George Young
47daba3dc1
blast-plus: add 2.14.1 ( #40179 )
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Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-09-24 09:33:38 -06:00
Brian Vanderwende
46062d98fd
visit: Add NetCDF format support ( #40065 )
2023-09-24 17:26:34 +02:00
François Trahay
4e37084ed4
EZTrace: add v2.1 ( #39748 )
2023-09-24 17:12:32 +02:00
Thomas Madlener
e7c229393d
garfieldpp: Fix the signature of setup_dependent_build_environment ( #40133 )
2023-09-24 17:04:41 +02:00
Houjun Tang
87fd9c3e93
sw4: add v3.0 ( #40146 )
2023-09-24 16:54:32 +02:00
snehring
676f2a3175
hmmer: adding new version 3.4 ( #40148 )
2023-09-24 16:53:18 +02:00
Adam J. Stewart
5fe7f5329b
py-torchvision: minimize dependencies ( #40163 )
2023-09-24 16:27:09 +02:00
Adam J. Stewart
c6a3dd03ab
py-torchmetrics: add v1.2.0 ( #40164 )
2023-09-24 16:25:34 +02:00
Hartmut Kaiser
ebdd5e28f2
flecsi: bumping HPX requirement to V1.9.1 ( #32355 )
2023-09-24 16:24:33 +02:00
dependabot[bot]
068abdd105
build(deps): bump mypy from 1.5.0 to 1.5.1 in /.github/workflows/style ( #40166 )
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Bumps [mypy](https://github.com/python/mypy ) from 1.5.0 to 1.5.1.
- [Commits](https://github.com/python/mypy/compare/v1.5.0...v1.5.1 )
---
updated-dependencies:
- dependency-name: mypy
dependency-type: direct:production
update-type: version-update:semver-patch
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Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-09-24 16:21:41 +02:00
dependabot[bot]
9ec372a86c
build(deps): bump actions/checkout from 4.0.0 to 4.1.0 ( #40172 )
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Bumps [actions/checkout](https://github.com/actions/checkout ) from 4.0.0 to 4.1.0.
- [Release notes](https://github.com/actions/checkout/releases )
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md )
- [Commits](3df4ab11eb...8ade135a41
2023-09-24 16:08:15 +02:00
Alec Scott
5e05f6b7c6
bfs: add v3.0.2 ( #40176 )
2023-09-24 15:53:15 +02:00
Alec Scott
7988d8c67d
glab: add v1.33.0 ( #40177 )
2023-09-24 15:53:01 +02:00
Alec Scott
658a3f2fdb
hugo: add v0.118.2 ( #40178 )
2023-09-24 15:52:42 +02:00
Rocco Meli
582f0289af
Add mda-xdrlib and update pyedr and panedr ( #39912 )
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* ensure umpire~cuda~rocm when ~cuda~rocm
* Add mda-xdrlib and update pyedr and panedr
* Update var/spack/repos/builtin/packages/py-mda-xdrlib/package.py
Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
* code review
* fix python pin, conflated with py-tomli
---------
Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
2023-09-24 02:07:59 -06:00
eugeneswalker
95b737d923
trilinos +shylu: patch to resolve trilinos issue #12048 ( #40169 )
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* trilinos +shylu: patch to resolve trilinos issue #12048
* e4s ci: build xyce ^trilinos+shylu
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Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
2023-09-24 16:28:03 +09:00
Adam J. Stewart
d7e9a13f53
protobuf: add v4.24.3 ( #40152 )
2023-09-23 20:04:10 +02:00
Tom Payerle
25e45f9f07
py-tinyarray: add version 1.2.4, needed for python@3.10 ( #40171 )
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* py-tinyarray: add version 1.2.4, needed for python@3.10
Added @1.2.4
Require @1.2.4 when using python@3.10:
* py-tinyarray: format fix
2023-09-23 08:57:46 -05:00
Cameron Smith
38cc51ec36
pumi: add version 2.2.8 ( #40143 )
2023-09-22 14:38:46 -07:00
Massimiliano Culpo
5c10c29923
Pin the version of tools used in CI, have dependabot manage their version ( #40066 )
2023-09-22 10:33:01 -07:00
eugeneswalker
daf95227bf
e4s cray rhel stack: expand to full spec list ( #40111 )
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* e4s cray rhel stack: expand to full spec list
* comment out gasnet; require %gcc for unzip
* require openblas@0.3.20 to get around %cce error; follow up with issue report
* comment out failing specs;
* comment out axom and xyce due to errors
* improve clarity of failing specs
2023-09-22 16:04:20 +00:00
Adam J. Stewart
480a5e0848
py-pyzmq: fix order of decorators ( #40157 )
2023-09-22 17:20:56 +02:00
Satish Balay
783e253f7d
llvm: add version 17.0.1 ( #40108 )
2023-09-22 14:41:23 +02:00
Harmen Stoppels
716196930a
Remove distutils dependency in Spack ( #40153 )
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* msvc.py: don't import distutils
Introduced in #27021 , makes Spack forward incompatible with Python.
The module was already deprecated at the time of the PR.
* update spack package
2023-09-22 13:04:58 +02:00
Adam J. Stewart
f42402129a
py-matplotlib: add v3.7.3 ( #39961 )
2023-09-22 11:23:57 +02:00
Adam J. Stewart
419878f035
Add support for macOS Sonoma ( #40115 )
2023-09-22 04:21:26 -05:00
Harmen Stoppels
32927fd1c1
py-pyzmq: force recythonize of older versions ( #40151 )
2023-09-22 03:18:34 -06:00
Harmen Stoppels
092a5a8d75
py-gpy: re-cythonize & drop python upperbound ( #40089 )
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* py-gpy: drop cython induced python upperbound
* py-gpy: bump scipy
* py-fn-py: python bounds for old version, new version w/o
* py-statsmodels: force recythonization
* py-gpy: clarifying comment about cython build type
2023-09-22 04:18:01 -05:00
Adam J. Stewart
f082b19058
py-pyproj: add v3.6.1 ( #40128 )
2023-09-22 03:29:37 -05:00
Harmen Stoppels
eb7e26006f
py-hpbandster: use build/run deps instead of build ( #40102 )
2023-09-22 02:18:39 -06:00
Adam J. Stewart
2d3d9640dc
py-pandas: add v2.1.1 ( #40127 )
2023-09-22 10:16:01 +02:00
Adam J. Stewart
f95080393a
libzmq: fix build with Apple Clang 15.0.0 ( #40116 )
2023-09-22 10:14:43 +02:00
Adam J. Stewart
0b8203940a
OpenBLAS: add v0.3.24 ( #40132 )
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Co-authored-by: adamjstewart <adamjstewart@users.noreply.github.com>
2023-09-22 08:58:23 +02:00
Adam J. Stewart
3bd7859e7f
py-scikit-learn: add v1.3.1 ( #40126 )
2023-09-22 08:39:38 +02:00
eugeneswalker
599b612edf
add met v11.1.0 ( #40138 )
2023-09-22 08:35:10 +02:00
eugeneswalker
6f9126d738
add metplus v5.1.0 ( #40139 )
2023-09-22 08:30:38 +02:00
eugeneswalker
59399ab1f8
add scotch v7.0.4 ( #40140 )
2023-09-22 08:30:22 +02:00
Lydéric Debusschère
b67f619448
py-aiofiles: Add version 0.7.0 required by py-cylc-flow ( #39987 )
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* py-aiofiles: Add version 0.7.0 required by py-cylc-flow
* py-aiofiles: update from review
* depends on py-setuptools before 0.6
* depends on py-poetry-core after 0.7
Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
* py-aiofiles: Taking reviewing into account; add a upper version constraint for Python.
* py-aiofiles: update from review, set lower version of python
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
---------
Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-09-22 00:29:03 -05:00
eugeneswalker
2755706115
Revert "e4s-cray: drop in ci as there are no runners ( #40122 )" ( #40144 )
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This reverts commit bd8d0324a9
2023-09-21 22:38:26 -06:00
Thiago Genez
43ed8a12b7
openssh: Fix segfault on x86_64-darwin ( #40044 )
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Import patches from homebrew
2023-09-22 01:41:22 +02:00
Alex Richert
3f5b4a4907
Update grib-util package.py ( #40120 )
2023-09-21 14:15:06 -07:00
Garth N. Wells
cd16478aba
py-fenics-dolfinx: add version upper bound for Python dependency ( #40125 )
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* py-fenics-dolfinx: add upper bound on Python version
* Small fix
* Update var/spack/repos/builtin/packages/py-fenics-dolfinx/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
---------
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-09-21 13:17:45 -06:00
Rocco Meli
aa87c747f9
Add missing platform in Charm++ ( #40051 )
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Add missing `linux` platform in Charm++ when building for `arm8`.
2023-09-21 20:31:17 +02:00
Steven R. Brandt
9210b19398
lorene: add C++ headers to the install ( #39909 )
2023-09-21 20:27:23 +02:00
George Young
4d156b9e6b
relion: add 4.0.1, fix build on Rocky8 ( #40074 )
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Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-09-21 20:24:03 +02:00
Jonas Thies
56df8b61a2
phist: fix compatibility with python@3.11: ( #40082 )
2023-09-21 20:21:35 +02:00
Anton Kozhevnikov
170867e38a
SIRIUS: remove old versions ( #40105 )
2023-09-21 20:18:58 +02:00
Wileam Y. Phan
5ca9fd6c82
Fix false detection of llvm-amdgpu as llvm and llvm-doe ( #40113 )
2023-09-21 20:15:20 +02:00
Robert Underwood
ef165c80b3
py-nanobind add cmake path ( #40079 )
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* py-nanobind add cmake path
* fix style
---------
Co-authored-by: Robert Underwood <runderwood@anl.gov>
2023-09-21 13:15:02 -05:00
Lydéric Debusschère
6859694e8e
[add] py-graphql-ws: new recipe, required by py-cylc-uiserver ( #39991 )
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* [add] py-graphql-ws: new recipe, required by py-cylc-uiserver
* py-graphql-ws: remove constraint on version for python
2023-09-21 13:14:11 -05:00
