hlrs-software-stack/spack
7
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity
1077 commits 3 branches 52 tags 188 MiB
Commit graph

695 commits

Author SHA1 Message Date
Gregory Becker
35532d6b0a Changed cray architecture subclass to add proper targets for front at back end nodes 2015-11-04 13:00:35 -08:00
Mario Melara
37260962e5 changed some potential syntax errors and added a way for target to recognize class 2015-11-04 12:57:29 -08:00
Gregory Becker
5ac974c9b2 Enforced that the architecture subclass cannot add a target that shares a name with a target alias 2015-11-04 12:50:22 -08:00
Mario Melara
058e72d29c Added default target and also front end and back end targets 2015-11-02 11:08:55 -08:00
Mario Melara
eb2cf1698f Fixed some issues with naming 2015-11-02 11:08:08 -08:00
Mario Melara
9a91da9ccd Added arch_path to list of modules path 2015-10-30 15:59:28 -07:00
Mario Melara
e39586c81d Reverted back all architecture way of finding modules 2015-10-30 15:58:49 -07:00
Mario Melara
2d87bb92ed Changed front-end and back-end to front_end and back_end to avoid error 2015-10-30 15:58:20 -07:00
Mario Melara
db0695e46a architectures folder where the Architecture subclasses reside 2015-10-30 15:57:00 -07:00
Gregory Becker
6e56070386 improved aliasing in target method in architecture.py 2015-10-30 15:15:36 -07:00
Gregory Becker
d177184777 added target method to architecture.py and minor cleanup 2015-10-30 15:12:29 -07:00
Mario Melara
0a004e0fce Merge branch 'features/spackathon' of https://github.com/NERSC/spack into features/spackathon 
Merge Gregory Becker's commits with my own architecture commits
 2015-10-30 14:53:49 -07:00
Mario Melara
7ab921ff02 Changed architecture class and added class Target 2015-10-30 14:46:26 -07:00
Gregory Becker
382d8478bf prototype of new architecture concretization saved as new_concretize_architecture in concretize.py 2015-10-30 10:23:33 -07:00
Gregory Becker
09597fe8dc updated the executible to return stderr when specified. Added load_module to build_environment.py, loads target 2015-10-30 09:44:28 -07:00
Mario Melara
38508c5a3f Created a control flow logic that will loop through the strategies and find compilers using that. TODO: Need to find a way to locate their executables 2015-10-22 12:02:26 -07:00
Mario Melara
a89abb435f Changed structure of class, add compiler strategy is a method and can create a dict 2015-10-21 11:32:59 -07:00
Mario Melara
9b387e7682 Added strategy method in init 2015-10-21 11:09:05 -07:00
Gregory Becker
51b69ef00b initial fetch on crayport 2015-10-21 09:27:57 -07:00
Mario Melara
c31da9bc8f Made sure architecture works with yaml file 2015-10-20 14:10:54 -07:00
Mario Melara
ca3cc5b23e Refactored architecture class. Now it will automagically create a dict upon instantiation. 2015-10-20 13:37:06 -07:00
Mario Melara
3ba2842b53 Got Architecture class working the way i wanted to. Next to write tests 2015-10-20 13:33:21 -07:00
Mario Melara
fec197ccac Fixed the output of sys_type(), might need to add back the error handling part 2015-10-15 15:25:13 -07:00
Mario Melara
ccdf105759 Commented out a long list of tests to just include my arch test 2015-10-15 12:48:12 -07:00
Mario Melara
d328f4c3b6 Test suite for architecture class and functions 2015-10-15 12:47:26 -07:00
Mario Melara
29e03ac851 Added __eq__ testing method. Created tests for it in test/ folder 2015-10-15 12:46:44 -07:00
Mario Melara
4f21344e87 Started created the Architecture class for Spack to use 2015-10-14 19:41:07 -07:00
Mario Melara
b6d2a12ceb Started changing the find in modules method written by Todd 2015-10-07 15:57:29 -07:00
Mario Melara
06fe879745 Merge branch 'features/crayproto' of https://github.com/scalability-llnl/spack into develop 2015-10-07 14:55:05 -07:00
Matthew LeGendre
fac4428766 Documentation for external packages. 2015-10-05 14:04:33 -07:00
Matthew LeGendre
18f0b24a7f Add tests for spack external dependencies, plus fixes for issues found by those tests. 2015-10-05 11:37:36 -07:00
Matthew LeGendre
e4d2ba30b5 Fix failure in spack.test.config.ConfigTest from incorrect compiler config merging 2015-10-05 11:37:36 -07:00
Matthew LeGendre
650c9d4e36 Allow spack to build against external non-spack-installed packages. 2015-10-05 11:37:36 -07:00
Matthew LeGendre
53d70fff01 Fix type error with YAML config when merging lists from different configs. 2015-10-05 11:36:06 -07:00
Matthew LeGendre
53cde110b1 Update Spack mirror command to match docs 2015-10-05 11:36:06 -07:00
Matthew LeGendre
987cd9e78f Update docs for YAML configuration files and preferred concretization 2015-10-05 11:36:06 -07:00
Matthew LeGendre
ee68a76a19 Bug fixes from testing spack preferred packages 2015-10-05 11:36:06 -07:00
Matthew LeGendre
8d7b7e5d5d Use preferred package rules when concretize'ing specs 2015-10-05 11:36:06 -07:00
Matthew LeGendre
b5c597b318 Allow specs to be sorted based on preferred packages, versions, compilers, variants and dependencies. 2015-10-05 11:36:05 -07:00
Matthew LeGendre
59f89dd3be Allow long names in format string variables 2015-10-05 11:36:05 -07:00
karenyyng
f4e72f33c8 added dependencies for py-h5py 2015-10-05 08:24:33 -07:00
Todd Gamblin
d00314c621 Protptype cray compiler detection and support 2015-10-05 01:30:25 -07:00
karenyyng
e9f7d033ff make sure submodule is added in the correct location 2015-10-03 19:13:08 -07:00
Todd Gamblin
8818f4ac5e Remove enabled variants from install prefix. 
- these make the prefix too long in many cases.
- users can figure out which install is which by querying.
 2015-09-27 17:01:35 -07:00
Todd Gamblin
adbd393c39 Remove special characters (@, %, +, ~, etc) from stage name 2015-09-27 17:01:35 -07:00
Todd Gamblin
c5c9ada7b0 Fix for GitHub #95 
develop: compiler clang@unknown created for /usr/bin/clang-format
https://github.com/scalability-llnl/spack/issues/95
 2015-08-27 02:04:58 -07:00
Todd Gamblin
6f75f5bd6a Merge pull request #88 from trws/git_depth_attempt 
adding a fallback on failure with git --depth
 2015-08-12 23:59:13 -07:00
Todd Gamblin
1792115b4d Use absolute paths to spack compiler wrappers in CC/CXX/F77/FC 2015-08-04 09:57:06 -07:00
Tom Scogland
9174c06598 adding a fallback on failure with git --depth 
Certain remote protocols don't support the `--depth` option.  Since this can't
be checked by URL type or in any sane way locally, this version attempts to
clone git repositories with the --depth option, and if that fails attempts the
clone again without it.
 2015-07-27 14:03:04 -07:00
Todd Gamblin
27ca697b43 Add Python version test to detect {} in version strings. 
- {} is not compatible with Python 2.6
 2015-07-24 14:22:28 -07:00
Todd Gamblin
1e2f421faa Fix Python 2.6 compatibility issue. 2015-07-23 17:01:55 -07:00
Todd Gamblin
19123b4c48 Fix ProviderIndex.update(), which didn't remove stale providers. 2015-07-16 01:41:11 -07:00
Todd Gamblin
e097696390 Update concretize to check for more changes and iterate further. 2015-07-16 01:12:11 -07:00
Todd Gamblin
9087f26537 Fix mangled error message. 2015-07-14 23:59:03 -07:00
Todd Gamblin
0d308ca30f Fix regression of install -j. 2015-07-14 23:45:58 -07:00
Todd Gamblin
9d1f8f6bfd Add test to check packages for Python2.6 compatibility, as well as core. 2015-07-13 18:37:48 +00:00
Florent Pruvost
5acd7cad9a add env. var. in modules: LIBRARY_PATH and PKG_CONFIG_PATH 2015-07-02 02:12:10 -07:00
Todd Gamblin
6892d7189f Merge branch 'features/toggle-build-output' into develop 2015-07-02 00:51:03 -07:00
Todd Gamblin
b3e34be972 Better python template for 'spack create' 2015-07-02 00:39:33 -07:00
Todd Gamblin
edfcac32c3 Fix bug in uninstall (regression in 0fc3b58) 2015-06-20 21:46:52 -07:00
Todd Gamblin
6ed5dd7427 log_output now allows echo to be toggled wtih 'v' key 2015-06-20 20:20:28 -07:00
Todd Gamblin
cfb883646f Fix for git pull --tags when using git 1.7.1 
- Added `ignore_errors` option to `Executable.__call__`
- Can avoid raising errors on *specific* error return values.
 2015-06-13 17:52:00 -07:00
Tom Scogland
0b5ca25358 Fix for repos with many tags 
Ensures all tags are ready before checkout, using `--branch` if possible and
an extra pull if that is not available.  Also adds `--depth 1` to create
shallow clones if the git version is sufficient.

Fixes #64.
 2015-06-13 15:29:55 -07:00
Tom Scogland
277df08676 removing vestigial lines from a previous commit 2015-06-13 14:10:45 -07:00
Tom Scogland
d92ac2a6b2 Small ruby enhancement and tmuxinator package 
It is currently less painful to pull the source from github, compile it into a
gem, then install the gem, than it is to download a gem and install it.  This
still lacks an activation mechanism, but `spack use tmuxinator` is functional.
 2015-06-11 13:51:53 -07:00
Todd Gamblin
0a92349f90 Try a little harder in concretize_version() -- concretize unsafe versions too. 
- This can result in the user being prompted to download an unsafe
  version.

- Avoids overly strict errors when something *could* be satisfiable
  but we don't know about hte version.
 2015-06-07 15:40:01 -07:00
Todd Gamblin
3f3ceb24c4 Add some comments b/c I didn't understand my own test. 2015-06-07 15:39:40 -07:00
Todd Gamblin
0fc3b58890 SPACK-38: Allow specs to be indexed by virtual dependencies. 
- The following now work differently:

      spec['mpi']
      spec['blas']

  This can return a spec for openmpi, mpich, mvapich, etc., EVEN if
  the spec is already concretized.  This means that in a package that
  `depends_on('mpi')`, you can do `spec['mpi']` to see what it was
  concretized to.  This should simplify MPI and BLAS packages.

      'mpi' in spec
      'blas' in spec

  Previously, if the spec had been concretized, these would be `False`
  because there was not a dependency in the DAG with either of these
  names. These will now be `True` even if the spec has been
  concretized.  So, e.g., this will print "YES"

      s = Spec('callpath ^mpich')
      if 'mpi' in spec:
          print "YES"

- Similarly, this will be True:

      Spec('mpich').satisfies('mpi')

- Because of the way virtual dependencies are currently implemented,
  the above required some fiddling around with `package.py` so that it
  would never call `Spec.__contains__` (and result in endless
  recursion).

- This should be fixed by allowing virutal dependnecies to have their
  own package class.
  - This would allow a quicker check for vdeps, without a call to
    `all_packages`.
  - For the time being, `package.py` shouldn't call `__contains__`
 2015-06-07 15:36:53 -07:00
Todd Gamblin
eb9859ce75 Executables now have a useful __str__ function. 2015-06-06 16:15:52 -07:00
Todd Gamblin
53feb12ea0 Cleanup and consolidate error handling 2015-06-06 15:50:01 -07:00
Todd Gamblin
5d7a6c0c46 Add FileFilter convenience class to llnl.util.filesystem. 2015-06-06 15:26:48 -07:00
Saravan Pantham
454d06c25c Removed autosave files from previous commit. 2015-06-06 15:26:37 -07:00
Saravan Pantham
c174fe6199 Fixed BLAS and Lapack installations 2015-06-06 15:26:31 -07:00
Todd Gamblin
d19538af07 Fix #48: Ignore hidden files when deciding how to stage. 
- Expanding archvies like MAGMA 1.6.2 creates extra hidden files that
  confuse Spack's staging mechanism.

- Added a special case to ignore hidden files when checking whether
  the tarball exploded.
 2015-06-01 10:25:58 -07:00
Todd Gamblin
123778dec2 Add -S/--stages option to spack cd/spack location. 
- can now change dir to top-level stage
 2015-06-01 09:56:35 -07:00
Todd Gamblin
16c2588635 Fix #46: make(parallel=False) regression. 
- Added some tests to make sure this stays in place.
 2015-05-31 13:03:30 -07:00
Todd Gamblin
ea7b65e2f2 SPACK-69: spack install now logs build output to install directory. 
- spack install suppresses build output by default.
  - use install -v to show build output on the console too

- package.py uses log_output context to redirect output and log it to a file
  - filters color codes out of output written to file
  - optionally echos to the terminal

- YAML directory layout knows about its build log.
  - can get path to install build log to from directory layout
  - Package.install now copies the build log to $prefix/.spack/build.out

- Error message from failed install execution now includes build log location
 2015-05-29 17:22:33 -07:00
Todd Gamblin
92c21d7134 debug instead of info logging in llnl.util.filesystem 2015-05-29 17:21:30 -07:00
Todd Gamblin
0035100186 SPACK-69: Add context manager to fork and log output in a with block. 2015-05-29 17:20:08 -07:00
Todd Gamblin
9b40d93fc2 Add ability to force color mode even if terminal is NOT a tty 2015-05-29 17:19:03 -07:00
Todd Gamblin
ceecd2ce41 Add ability to test whether tty verbose or debug is enabled. 2015-05-29 17:18:33 -07:00
Todd Gamblin
5676cb0dd1 Add spack find -L to show full hashes. 2015-05-28 17:13:57 -07:00
Todd Gamblin
8cbae642cc Fix bug in spack edit -c 2015-05-28 17:13:23 -07:00
Todd Gamblin
6f8f1bf7af Fix #34: Spack doesn't stop when dep fails to build. 
- Fixes regression introduced by #30
- Child process needs to exit on error
 2015-05-27 20:27:48 -07:00
Todd Gamblin
c622337802 Remove redundancy: convert with closing(open(...)) to with open(...) 2015-05-18 17:11:03 -07:00
Todd Gamblin
f813d823a1 Merge branch 'features/optional-deps' into develop 
This includes:
- Much better variant support (+debug/-debug)
- Optional dependency support (depends_on(... , when='<condition>')
- New config file format (YAML in ~/.spack)
- New Spec format (YAML in $prefix/.spack/spec.yaml)
 2015-05-18 16:16:20 -07:00
Matthew LeGendre
46b91ddf57 YAML config files for compilers and mirrors 2015-05-18 16:01:21 -07:00
Todd Gamblin
09151785b3 SPACK-87: enable disabled git fetch tests. 2015-05-18 11:32:15 -07:00
Todd Gamblin
b2f46c703d Fix SPACK-87: Tag checkout fails for older git versions. 2015-05-18 11:26:32 -07:00
Todd Gamblin
cd1ca36488 SPACK-41: More tests to ensure that constrain() reports changes. 2015-05-12 15:48:57 -07:00
Todd Gamblin
805122c789 SPACK-41: bugfix for nonconvergent normalize() 
- constrain() wasn't reporting changes properly.
 2015-05-12 14:52:46 -07:00
Todd Gamblin
095ff1cb4a Add debug handler to print a stacktrace on Ctrl-C in debug mode. 2015-05-12 14:52:41 -07:00
Todd Gamblin
c44db0133f Fix SPACK-41: Optional deps work with complex condition chains. 2015-05-12 11:45:48 -07:00
Todd Gamblin
cd5fa128c5 Work on SPACK-41: Optional dependencies work for simple conditions. 
- Can depend conditionally based on variant, compiler, arch, deps, etc
  - normalize() is not iterative yet: no chaining depends_ons
  - really need a SAT solver, but iterative will at least handle
    simple cases.

- Added "strict" option to Spec.satisfies()
  - strict checks that ALL of other's constraints are met (not just
    the ones self shares)
  - Consider splitting these out into two methods: could_satisfy() and
    satisfies()
    - didn't do this yet as it would require changing code that uses
      satisfies()

- Changed semantics of __contains__ to use strict satisfaction (SPACK-56)

- Added tests for optional dependencies.

- The constrain() method on Specs, compilers, versions, etc. now
  returns whether the spec changed as a result of the call.
 2015-05-12 09:56:59 -07:00
Todd Gamblin
ef9deeccd1 Merge branch 'features/yaml-spec' into features/optional-deps 2015-05-10 19:28:47 -07:00
Todd Gamblin
09fff39990 Merge remote-tracking branch 'origin/features/variants' into features/optional-deps 2015-05-10 18:59:56 -07:00
Todd Gamblin
13ff1a9bf6 Remove debug print in link_tree 2015-05-10 18:53:09 -07:00
Todd Gamblin
b4a26c496c Better hash output in find. 2015-05-10 18:48:42 -07:00
Todd Gamblin
43e5465592 Fix bug in directory layout hidden files() 2015-05-10 17:56:27 -07:00
Todd Gamblin
3c49487424 Doc tweak. 
- add LLNL release number to new RTD theme.
 2015-05-10 13:11:03 -07:00
Todd Gamblin
25af6478c5 Fix SPACK-67: 'spack help stage' was broken. 
- remove spurious mutually exclusive group from subparser.
 2015-05-10 12:46:33 -07:00
Todd Gamblin
793b842f99 tests for variant concretization 2015-05-10 12:28:25 -07:00
Todd Gamblin
535c1fac87 SPACK-56: fix Variant concretization. 
- Variant concretization is tricky:

  - During concretization, a spec without variants (e.g., mpich) means
    "don't care".  So, Spec('mpich').satisfies('mpich+debug') is true
    because it *could* still be built that way.

  - After concretization, a spec without a particular variant means
    "don't know", as that wasn't part of the spec, so the opposite
    relationship is true.  Assume 'spec' is already installed:

      spec.satisfies('mpich+debug')

    this is false beacuse the `debug` variant didn't exist when spec
    was built, so we can't satisfy the explicit request for +debug.
 2015-05-10 12:25:07 -07:00
Todd Gamblin
3b1898b8e4 Fix SPACK-40: Finish adding variant directive. 
- Variants are now declarable in packages using the variant() directive.
- Variants are checked - you can't just ask for a random variant, it has to be declared.
- conditional logic (@when, if, '+debug' in spec, etc.) still required in package to
  implement variant.
 2015-05-10 12:24:03 -07:00
Todd Gamblin
c105a8d42a Small updates to directives. 2015-05-10 12:24:03 -07:00
Todd Gamblin
1f8ce403dc Modularize directives. Now each directive specifies its storage. 2015-05-10 12:24:03 -07:00
Todd Gamblin
0944ba120c relations are now "directives", and code is cleaned up. 2015-05-10 12:24:03 -07:00
Todd Gamblin
5d2ee893c4 Remove TODOs for full DAG information. 
- specs on disk now include full DAG info
- no need for normalize() kludges() anymore.
 2015-05-10 11:45:12 -07:00
Todd Gamblin
29e833dfef extensions file now in YAML format 2015-05-10 02:56:50 -07:00
Todd Gamblin
2f3b0481de YamlDirectoryLayout now working. 2015-05-09 16:35:02 -05:00
Todd Gamblin
9412fc8083 restore some disabled git tests. 2015-05-09 16:12:04 -05:00
Todd Gamblin
8e87b2176a Updated Sphinx RTD documentation theme supports 4 levels 2015-05-09 13:35:05 -05:00
Todd Gamblin
d6a5266976 Fix 'ç' in François's name. 2015-05-09 13:30:09 -05:00
François Bissey
3cfbc0520a Basic support for IBM XL compilers 2015-05-07 01:54:18 -05:00
Todd Gamblin
42c88aa3ca Merge branch 'features/diy' into develop 2015-05-07 01:53:26 -05:00
Todd Gamblin
1d0975bac6 Bugfixes for yaml specs. 2015-05-05 14:24:46 -07:00
Todd Gamblin
d687962b74 Add test for YAML specs. 2015-05-05 13:18:44 -07:00
Todd Gamblin
53e8e44a8b Make YAML specs more human readable. 2015-05-05 13:06:41 -07:00
Todd Gamblin
278e70e533 Specs to/from YAML are working. 2015-04-29 01:47:09 -07:00
Todd Gamblin
13132c6b97 Add YAML to Spack. 2015-04-28 23:15:13 -07:00
Todd Gamblin
5c04b3c480 Fix for GitHub #30 and SPACK-70. 2015-04-14 15:11:41 -07:00
Todd Gamblin
8b14a46201 documentation updates 2015-04-14 15:11:01 -07:00
Todd Gamblin
314120212d Complete diy command. 2015-04-08 00:22:46 -07:00
Todd Gamblin
5077a2a343 Add a DIY stage class. 2015-04-08 00:22:34 -07:00
Todd Gamblin
ab40d0b1a4 Factor edit_package function out of edit command. 2015-04-08 00:22:07 -07:00
Todd Gamblin
c4a6d04131 Start of DIY command. 2015-04-08 00:20:53 -07:00
Todd Gamblin
203fd861aa Allow spack install -j to throttle make jobs. 2015-04-07 22:21:19 -07:00
Todd Gamblin
ad62b93df9 Merge pull request #23 from mplegendre/rpath_cleanup 
Only convert -L<path> to -Wl,-rpath,<path> in compiler scripts if <path>...
 2015-03-27 14:14:49 -07:00
Matthew LeGendre
a4cce9eb69 Only convert -L<path> to -Wl,-rpath,<path> in compiler scripts if <path> points into the spack install area 
This specifically fixes problems with building gcc, as build and system directories were turning in in gcc library rpaths.
 2015-03-27 13:58:57 -07:00
Todd Gamblin
8364f0404c Add some options to spec command. 2015-03-24 08:40:45 -07:00
Todd Gamblin
af92250c7e Add google analytics to docs. 2015-03-15 00:08:58 -07:00
Todd Gamblin
f97966d63a SPACK-18: simpler build error messages 
Suppress python stack trace on build error UNLESS in debug mode (spack -d).
Now spack shows errors with a single red arrow, and it's easier to find the actual build output.
 2015-03-12 23:50:07 -07:00
Todd Gamblin
132aa690d8 Remove superfluous env scripts (avoid specifically named ones). 2015-03-12 10:39:26 -07:00
Todd Gamblin
560f2c299a Add install_tree, force_symlink helper functions. 2015-03-12 10:32:29 -07:00
Todd Gamblin
0394adcf8d Minor doc tweak. 2015-02-25 10:41:12 -08:00
Todd Gamblin
5eb7e46654 Spell check docs 2015-02-24 10:26:26 -08:00
Todd Gamblin
447e295947 SPACK-62: fix for site docs. 2015-02-24 02:45:21 -08:00
Todd Gamblin
daa38d2ff4 SPACK-59: Documentation updates, bugfix in fetching. 2015-02-24 02:45:07 -08:00
Todd Gamblin
049808a34f Merge remote-tracking branch 'origin/features/SPACK-46' into develop 
Conflicts:
	lib/spack/docs/packaging_guide.rst
 2015-02-23 10:46:58 -08:00
Todd Gamblin
daef78f538 Update packaging documentataion. 2015-02-23 10:31:22 -08:00
Todd Gamblin
5699cbb597 Fix SPACK-60: 0.8.15 basic docs. 2015-02-23 01:23:30 -08:00
Todd Gamblin
6dab133d9f Same package add icon on mac and linux. 2015-02-23 01:23:30 -08:00
Todd Gamblin
d49c98188a Add an override to colify so we can set terminal dimensions. 2015-02-23 01:23:30 -08:00
Todd Gamblin
02e316e772 Convert ValueErrors to SpackError subclass. 2015-02-18 16:45:54 -08:00
Todd Gamblin
2374eb4dca Fix for SPACK-62 
- deactivate -a errors if arg is not activated
- deactivate -af does not.
 2015-02-18 16:45:12 -08:00
Todd Gamblin
2eda01c703 uninstall -f ignores nonexisting packages. 2015-02-18 16:21:15 -08:00
Todd Gamblin
2755171e08 Update documentation to reflect new restage/clean behavior. 2015-02-18 14:46:00 -08:00
Todd Gamblin
e67655c31a docs autodetect version. 2015-02-18 14:33:21 -08:00
Todd Gamblin
c7b8a4e25c Fix for SPACK-46: cleanup spack clean, spack restage. 2015-02-18 14:00:37 -08:00
Todd Gamblin
14097e39cc Suppress download status meter when routing I/O to a file. 2015-02-18 10:59:03 -08:00