Commit graph

28533 commits

Author SHA1 Message Date
snehring
739f040fa8
bucky: fix compile errors with newer gccs (#30314) 2022-04-27 02:11:02 -06:00
Massimiliano Culpo
d5fc859f46
ASP-based solver: handle installed specs from unknown namespaces (#30092)
fixes #28259

This commit discard specs from unknown namespaces from the
ones that can be "reused" during concretization. Previously
Spack would just error out when encountering them.
2022-04-27 02:10:46 -06:00
Erik Schnetter
753f4a4bc3
reprimand: update requests on boost (#30109) 2022-04-27 09:46:22 +02:00
Lhxone
8c280d98ca
suntans: add new package (#30149) 2022-04-27 09:35:40 +02:00
eugeneswalker
d5e1fa5771
py-cryptography@35: tell cargo to use cli git, not cargo internal git… (#30307) 2022-04-26 20:58:28 -06:00
Michael Kuhn
f30b79b2c5
libgit2: add 1.4.3 and 1.3.1 (#30122) 2022-04-26 20:54:30 -06:00
Erik Schnetter
54146d44f9
fossil: New package (#30311)
* fossil: new package

* fossil: Format code
2022-04-27 00:47:24 +00:00
Tamara Dahlgren
0c31ab87c9
Feature: Allow re-use of run_test() in install_time_test_callbacks (#26594)
Allow re-use of run_test() in install_time_test_callbacks

Co-authored-by: Greg Becker <becker33@llnl.gov>
2022-04-26 17:40:05 -07:00
Lhxone
e49cccb0d9
New package: CaNS (#30218) 2022-04-27 00:33:36 +00:00
haralmha
7a1841c464
hadoop: Update url and add version 3.3.2 (#29812)
* hadoop: Update url and add version 3.3.2

* Update url
2022-04-26 17:26:28 -07:00
haralmha
40ebeb2dc8
arrow: Add version 7.0.0 (#29962) 2022-04-26 16:57:56 -07:00
Lhxone
e5444b9a77
New package: Swan (#30217) 2022-04-26 16:32:19 -07:00
haralmha
89cc16a9cd
gnuplot: Add version 5.4.3 and add workaround for not found DSO (#30163) 2022-04-26 16:03:36 -07:00
Ken Raffenetti
a24070d532
docs: Fix ROCmPackage example syntax (#30168) 2022-04-26 16:00:40 -07:00
Kyle Gerheiser
f473fd8084
Add g2tmpl versions 1.10.2 and 1.10.1 (#30202) 2022-04-26 15:56:06 -07:00
John Hodrien
5055f5e3e2
Power9 build fix for ctffind4 (#30300)
Only tested against the latest version, which is why it only applies the patch
when using 4.1.14.

Fix comes from:

https://grigoriefflab.umassmed.edu/forum/software/ctffind_ctftilt/installing_ctffind_4114_ibm_power9
2022-04-26 17:13:37 -05:00
Joel Falcou
0b26103c07
EVE now use main instead of develop as main branch (#30220) 2022-04-26 15:34:45 -06:00
Greg Becker
f99614be02
old concretizer: update deprecation warning (#30227) 2022-04-26 14:17:17 -07:00
Mark W. Krentel
c02e83092e
intel-xed: add version 2022.04.17 (#30239)
1. Add version 2022.04.17 (new numbering scheme) and update mbuild resource.
2. Branch 'master' is now 'main'.
3. Old rev 10.2019.03 needs a patch for python vs python3.
2022-04-26 14:15:10 -07:00
Kyle Gerheiser
85e99fa154
Add NCIO v1.1.0 (#30306)
See release notes https://github.com/NOAA-EMC/NCEPLIBS-ncio/releases/tag/v1.1.0
2022-04-26 21:03:26 +00:00
John W. Parent
83b91246b1
Windows: fix termination of process output redirection (#29923)
The parent thread in the process stdout redirection logic on Windows
was closing a file that was being read in child thread, which lead to
error-based termination of the reader thread. This updates the
interaction to avoid the error.
2022-04-26 12:56:13 -07:00
Andrea Valenzuela
0f4b228eff
Add checksum for py-ipywidgets@7.7.0 (#30155)
* Add checksum for py-ipywidgets@7.7.0

* Correct py-widgetsnbextension and py-ipython dependencies

* Update widgetsnbextension dependency to 3.6

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Allow requirement to next versions

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Revert ipyhton dependencies

* Add widgetsnbextension@3.6.0 checksum

Co-authored-by: aandvalenzuela <andrea.valenzuela.ramirez@cern.ch>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-04-26 14:48:53 -05:00
Lucas Frérot
2abbad1ca5
thrust: added version 1.12.1-1.16.0 (#30292) 2022-04-26 11:27:25 -07:00
Lucas Frérot
43d8fe212f
py-uvw: updated versions (#30297) 2022-04-26 10:06:41 -07:00
Valentin Volkl
84befcdfe2
opendatadetector: add new package (#30298)
* opendatadetector: add new package

* style

* opendatadetector: add hep tag
2022-04-26 09:25:41 -07:00
Tamara Dahlgren
def8fce250
ginkgo: fix stand-alone test directory / install_test (#28412) 2022-04-26 09:20:10 -07:00
lorddavidiii
3a0aba0835
spack spec: add '--format' argument (#27908) 2022-04-26 09:08:56 -07:00
snehring
254cd624fe
exabayes: specify c++11 (#30282) 2022-04-26 17:22:27 +02:00
Erik Schnetter
802a48fb43
boost: update list of modules (#30104)
Co-authored-by: Tim Haines <thaines.astro@gmail.com>
2022-04-26 17:12:47 +02:00
Mark W. Krentel
c81affa551
setup_package: don't unload modules on Cray when run with --dirty (#30261)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-04-26 16:53:10 +02:00
Simon Pintarelli
3e51304b68
spfft: pass cuda_arch to cmake (#30295) 2022-04-26 14:59:48 +02:00
snehring
62abbeaf6f
express: specify patch version range (#30283) 2022-04-26 11:27:32 +02:00
H. Joe Lee
80e24f3f69
googletest: change "master" to "main" (#30285)
There's no master branch on GitHub for googletest.
2022-04-26 11:27:08 +02:00
dlkuehn
24f5069584
snpeff: change jdk dependency to java (#30048)
Co-authored-by: David Kuehn <las_dkuehn@iastate.edu>
2022-04-26 11:25:03 +02:00
Kevin Huck
5da78991d4
apex: add v2.5.1 (#30287) 2022-04-26 11:19:07 +02:00
Asher Mancinelli
cfb5d5f988
hiop: add v0.6.1, add new variant "cusolver" (#30288) 2022-04-26 11:12:14 +02:00
Michael Kuhn
a10d262f5f
glib: add 2.72.1 and 2.70.5 (#30274) 2022-04-26 11:10:34 +02:00
Harmen Stoppels
16e926d374
gawk: drop gettext by default (#30290)
Reduces the number of packages to bootstrap gcc (which actually has
--disable-nls).
2022-04-26 11:02:03 +02:00
Massimiliano Culpo
b9d6a5103d
ASP-based solver: allow configuring target selection (#29835)
* ASP-based solver: allow configuring target selection

This commit adds a new "concretizer:targets" configuration
section, and two options under it.

 - "concretizer:targets:granularity" allows switching from
considering only generic targets to consider all possible
microarchitectures.

 - "concretizer:targets:host_compatible" instead controls
whether we can concretize for microarchitectures that
are incompatible with the current host.

* Add documentation

* Add unit-tests
2022-04-25 17:19:51 -07:00
iarspider
834f8e04ca
Environments: add flag to skip printing concretized specs (#30272)
With an active environment, you can now run "spack concretize --quiet"
and it will suppress printing the concretized specs.
2022-04-25 15:54:54 -07:00
Rohit Goswami
3ade5516a2
MAINT: Add a debug variant to PyTorch (#30267)
* MAINT: Add a debug flag

* MAINT: Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-04-25 15:33:37 -05:00
eugeneswalker
b41de6d86b
exago +cuda, +rocm: pass amdgpu_target, cuda_arch to dependencies, as appropriate (#30259)
* exago +rocm: pass amdgpu_target to raja, hiop dependencies

* +cuda builds: pass cuda_arch to dependencies

* hiop: pass cuda_arch to dependencies
2022-04-25 19:48:35 +00:00
Erik Schnetter
c72fba7e4c
gcc: Make gcc 11.3 build on Darwin (#30278)
Don't apply a Darwin-specific patch that doesn't work on 11.3 any more.

Closes https://github.com/spack/spack/issues/30264.
2022-04-25 20:15:51 +02:00
Erik Schnetter
96113a5dc6
gcc: Make gcc 11.3 build on Darwin (#30278)
Don't apply a Darwin-specific patch that doesn't work on 11.3 any more.

Closes https://github.com/spack/spack/issues/30264.
2022-04-25 20:15:31 +02:00
Seth R. Johnson
db0335fa54
OpenMPI: improve PMix handling (#29449)
* openmpi: always require pmix for 4:

`~pmix` is not applicable to version 4+, since it always builds a vendored
copy of pmix (currently 3.2.3).

* pmix: relax version requirements

When the version range was specified, newer versions didn't exist.
Also use normalized spack versions rather than artificial .9.9 /.0.0.

* openmpi: restrict pmix versions

pmix option isn't available for OpenMPI@1, and according to
https://github.com/open-mpi/ompi/issues/7988 , OpenMPI 4.0.1 will not
build with pmix@3.1.5.

* pmix: add newer versions

* OpenMPI: re-express conflicts/configure logic as conditional variants

This relies partly on `self.enable_or_disable` and its ilk to emit an
empty list when the variant isn't applicable.
2022-04-25 11:54:20 -06:00
Massimiliano Culpo
268c671dc8
ASP-based solver: always consider version of installed packages (#29933)
* ASP-based solver: always consider version of installed packages

fixes #29201

Explicitly add facts for versions of installed software when
using the --reuse option, so that we could consider versions
that are not declared in package.py
2022-04-25 10:09:49 -07:00
Harmen Stoppels
3dd4999fd7
spec.py: make parser select from environment (#30276)
The parser is already committing a crime of querying the database for
specs when it encounters a `/hash`. It's helpful, but unfortunately not
helpful when trying to install a specific spec in an environment by
hash. Therefore, consider the environment first, then the database.

This allows the following:

```console
$ spack -e . concretize
==> Starting concretization
==> Environment concretized in 0.27 seconds.
==> Concretized diffutils
 -   7vangk4  diffutils@3.8%gcc@10.3.0 arch=linux-ubuntu20.04-zen2
 -   hyb7ehx      ^libiconv@1.16%gcc@10.3.0 libs=shared,static arch=linux-ubuntu20.04-zen2

$ spack -e . install /hyb7ehx
==> Installing libiconv-1.16-hyb7ehxxyqqp2hiw56bzm5ampkw6cxws
...
==> libiconv: Successfully installed libiconv-1.16-hyb7ehxxyqqp2hiw56bzm5ampkw6cxws
  Fetch: 0.01s.  Build: 17.54s.  Total: 17.55s.
[+] /tmp/tmp.VpvYApofVm/store/linux-ubuntu20.04-zen2/gcc-10.3.0/libiconv-1.16-hyb7ehxxyqqp2hiw56bzm5ampkw6cxws
```
2022-04-25 08:41:48 -07:00
Hervé Yviquel
c1ed51e767
mpich: add variant to enable per VCI critical sections (#27840) 2022-04-25 17:31:13 +02:00
Theofilos Manitaras
2a8a0aa156
Add libfabric version 1.14.1 (#30275) 2022-04-25 08:51:12 -06:00
eugeneswalker
5073613c6e
slepc +rocm: pass amdgpu_target to dep (#30252) 2022-04-25 08:50:49 -06:00