Commit graph

27441 commits

Author SHA1 Message Date
Ryan Marcellino
3e3e387a45
New package: py-pymdown-extensions (#32324) 2022-08-23 00:44:39 -05:00
Vanessasaurus
04339fbe9a
Automated deployment to update package flux-core 2022-08-23 (#32320)
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2022-08-22 20:33:42 -06:00
Dom Heinzeller
560b6432cc
Update ESMF from JCSDA/NOAA-EMC spack fork (esmf@8.3.0 with external parallelio) (#32222)
* Update ESMF package from JCSDA/NOAA-EMC spack fork

* Update var/spack/repos/builtin/packages/esmf/package.py

Fix url_for_version

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

* [@spackbot] updating style on behalf of climbfuji

Co-authored-by: Jim Edwards <jedwards@ucar.edu>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
Co-authored-by: climbfuji <climbfuji@users.noreply.github.com>
2022-08-22 17:36:07 -07:00
Cody Balos
bea8936e02
sundials: add v6.3.0 and logging-mpi variant (#32315) 2022-08-22 15:37:59 -06:00
Ryan Marcellino
95e8c4a615
New package: py-ghp-import (#32316) 2022-08-22 14:29:16 -07:00
Wouter Deconinck
c92db8a22a
gaudi: consistent test dependencies when +examples (#32134)
* gaudi: consistent test dependencies when +examples

Gaudi requires testing to be enabled for examples to be built, so all
test dependencies are also there for `+examples`. This PR fixes a
missing pytest dependency when `+examples` is used but no testing is
enabled. The construct with the loop is to ensure the identical
dependencies are always used, even as version ranges my start to differ.

Testing with gaudi_add_tests was added in v35r0. Some nosetests and
QMtests were in the tree before, but not accessible it seems. The
effective dependency since 35.0 is also applied for pytest, extending
the range that was there before disentangling `optional`, at
9d67d1e034/var/spack/repos/builtin/packages/gaudi/package.py

* gaudi: version 36.7 in other PR...
2022-08-22 14:24:36 -07:00
Valentin Volkl
afecd70bc8
dd4hep: add version 1.22 (#32209) 2022-08-22 15:21:50 -06:00
Adam J. Stewart
9296a76658
py-shapely: add v1.8.3 (#32218) 2022-08-22 14:09:38 -07:00
Ryan Marcellino
e6e569e07c
New package: py-py-f90nml (#32314) 2022-08-22 19:03:42 +00:00
Eric Brugger
ca9b2fe6ad
VisIt: Add patch to include jpeg library in install. (#32245) 2022-08-22 11:59:07 -07:00
Mark Abraham
70f0a725cc
hwloc: fix build with +onepai-level-zero (#31622)
Flags to configure were erroneously managed to configure twice. 

Removed the one that was wrong so that a configure warning is no longer issued.
2022-08-22 12:45:58 -06:00
Barry Rountree
fd80e34037
teckit: Fixes missing xmlparse.h issue. (#32295)
The "release" tarball provided by github lacks several files in
the SFconv/expat/xmlparse directory, including xmlparse.  Using
tarballs based off of version tags solves the problem.

o Changes version() to use commits associated with version tags.
o Adds several additional versions.
o Adds myself as maintainer.
o Adds hook to execute autogen.sh.
o Adds autotools &ct dependences.
o Removes expat dependence.
2022-08-22 18:39:28 +00:00
Paul Romano
7fc78b8b0f
OpenMC: add v0.13.1 (#32263)
* openmc: add v0.13.1

* Add @paulromano as maintainer of openmc and py-openmc

* Address review comments from @adamjstewart

* Add back MPI variant in openmc package
2022-08-22 18:09:37 +00:00
Adam J. Stewart
1039caabed
crunch: add new package (#31980) 2022-08-22 18:05:06 +00:00
Ryan Mast
5edb0fe96a
helics: update v3 options and add missing versions (#32121)
* helics: update v3 options and add missing versions

* helics: allow using openssl 3.x for encryption support

* helics: fix style errors

* helics: Apply suggestion from code review

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-08-22 17:49:57 +00:00
iarspider
2860f2f70a
Add checksum for py-requests 2.27.1, 2.28.0, 2.28.1 (#31896)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-08-22 11:46:01 -06:00
Jean-Paul Pelteret
85b8a41ccb
deal.II 9.4: Fix issues due to override of CMake FIND_PACKAGE macro (#32079) 2022-08-22 11:37:52 -06:00
Harmen Stoppels
6e5d6ebf99
openmpi: fix patches for %nvhpc (#32308) 2022-08-22 10:57:51 -06:00
Adam J. Stewart
177e2e2672
xgboost: GCC 8+ required (#32282) 2022-08-22 08:48:18 -07:00
Arjun Guha
72b133a875
racket: fix spec (#32304) 2022-08-22 14:50:11 +00:00
Adam J. Stewart
dc0836804f
py-rasterio: add v1.3.2 (#32277) 2022-08-22 16:15:33 +02:00
kwryankrattiger
a38beeaed2
HPX: ROCm and Cuda conflict needed (#32178)
Discovered this missing conflict when building the e4s enviroment with
unify:when_possible. #31940
2022-08-22 16:13:59 +02:00
Kelly (KT) Thompson
1c61f0420a
Provide patches provided by consumers of draco. (#32281) 2022-08-22 16:04:58 +02:00
Robert Cohn
00b244853e
enable packages that use numpy for oneapi e4s stack (#32293)
* enable geopm oneapi

* enable packages that depend on py-numpy

* disable nan warnings

* undo geopm enable

* undo geopm, it has multiple compile issues
2022-08-22 07:02:22 -07:00
Kendra Long!
1a030aa417
draco: add v7_14_0 (#32267) 2022-08-22 16:02:11 +02:00
Eric Brugger
c28f1c0b42
VisIt: add conduit and mfem variants (#32255) 2022-08-22 15:59:29 +02:00
Olivier Cessenat
a20c9b2d8e
keepassxc: option autotype with pcsclite (#32288) 2022-08-22 15:50:41 +02:00
Jonas Thies
88a58abcf8
openfoam-org: add v9 and v10 (#32274) 2022-08-22 15:33:40 +02:00
Rémi Lacroix
e16f0b9f12
Molden: update URLs. (#32207) 2022-08-22 14:48:44 +02:00
Valentin Volkl
4d0612abfc
baurmc: correct compile flag (#31305) 2022-08-22 14:28:20 +02:00
Valentin Volkl
408076adf0
prophecy4f: add hep tag, install to share (#31308) 2022-08-22 14:27:54 +02:00
Cory Bloor
dde6d00ab9
hip@4.5.2: fix installation (#31416)
In a fast-moving project with as many forks as LLVM, it's difficult to
accurately determine if a function exists just by checking the version
number. The existing version check fails, for example, with llvm-amdgpu
from ROCm 4.5. It is more robust to directly check if the function
exists.
2022-08-22 12:39:09 +02:00
Alan Sill
4c64a0fab2
VASP: add v6.3.2; handle changes to makefile.include naming pattern (#31701)
Added the SHA256 for version 6.3.2 and added logic to eal with the change of naming pattern for the makefile.include files that now appears to leave out the "linux_" prefix. (Changes should be. backwards compatible.)

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
Co-authored-by: alansill <alansill@users.noreply.github.com>
2022-08-22 12:21:00 +02:00
haralmha
01a4844ac4
feynhiggs: update url (#31760) 2022-08-22 12:20:09 +02:00
Adam J. Stewart
2ff132a62f
py-isort: add v5.10.1 (#32302) 2022-08-22 11:09:09 +02:00
Olivier Cessenat
f7424e1fea
qscintilla: coherence with py-sip (#32128) 2022-08-21 11:32:10 -07:00
Wileam Y. Phan
ab31256ee7
gcc: add 12.2.0 (#32270) 2022-08-21 15:30:37 +02:00
sparkyniner
21e6679056
spack list: add --tag flag (#32016)
* modified list.py and added functionality for --tag

* Removed long and very long, shifted rest of code above return statement

* removed results variable

* added import statement at top

* added the line accidentally deleted

* added line accidentally deleted

* changed p.name to p, added line inside if statement

* line order switched

* [@spackbot] updating style on behalf of sparkyniner

* ran update completion command

* add tests

* Update lib/spack/spack/test/cmd/list.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* [@spackbot] updating style on behalf of sparkyniner

* changed argument to mock_packages and moved code under filter by tag

* removed bad rebase code and added additional test

* [@spackbot] updating style on behalf of sparkyniner

* added line removed earlier

* added line removed earlier

* replaced function

* added more recommended changes

Co-authored-by: sairaj <sairaj@sairajs-MacBook-Pro.local>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-08-20 16:09:44 -06:00
Morten Kristensen
8d02e2cc52
py-vermin: add latest version 1.4.2 (#32287) 2022-08-20 13:35:07 -05:00
Axel Huebl
39beafc99a
Ascent, Conduit & VTK-h: don't assume I have Fortran (#32285)
* VTK-h: don't assume I have Fortran

Don't assume I have a working Fortran compiler in my toolchain :)

* Conduit: Do not Assume Fortran

* Ascent: Do not Assume Fortran

* fix style
2022-08-20 10:12:23 -07:00
kwryankrattiger
fff929d5ab
WarpX: Add hints for FindMPI (#31842)
This seems to be needed on some cray systems and is safe on normal
desktops.
2022-08-20 15:45:03 +02:00
Olivier Cessenat
51619fdb00
gxsview: new version 2022.05.09 (#32289) 2022-08-20 14:33:10 +02:00
Axel Huebl
7db1c69945
Vis: macOS llvm-openmp (#32284)
Add some OpenMP lib provider for Apple-Clang to the vis packages.
2022-08-20 01:11:03 -07:00
Sreenivasa Murthy Kolam
11a4f5e25d
Enable Tensorflow for ROCm. Add ROCm dependencies. (#32248)
* Build Tensorflow using the fork for rocm. Initial commit

* re-order the versions

* fix style errors

* address review comments

* add conflicts for rocm version

* address review comments

* remove rocm variant as its added by ROCmPackage
2022-08-20 01:50:38 +00:00
eugeneswalker
5590cad1ef
py-globus-sdk: add new versions; unpin py-cryptography version constraint (#32280)
* add mothra tests

* py-globus-sdk: add new versions; unpin py-cryptography version constraint

* Update var/spack/repos/builtin/packages/py-globus-sdk/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-08-19 19:30:07 -06:00
eugeneswalker
09486c082c
py-pyjwt: fix py-cryptography version constraints (#32279)
* py-pyjwt: fix py-cryptography version constraints

* Update var/spack/repos/builtin/packages/py-pyjwt/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-08-19 18:50:20 -06:00
Adam J. Stewart
dab46296b6
py-setuptools: add v64.0.0 (#32078) 2022-08-19 14:20:08 -07:00
Axel Huebl
7f314947dd
Doc: WarpX SENSEI Work-Around (#32276)
Follow-up to #31542
2022-08-19 14:10:00 -06:00
Rémi Lacroix
56e4203450
netcdf-cxx: Update the download URL (#32275) 2022-08-19 18:44:14 +00:00
Adam J. Stewart
b0990aa1fa
py-pygments: add v2.13.0 (#32168) 2022-08-19 18:09:51 +00:00