Commit graph

29684 commits

Author SHA1 Message Date
eugeneswalker
0662bbdc43
openblas %oneapi: patch f_check for proper linkage (#31737) 2022-07-25 15:38:11 -07:00
Richard Berger
7be0dac36b
new package: singularity-eos (#31500) 2022-07-25 23:41:24 +02:00
snehring
885a7a1979
gdal: fixing typo for libxml2 (#31734) 2022-07-25 14:05:45 -06:00
psakievich
8cde20997d
GCC: Add bootstrap conflict for M1 (#31189) 2022-07-25 15:12:54 -04:00
Paul Ferrell
babb0edf07
LLVM requires swig version > 3 (#31625) 2022-07-25 15:50:22 +02:00
haralmha
bf838fe15f
llvm: Add missing include for version range 8 to 11 (#31639) 2022-07-25 11:39:12 +02:00
Harmen Stoppels
b56871dd9c
Fix stage with uri params (#31618)
* don't determine extension of a url

* parse url to drop query params from filename
2022-07-25 10:31:13 +02:00
snehring
fe0643a14e
wget: replacing prior workaround with proper fix (#31699)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2022-07-25 10:29:28 +02:00
Adam J. Stewart
cd4d657c2f
py-torchdata: add new package (#31704)
* py-torchdata: add new package

* third_party deps only in 0.4+
2022-07-25 10:22:53 +02:00
Adam J. Stewart
afbb4dbc88
py-torchmetrics: add v0.9.3 (#31707) 2022-07-25 10:22:25 +02:00
Adam J. Stewart
24869fd469
py-geopandas: add v0.11.1 (#31710) 2022-07-25 10:22:15 +02:00
Adam J. Stewart
d46e81798a
py-sphinx: add v5.1.0 (#31711) 2022-07-25 10:21:52 +02:00
Adam J. Stewart
5850afc9dc
Sphinx 5.1.0 breaks doc builds (#31709) 2022-07-24 21:45:01 +00:00
Ishaan Desai
241c7f7914
[py-pyprecice] add v2.4.0.0 (#31697)
* Add py-pyprecice v2.4.0.0

* Adding lower bound to pip dependency

* Removing when=@:2.1 from dependencies packaging and pip
2022-07-24 15:31:51 -05:00
Morten Kristensen
85b3c1d812
py-vermin: add latest version 1.4.1 (#31708) 2022-07-24 16:21:40 +02:00
Harmen Stoppels
215a99cbc3
clingo patch fixed in patch release (#31690) 2022-07-22 10:34:04 -07:00
Harmen Stoppels
517293efe0
llvm: fix patch already applied on main branch (#31694) 2022-07-22 09:46:03 -07:00
Harmen Stoppels
5cf7d8e9ef
coreutils: gnulib patch (#31693)
Co-authored-by: snehring <snehring@iastate.edu>
2022-07-22 15:36:14 +02:00
Harmen Stoppels
fce861d2ac
Mark external as explicit only when installing explicitly (#31665) 2022-07-22 15:20:17 +02:00
Hector Martinez-Seara
cfdfdf77e0
gromacs: Added version 2021.6 (#31692) 2022-07-22 15:18:59 +02:00
Harmen Stoppels
799553d302
autotools: add -I flag when non-standard libtool (#31677)
When
1. Spack installs libtool,
2. system libtool is installed too, and
3. system automake is used

Spack passes system automake's `-I <prefix>` flag to itself, even though
it's a default search path. This takes precedence over spack's libtool
prefix dir. This causes the wrong `libtool.m4` file to be used (since
system libtool is in the same prefix as system automake).

And that leads to error messages about incompatible libtool, something
something LT_INIT.
2022-07-22 15:11:38 +02:00
Massimiliano Culpo
5cf7bf3770
Use pkg_cls in spack.mirror.get_all_versions (#31636)
fixes #31627

spack.mirror.get_all_versions now uses the package class
instead of the package object in its implementation.

Ensure spec is concrete before staging for mirrors
2022-07-22 10:04:17 +02:00
Erik Schnetter
2b0b573827
mpitrampoline: New version 4.2.0 (#31683) 2022-07-22 09:22:24 +02:00
Nicholas Sly
0e6b57e953
py-torch: use immutable URLs for open-ce patches (#31672)
* Update open-ce patches for py-torch to us immutable URLs.  Update magma dependency specs to be more explicit.

* Address comments for PR regarding URLs and conflicting variants.

Co-authored-by: Nicholas Cameron Sly <sly1@llnl.gov>
2022-07-21 18:02:34 -06:00
Stephen Sachs
ee39fab226
[py-numpy] Newer versions do not build with icc (#31637)
* [py-numpy] Newer versions do not build with `icc`

Workaround until https://github.com/numpy/numpy/issues/22011 is solved.

* [py-numpy] Remove whitespaces
2022-07-21 12:33:41 -06:00
AMD Toolchain Support
5ffc095f63
Add version 3.2 of AMD libraries (#31538) 2022-07-21 13:32:28 +02:00
Adam J. Stewart
f85c4ec288
py-torch: ~caffe2 by default (#31656) 2022-07-21 09:43:02 +02:00
Adam J. Stewart
1af76946a4
py-torchvision: fix __version__ for stable releases (#31657) 2022-07-21 09:36:11 +02:00
Adam J. Stewart
609bc89fd9
py-gpytorch: add v1.8.0 (#31649) 2022-07-21 09:35:22 +02:00
Adam J. Stewart
de5a12c366
py-nbmake: add v1.3.3 (#31651) 2022-07-21 09:34:59 +02:00
Richard Berger
7d9c517c88
flecsi: correct version 2.x depends_on (#31658)
Propagate +shared to legion
2022-07-21 09:34:36 +02:00
Hadrien G
aa68f23177
root does not actually install libraries in /lib but in /lib/root (#31624) 2022-07-21 01:33:52 -06:00
Johannes Blaschke
15d50d81db
ncdu: add v1.16 and v1.17 (#31659) 2022-07-21 09:24:25 +02:00
shanedsnyder
56f5492fc0
darshan: add v3.4.0 to runtime/util packages (#31666) 2022-07-21 09:16:41 +02:00
snehring
d8983497f7
giflib: restrict patch to darwin (#31670) 2022-07-21 08:52:50 +02:00
psakievich
22798d7540
Don't restage develop specs when a patch fails (#31593)
* make develop specs not restage when a patch fails
* add a unit test
2022-07-20 13:55:16 -07:00
Harmen Stoppels
bf8c2b05b3
py-wheel: 0.37.1 (#31619) 2022-07-20 09:05:39 -06:00
haralmha
cf3774aa46
xgboost: Add version 1.6.1 and make openmp variant compatible with clang (#31557) 2022-07-20 07:45:01 -07:00
Harmen Stoppels
e7be8dbbcf
spack stage: add missing --fresh and --reuse (#31626) 2022-07-20 13:50:56 +02:00
Harmen Stoppels
e3aca44601
installer.py: require "explicit: True" in the install arguments to mark a package "explicit" (#31646) 2022-07-20 12:09:45 +02:00
Harmen Stoppels
43673fee80
py-pip: 22.x (#31621) 2022-07-18 19:13:42 -06:00
Servesh Muralidharan
918637b943
Update py-xdot to use python_purelib #31616 (#31628)
Issue discussed in https://github.com/spack/spack/issues/31616
2022-07-18 12:56:19 -07:00
Cory Bloor
5c59e9746a
rocblas: tighten tensile dependencies (#31414)
* rocblas: make tensile dependencies conditional

* Remove rocm-smi from the rocblas dependency list

rocm-smi was added to the rocblas dependency list because Tensile was a
dependency of rocBLAS and rocm-smi was a dependency of Tensile. However,
that reasoning was not correct.

Tensile is composed of three components:

  1. A command-line tool for generating kernels, benchmarking them, and
     saving the parameters used for generating the best kernels
     (a.k.a. "Solutions") in YAML files.
  2. A build system component that reads YAML solution files, generates
     kernel source files, and invokes the compiler to compile then into
     code object files (*.co, *.hsco). An index of the kernels and their
     associated parameters is also generated and stored in either YAML
     or MessagePack format (TensileLibrary.yaml or TensileLibrary.dat).
  3. A runtime library that will load the TensileLibrary and code object
     files when asked to execute a GEMM and choose the ideal kernel for
     your specific input parameters.

rocBLAS developers use (1) during rocBLAS development. This is when
Tensile depends on rocm-smi. The GPU clock speed and temperature must be
controlled to ensure consistency when doing the solution benchmarking.
That control is provided by rocm-smi. When building rocBLAS, Tensile is
used for (2). However, there is no need for control of the GPU at that
point and rocm-smi is not a dependency. At runtime, the rocBLAS library
uses Tensile for (3), but there is again no dependency on rocm-smi.

tl;dr: rocm-smi is a dependency of the tensile benchmarking tool,
which is not a build dependency or runtime dependency of rocblas.
2022-07-18 12:21:40 -07:00
eugeneswalker
b065d69136
e4s ci: add ginkgo +rocm (#31603) 2022-07-18 14:19:31 +02:00
Luke Diorio-Toth
710ec58df0
kraken2: add v2.1.2 (#31613) 2022-07-18 02:45:48 -06:00
Massimiliano Culpo
70be612f43
containerize: fix missing environment activation (#31596) 2022-07-18 10:31:16 +02:00
haralmha
c589f97cf0
lhapdf: add gettext libs explicitly (#31555)
Co-authored-by: Valentin Volkl <valentin.volkl@cern.ch>
2022-07-18 10:25:08 +02:00
Adam J. Stewart
ad4f551c22
py-pyarrow: aarch64 patch no longer applies/required (#31609) 2022-07-18 09:44:58 +02:00
Adam J. Stewart
37134aa331
py-kornia: add v0.6.6 (#31611) 2022-07-18 09:43:41 +02:00
Glenn Johnson
bb1632c99d
Fixes for kallisto package (#31617)
This PR contains several fixes for the kallisto package.

- create hdf5 variant as hdf5 is optional beginning with 0.46.2
- provide patch for 0.43 to link against libz
- provide patch for older versions to build again gcc-11 and up
- patch and code to use autoconf-2.70 and up
2022-07-18 09:37:21 +02:00