - really need a SAT solver, but iterative will at least handle
    simple cases.

- Added "strict" option to Spec.satisfies()
  - strict checks that ALL of other's constraints are met (not just
    the ones self shares)
  - Consider splitting these out into two methods: could_satisfy() and
    satisfies()
    - didn't do this yet as it would require changing code that uses
      satisfies()

- Changed semantics of __contains__ to use strict satisfaction (SPACK-56)

- Added tests for optional dependencies.

- The constrain() method on Specs, compilers, versions, etc. now
  returns whether the spec changed as a result of the call.
 2015-05-12 09:56:59 -07:00
Todd Gamblin
ef9deeccd1 Merge branch 'features/yaml-spec' into features/optional-deps 2015-05-10 19:28:47 -07:00
Todd Gamblin
43e5465592 Fix bug in directory layout hidden files() 2015-05-10 17:56:27 -07:00