Commit graph

5342 commits

Author SHA1 Message Date
Yifan Zhu
30aaa37472 r-gdsfmt: new package (#7035) 2018-01-23 09:42:10 +01:00
Scott Wittenburg
d2c3441527 Update gl/qt options for vtk package (#6551)
This provides options for hardware and software rendering with the
gl API and updates the vtk package to make use of those options:

* Create new "gl" virtual package, provided by mesa
* Add external-only "opengl" package, which represents a system
  install that provides gl
* For vtk: prefer system gl implementation by default to get speed
  up from hardware rendering. When software rendering is specifically
  requested (+osmesa), try to use the llvmpipe approach, as it is
  much faster.
* Make qt dependency optional for vtk
* Add basic support for VTK on osx
* qt: Depend on virtual gl package, rather than mesa impl
2018-01-22 10:46:44 -08:00
Kelly (KT) Thompson
55c3451b87 Version update for 2.22 (#7023) 2018-01-22 07:12:00 +01:00
Eric
cfd68e48a4 perl-graph: Create new package (#7022) 2018-01-22 07:10:58 +01:00
Eric
1733dff977 perl-array-utils: Create new package (#7020) 2018-01-22 07:10:17 +01:00
Eric
02b9cf5085 perl-app-cmd: Create new package (#7019) 2018-01-22 07:09:34 +01:00
Eric
cd82a9e050 perl-perlio-gzip: Create new package (#7018) 2018-01-22 07:08:41 +01:00
Geoffrey Oxberry
227b58bb67 Visit 2.13.0 (#6947)
* visit: add version 2.12.3

* visit: add version 2.13.0

* visit: enable building with hdf5+mpi

* visit: add qwt dependency

Building VisIt requires Qwt, which is not part of Qt. Prior to this
commit, this dependency was not included in the VisIt spack package,
resulting in a configure-time bug with an error message indicating a
missing Qwt dependency.

This commit fixes this bug by adding Qwt dependency information.
2018-01-21 09:16:23 -06:00
Hans Pabst
202c413ae0 LIBXSMM 1.8.2 (#6896)
* Included LIBXSMM 1.8 into the list of available versions.

* LIBXSMM 1.8.1

* LIBXSMM 1.8.2 (release notes: https://github.com/hfp/libxsmm/releases/tag/1.8.2).

* LIBXSMM: Use join_path instead of hard-coding the separator. Install "version.txt" into the documentation directory. Removed installing "README.md" from LIBXSMM's root directory as it overrides README.md provided there. The latter uses correct relative references to the other documentation parts.

Note: Apparently, "FC=/path/to/gfortran spack install libxsmm" is currently needed for Spack since does not pick-up the Fortran compiler (but incorrectly uses the C compiler instead).

* LIBXSMM: converted Package into MakefilePackage (to address https://github.com/spack/spack/pull/6896#discussion_r160993923).

* LIBXSMM: account for changed file set in 1.8.2 onward (addresses https://github.com/spack/spack/pull/6896#pullrequestreview-88670974).

* Fixed incorrect behavior of "+header-only", which did not install the "src" folder. Addressed https://github.com/spack/spack/pull/6896#discussion_r162783180 and https://github.com/spack/spack/pull/6896#discussion_r162783221.

* Use conflicts msg argument to present a friendly error message.
2018-01-21 09:14:26 -06:00
Denis Davydov
6170ca863d dealii: update CMake dependency (#7010) 2018-01-20 21:59:24 +01:00
sknigh
27bb18bae2 Added libgit2@0.26.0 (#6952) 2018-01-20 21:57:41 +01:00
sknigh
e98a85c807 Added added libssh2@1.8.0 (#6951) 2018-01-20 21:56:55 +01:00
Michael Kuhn
9f0e17a538 flex: restrict GCC conflict to newer Ubuntu releases (#6963)
flex 2.6.4 compiles fine with GCC 7 on (at least) Ubuntu 16.04 and Fedora 27.
2018-01-20 21:36:45 +01:00
Geoffrey Oxberry
9d84e7eb5c llvm: add version 5.0.1 (#6957) 2018-01-20 21:09:31 +01:00
Michael Kuhn
2fc3e23e47 gtkplus: Update to 2.24.32 (#6964) 2018-01-20 19:42:21 +01:00
Yifan Zhu
7fc654b6a3 r-getopt: new package (#6973) 2018-01-20 19:18:07 +01:00
Geoffrey Oxberry
b83936a1f9 ipopt: add version 3.12.9 (#6982) 2018-01-20 19:11:18 +01:00
Eric
2192644071 perl-list-moreutils: Create new package (#6997) 2018-01-20 19:09:23 +01:00
peetsv
e3b8d6ef08 sniffles: add version 1.0.7 (#7004) 2018-01-20 18:39:29 +01:00
健美猫
0dee143c72 A new package: lumpy-sv. (#7009) 2018-01-20 18:38:31 +01:00
Ondřej Čertík
40ab8fe31f Add Abinit 8.6.3 (#6959) 2018-01-20 10:20:00 -06:00
Bruno Turcksin
62d53b2a5b Add boost 1.66.0 (#7000) 2018-01-20 17:10:25 +01:00
Geoffrey Oxberry
cf736ae911 qt@4 : update corewlan patch for OS X 10.1[23] (#6943)
Update the qt4 CoreWLAN patch to apply to macOS/OS X 10.12 and 10.13,
which both still use the CoreWLAN framework in their SDKs (although
it's apparently deprecated?!). Without this patch update, `spack
install qt@4.8.6` fails on macOS/OS X 10.12 because the linker
cannot find headers from the CoreWLAN framework.
2018-01-20 07:53:50 -06:00
Geoffrey Malcolm Oxberry
7c4c6e72ad vtk@:6.1.0 : disable Obj-C gc for XCode >= 5.1
Apple removed support for Objective-C garbage collection in binaries
in XCode 5.1, but VTK 6.1.0 and earlier set flags for garbage
collection, resulting in a compile-time bug when compiling VTK using
any recent version of XCode (i.e., Apple Clang).

This commit fixes this bug by removing the garbage collection flags
via setting the variable `VTK_REQUIRED_OBJCXX_FLAGS` to the empty
string. This variable has the same value (i.e., the empty string) in
the root-level CMakeLists.txt file for VTK 6.2.0 and later.
2018-01-19 13:44:36 -08:00
Geoffrey Malcolm Oxberry
48ae4c22b2 vtk@:6.1.0 : fix NetCDF C++ bindings detection
VTK 6.1.0 and earlier do not use paths stored in `NETCDF_CXX_ROOT` to
detect the presence of NetCDF C++ headers and libraries. Consequently,
VTK 6.1.0 does not build.

This commit fixes this bug by setting the advanced variables
`NETCDF_CXX_INCLUDE_DIR` and `NETCDF_CXX_LIBRARY` at the command line
to specify the directory containing headers and the full library path
for the NetCDF C++ bindings.
2018-01-19 13:44:36 -08:00
Christoph Junghans
a102177db7
miniqmc: initial commit (#6991) 2018-01-19 09:38:21 -07:00
becker33
3686c250ed Fix type issues with setting flag handlers (#6960)
The flag_handlers method was being set as a bound method, but when
reset in the package.py file it was being set as an unbound method
(all python2 issues). This gets the underlying function information,
which is the same in either case.

The bug was uncovered for parmetis in #6858. This is a partial fix.
Included are changes to the parmetis package.py file to make use of
flag_handlers.
2018-01-18 17:55:44 -08:00
Howard Pritchard
568db965cf ucx: update for release 1.2.2 (#6990)
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2018-01-18 13:41:16 -07:00
junkudo
9704369f17 ipopt package: set compiler flags in configure (#6714)
This makes use of the new flag_handler logic from 28d8784a to set
compiler flags for ipopt by passing them as arguments to the build
system rather than injecting them into the compiler wrappers. This
avoids conflicts between flags that are chosen by the build system
and flags that are set by the user.
2018-01-18 10:39:08 -08:00
Adam J. Stewart
498c522a31
Add url_for_version to pango package (#6939) 2018-01-15 14:05:27 -06:00
Geoffrey Oxberry
48b127a225 ipopt: add version 3.12.8, relax metis version requirements (#6936)
* ipopt: add version 3.12.8

* ipopt: allow linking with metis 5
2018-01-15 09:31:50 -06:00
Geoffrey Oxberry
67219a1340 ruby: fix +openssl & +readline variants (#6935)
* ruby: fix +openssl & +readline variants

Fix "unqualified variable spec['openssl']" error in the ruby package
that arises when trying to install the `+openssl` variant by
referencing the `spec` field in the `Ruby` class. A similar error
arises when trying to install the `+readline` variant; this error is
also fixed by this patch.

* ruby: make +openssl variant default to on

Ruby's gem command will fetch gems from HTTPS resources by default
(e.g., gem install bundler). Without openssl, request to fetch gems
bounce back with the error

```
ERROR:  While executing gem ... (Gem::Exception)
    Unable to require openssl, install OpenSSL and rebuild ruby (preferred) or use non-HTTPS sources
```

Without the ability to install gems -- required for some spack
packages -- the ruby installation has limited utility for many users.

* ruby: update rubygems ssl cert to fix ssl errors

The SSL certificate bundled with Ruby 2.2.0 is outdated, so e.g., `gem
install erubis` will fail with an SSL certificate error. This commit
installs the updated SSL certificate to the proper directory so that
gems can be downloaded and installed from RubyGems.
2018-01-15 09:00:07 -06:00
Federico Ficarelli
6093d6df7d Reworked the graphviz package (#6865)
The url in graphviz has been fixed and its version has been 
updated to the latest available (2.40.1). Added variants for 
expat, qt, gtk+ and ghostscript.
2018-01-15 15:26:14 +01:00
Milton Woods
43190a6bf6 Py-fparser: python parser for Fortran code (#6794)
* py-fparser: parser for Fortran 77..2003 code

* py-fparser: guard against external pytest.ini

* py-fparser: define 'develop' version as latest master branch

* py-fparser: fetch tagged versions from git repo

* py-fparser: add latest release 0.0.6

* py-fparser: whitespace adjustments for flake8

* py-fparser: inherit python dependency from PythonPackage

* py-fparser: rely on spack to resolve sub-dependencies

* py-fparser: try type='test' for py-pytest

* py-fparser: fetch release tarballs instead of git commits

* py-fparser: test deptype is available, remove comment

* py-fparser: limit versions that use py-six

* py-fparser: version ranges do not need a lower bound
2018-01-14 15:42:17 -06:00
lingnanyuan
f7db5d9cac r-rappdirs: Create new package. (#6891)
* r-rappdirs: Create new package.

* r-rappdirs: Add version constraints.
2018-01-14 15:41:32 -06:00
Milton Woods
a11765dbdf Qt fixes for RHEL6/7 (#6895)
* qt: move licence acceptance from qt3krell.patch to qt3accept.patch

* qt: ensure that ptrdiff_t is defined for qt@3.3.8b

* qt: disable webglplugin for qt@5.10~opengl

* qt: depend on libxext (for qt@3 and @4)

* qt: avoid X dependencies on darwin platforms

* Revert "qt: avoid X dependencies on darwin platforms"

This reverts commit 05ce08de94be1e02d7e2f2dae0c1ae59baa3f65a.

* qt: limit range of versions depending on libxext
2018-01-14 15:41:17 -06:00
healther
8f6fe9e030 Fix installation of bash-completion (#6911)
* Fix installation of bash-completion

* use run_before decorator instead of overriding install method
2018-01-14 15:40:22 -06:00
healther
e583d789d6 Update py-backports-functools-lru-cache to 1.4 (#6915)
* Update py-backports-functools-lru-cache to 1.4

* fix old url
2018-01-14 15:39:53 -06:00
healther
a03674ebbd make vim python3 compatible (#6925) 2018-01-14 15:39:33 -06:00
David Pérez-Suárez
0adcb610fe Updated catch to newer version (up to 2.1.0) (#6933)
Also updated all the sums from previous versions
2018-01-14 15:39:10 -06:00
healther
d30dc2bf15 Add version 1.81 of cppcheck (#6912) 2018-01-14 08:14:55 -06:00
Simone Bnà
e2908af9b4 Catalyst package (#6834)
* catalyst: added catalyst package

* catalyst: missing libx11 and libxt dependencies

* catalyst: added std cmake args

* catalyst: override paraview git describe cmake variable

* catalyst: fixed flake8 errors
2018-01-13 22:20:39 -06:00
Michael Kuhn
df7876ab54 Do not construct path to perl command manually (#6927)
Instead, use spec['perl'].command.path.
2018-01-13 22:10:42 -06:00
healther
589ea856a5 Add PyNN 0.9.1 (#6926) 2018-01-13 22:10:10 -06:00
healther
b3c96e2e40 Update checksum for version 0.5.3 of yaml-cpp (#6924) 2018-01-13 22:09:36 -06:00
healther
47b554a959 Add py-pyflakes versions up to 1.6.0 (#6923) 2018-01-13 22:09:17 -06:00
healther
b87f9ae5d4 Add py-pycodestyle versions up to 2.3.1 (#6922) 2018-01-13 22:08:51 -06:00
healther
7c4a193b3f Update py-neo to 0.5.2 (#6921) 2018-01-13 22:08:38 -06:00
healther
a2d7939e27 Add py-mccabe versions up to 0.6.1 (#6920) 2018-01-13 22:08:18 -06:00
healther
176814373c add version 1.26 to py-git-review and fix run_env (#6919)
* Update py-git-review to version 1.26.0

* Fix py-git-review package

TypeError: object of type 'Version' has no len()
2018-01-13 22:08:05 -06:00