Commit graph

11677 commits

Author SHA1 Message Date
iarspider
2de0053c08
New package: hepmcanalysis (#17296)
* [WIP] Add hepmcanalysis package

* Implement install() for hepmcanalysis

* Flake-8

Co-authored-by: iarspider <iarpsider@gmail.com>
2020-06-29 21:35:25 -05:00
Amjad Kotobi
17985959a4
R: new versions (#17297) 2020-06-29 21:33:57 -05:00
Adam J. Stewart
c8e2529eae
GDAL: add v3.1.1 (#17302) 2020-06-29 21:26:49 -05:00
h-denpo
17fa1edf32
Some files could not be created due to errors, which have been fixed. (#17250)
added support for Fujitsu compiler.
2020-06-29 21:26:26 -05:00
Fabien Bruneval
6f824b598c
cp2k: variant tuning lmax was broken (#17266)
* cp2k: variant tuning `lmax` was broken

- `spack install cp2k lmax=6` now works

* Update var/spack/repos/builtin/packages/cp2k/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/cp2k/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/cp2k/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/cp2k/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/cp2k/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/cp2k/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-06-29 21:24:25 -05:00
Fabian Brandt
4a10faff87
New package py-networkit (6.1, 7.0) (#17195) 2020-06-29 21:23:53 -05:00
iarspider
49f19e1710
New package: coin3d (#17251)
* New package: coin3d

* Update package.py

* Flake-8

* Update var/spack/repos/builtin/packages/coin3d/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Add link-time dependencies

* Add configure flags for boost; remove version 4.0.0 (doesn't compile)

Co-authored-by: iarspider <iarpsider@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-06-29 21:23:02 -05:00
darmac
7161b33364
nfs-utils: fix compile error on debian (#17292)
use pkgconfig to detect libtirpc
2020-06-29 15:18:51 +02:00
iarspider
01357d4925
New package: fjcontrib + new variants for fastjet (#17255)
* New package: fjcontrib + new variants for fastjet

* Flake-8

* Flake-8 once more

* Update package.py

* Allow choosing which plugins to build

Build all plugins by default.

* Flake-8

* Always build all plugins

* Update package.py

Co-authored-by: iarspider <iarpsider@gmail.com>
2020-06-29 09:46:44 +01:00
Kshitij Mehta
d27ea3be1c
codar-cheetah: added v1.1.0 and v1.0.0 (#17286) 2020-06-29 08:10:30 +02:00
Wouter Deconinck
4ea4c2e63f
geant4: depends on "qt@5: +opengl" when +qt (#17264)
The Geant4 cmake check requires Qt5OpenGL_FOUND, so we must require
the Qt5 +opengl variant. If not, the cmake phase fall through to Qt4
and fails due to a missing Qt4::QtGui target.

In Geant4InterfaceOptions.cmake:
```
  if(Qt5Core_FOUND
      AND Qt5Gui_FOUND
      AND Qt5Widgets_FOUND
      AND Qt5OpenGL_FOUND
      AND Qt5PrintSupport_FOUND)
```

Ref: https://github.com/Geant4/geant4/blob/master/cmake/Modules/Geant4InterfaceOptions.cmake#L90
(5baee230e93612916bcea11ebf822756cfa7282c, Import Geant4 10.6.0 source tree)
2020-06-29 08:09:29 +02:00
Tomoki, Karatsu
4425e83750
fujitsu-mpi: added "headers" and "libs" methods (#17253) 2020-06-29 08:06:09 +02:00
Seth R. Johnson
56db9647b1
Prevent libffi 3.3 from adding contradictory tuning flags (#17285)
Fixes #17187
2020-06-28 13:31:59 -05:00
Sinan
9a8e9f265e
package/qgis: add new versions (#17284)
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-06-28 13:30:58 -05:00
Amjad Kotobi
02d5b8c425
intel: added new versions (#17287) 2020-06-28 13:30:21 -05:00
Dr. Christian Tacke
7aac150617
vmc: New Package (#17282)
"""The Virtual Monte Carlo (VMC) library"""
2020-06-28 13:28:42 -05:00
darmac
68633fac5c
redis: add config file from source code (#17225)
* redis: add config file from source code

* Update var/spack/repos/builtin/packages/redis/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-06-28 13:26:04 -05:00
Axel Huebl
064618e1ea
WarpX: Development Branch (#17163)
* WarpX: Development Branch

Update the name of our development branch.

* WarpX version: develop keyword

development is not a "newest"-like keyword, but `master`/`develop`/`dev` are.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Renamed: develop version

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-06-28 01:23:11 -07:00
Greg Becker
cc28493449
make gcc build on aarch64 (#17280) 2020-06-27 18:51:11 -05:00
Axel Huebl
d7c46d8c57
CUDA: CUDAHOSTCXX Env (#16869)
This is a general CMake CUDA language hint to use the CXX
compiler has host compiler for NVCC. Seems like a good
default since we do not express the CUDA compiler in Spack
otherwise yet (e.g. no `self.compiler.cuda` or
`self.compiler.cudahostcxx`).
2020-06-27 15:36:18 -05:00
Dr. Christian Tacke
f7aecd9d6e
perl-date-manip: New Package Date::Manip (#17259) 2020-06-27 14:54:50 -05:00
vvolkl
0ddfcf097b
[gaudi] new version, cleanup (#17268) 2020-06-27 14:42:23 -05:00
Fabian Brandt
a640befb60
Patch needed also for version 7.0 (#17269) 2020-06-27 14:41:24 -05:00
Hans Pabst
1345d30750
LIBXSMM 1.16.1 (#17274) 2020-06-27 14:39:35 -05:00
albestro
81b4c03f56
migrate to git and update commit (#17276) 2020-06-27 14:39:01 -05:00
David Gardner
00fd63f5ee
superlu-mt: add pic and int64 variants (#11361)
* add pic and int64 variants

* update to Language-specific PIC flags
2020-06-27 09:52:32 -05:00
Adam J. Stewart
c8e6a9e535
Fix super invocation in Intel packages (#17248) 2020-06-26 14:04:35 -05:00
Adam J. Stewart
cecd300693
py-azureml-sdk: add new package (and deps) (#17261) 2020-06-25 20:15:21 -05:00
Axel Huebl
e6bf0b01c4
Ascent & Conduit: ~python default (#17230)
* Ascent: ~python default

Packages that build optional python bindings do not build them by default in Spack:
https://spack.readthedocs.io/en/latest/packaging_guide.html#variant-names

This reduces long dependency trees and build times, e.g. for apps just using C/C++/Fortran bindings of a library.

* Conduit: ~python default

Packages that build optional python bindings do not build them by
default in Spack:
  https://spack.readthedocs.io/en/latest/packaging_guide.html#variant-names

This reduces long dependency trees and build times, e.g. for apps
just using C/C++/Fortran bindings of a library.
2020-06-25 20:14:57 -05:00
Dr. Christian Tacke
49b0ac804b
munge: Update homepage URL (#17257) 2020-06-25 22:33:38 +02:00
Ge Wenjun
740a9d88f9
add new package: datatransferkit (#17158)
* add new package: datatransferkit

* fix style

* remove the build type;add~dtk;'shared' variant;homepage

* add maintainer
2020-06-25 14:57:31 -05:00
manifest
d2b56dbce3
add sra-toolkit@2.10.7 (#16947)
* sra-tools

* sra-tools style fix

* sratoolkit version update
2020-06-25 14:33:26 -05:00
Michael Kuhn
e8465ce81c
libtirpc: Add 1.2.6 (#17209)
Earlier versions do not compile with gcc@10:.
2020-06-25 14:32:34 -05:00
Andrey Prokopenko
9f3e542d30
Update ArborX for new Kokkos (#17213)
* Update ArborX for new Kokkos

* Set maintainer
2020-06-25 14:20:31 -05:00
Greg Becker
096bd69a94
prevent multiple version sigils in the same spec (#17246)
* prevent multiple version sigils in the same spec

* fix packages with malformed versions
2020-06-25 12:34:09 -05:00
Erik Schnetter
e04c89f086
mpich: Allow building with external hwloc library (#15305)
This is in principle supported already, but requires a patch to avoid build errors.

Closes #15302

Co-authored-by: Michael Kuhn <michael.kuhn@informatik.uni-hamburg.de>
2020-06-25 18:27:48 +02:00
Massimiliano Culpo
14599f09be
Separate Apple Clang from LLVM Clang (#17110)
* Separate Apple Clang from LLVM Clang

Apple Clang is a compiler of its own. All places
referring to "-apple" suffix have been updated.

* Hack to use a dash in 'apple-clang'

To be able to use autodoc from Sphinx we need
a valid Python name for the module that contains
Apple's Clang code.

* Updated packages to account for the existence of apple-clang

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Added unit test for XCode related functions

Co-authored-by: Gregory Becker <becker33@llnl.gov>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-06-25 11:18:48 -05:00
manifest
5c712a03a1
msmc2: added package at v2.1.2 (#17170)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-06-25 10:43:33 +02:00
Brian Van Essen
089a21dd1d
Update the version of Cereal. (#17244) 2020-06-24 23:00:06 -05:00
John Jolly
d8a7cfc36a
chill: Patch to include gmp, isl, and libquadmath (#16996)
The rose library uses the `strtoflt128` and `quadmath_snprintf`
functions. In order to successfully link the rose library, chill must
also link the GCC libquadmath library to resolve the two functions. This
patch changes the chill build to include this library.

Chill will also not compile unless headers from the gmp and isl
libraries are found in the includes path. Two patches - one each for gmp
and isl - modify the chill build process to add options to specify those
paths. These options follow the similar pattern as seen with BOOSTHOME
and ROSEHOME options which already exist in the chill build process.

Because of the addition of GMPHOME and ISLHOME options, build
requirements for gmp and isl are also added.
2020-06-24 22:53:09 -05:00
Tomoki, Karatsu
b2a4af764c
vtk: Add patch for finding Fujitsu-MPI wrapper commands. (#17069) 2020-06-24 22:52:31 -05:00
Michael Kuhn
cee24fbc98
mvapich2: Fix build with gcc@10: (#17114) 2020-06-24 22:49:30 -05:00
Sergey Kosukhin
8d67279181
openjdk and jdk: extend the list of provided versions of java (#17151) 2020-06-24 22:43:30 -05:00
vvolkl
b8270559d9
[podio] patch to correctly load dictionaries in v00-10 (#17157) 2020-06-24 22:42:41 -05:00
Jen Herting
fe14c201dc
New package: py-mmtf-python (#17201)
* mdanalysis

* [py-mmtf-python] fixed copyright

Co-authored-by: Andrew Elble <aweits@rit.edu>
2020-06-24 22:24:16 -05:00
oracleLee
e81533eb9b
Update a supported package 'user-meamc' for lammps (#17207)
* Update package.py

* edit confliction when add package 'meam' 

 The USER-MEAMC fully replaces the MEAM package, which has been removed from LAMMPS after the 12 December 2018 version.
2020-06-24 22:23:17 -05:00
cedricchevalier19
a928f44fc0
Fix missing dependency in Mono (#17208)
* Add missing dependency on Python for Mono.

At build time

* Adding version 6.8.0.123 for mono
2020-06-24 22:22:40 -05:00
Cyrus Harrison
eee56295ce
add cond py-mpi4py dep to conduit (#17211) 2020-06-24 22:19:28 -05:00
Chuck Atkins
30958649fb
ecp-io-sdk: remove deprecated numa variant from unify-fs (#17212) 2020-06-24 22:18:49 -05:00
Glenn Johnson
7717532d14
The lapack-0.3.9-xerbl patch is no longer needed (#17217)
The lapack-0.3.9-xerbl patch is not needed for versions 0.3.10 and
above.
2020-06-24 22:12:48 -05:00