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Author SHA1 Message Date
alalazo
88f2a1d43a Merge remote-tracking branch 'scitas/packages/mumps' into packages/elpa 2016-01-21 08:34:44 +01:00
alalazo
a8132470e4 Merge branch 'develop' into packages/elpa 2016-01-21 08:33:59 +01:00
Nicolas Richart
b71b478a36 Minor correction to install mumps+mpi 2016-01-20 18:31:02 +01:00
alalazo
19caac69d8 openmpi : turned torque support into a variant (default false) 
hdf5 : fixed a few bugs, removed suspicious macro deinition, etc.
 2016-01-20 15:22:49 +01:00
Nicolas Richart
974fc65e0f renaming packages to follow changes on develop 2016-01-20 14:38:55 +01:00
Nicolas Richart
65f65ec4e4 Adding MUMPS and ScaLAPACK 2016-01-20 14:21:44 +01:00
alalazo
ab27fdc692 elpa : commit partial package. Blocked by missing scalapack 2016-01-20 09:35:15 +01:00
Peter Scheibel
965af75d23 Merge branch 'develop' into features/boost-additive-libs 2016-01-19 17:27:18 -08:00
Adam J. Stewart
98706d31dc Various updates to MVAPICH2 package 
Use url_for_version function to specify urls
Add version 2.2b
Add dedicated MRAIL variant
Fix typo
Make fortran compiler flags more specific
 2016-01-19 12:46:15 -06:00
Todd Gamblin
9be37da077 Merge pull request #373 from adamjstewart/features/mpich 
Add verbs variant, remove deprecated configure flags
 2016-01-19 08:59:59 -08:00
alalazo
e121faffa1 eigen : added package 2016-01-19 17:26:26 +01:00
Adam J. Stewart
0d42cdaffd Merge branch 'develop' into features/hdf 2016-01-19 10:09:25 -06:00
Adam J. Stewart
530f8e5b26 Merge branch 'develop' into features/hdf 
* develop: (85 commits)
  Make libxcb compile with gcc 4.9.
  disable parallel install for glib (found races)
  disable cairo-trace, which is incompatible with older libiberty.h.
  Fix LaunchMon on newer gcc versions.
  Simplify output redirection in spack.util.executable
  Allow completely empty config files.
  Update cmake package to use http in all URLs.
  Fix create, diy, edit, and repo commands to use multiple repos.
  Add namespace option to find command.
  Temporary fix: Clang is the default compiler on Mac OS X.
  Netcdf requires cmake >=2.8.12
  Mbedtls depends on cmake
  Update libtool to 2.4.6
  Update Julia to 0.4.3
  Make binutils build on OS X
  Add verbs and psm variants
  py-matplotlib: depend on freetype
  py-numpy: make blas/lapack optional dependencies
  qhull: apply patch to work with libc++'s standard library
  New package GNU tar
  ...
 2016-01-19 10:07:21 -06:00
Adam J. Stewart
fbab88b0e1 Merge branch 'develop' into features/xz 
* develop: (85 commits)
  Make libxcb compile with gcc 4.9.
  disable parallel install for glib (found races)
  disable cairo-trace, which is incompatible with older libiberty.h.
  Fix LaunchMon on newer gcc versions.
  Simplify output redirection in spack.util.executable
  Allow completely empty config files.
  Update cmake package to use http in all URLs.
  Fix create, diy, edit, and repo commands to use multiple repos.
  Add namespace option to find command.
  Temporary fix: Clang is the default compiler on Mac OS X.
  Netcdf requires cmake >=2.8.12
  Mbedtls depends on cmake
  Update libtool to 2.4.6
  Update Julia to 0.4.3
  Make binutils build on OS X
  Add verbs and psm variants
  py-matplotlib: depend on freetype
  py-numpy: make blas/lapack optional dependencies
  qhull: apply patch to work with libc++'s standard library
  New package GNU tar
  ...
 2016-01-19 10:05:50 -06:00
Adam J. Stewart
58f18d5b12 Merge branch 'develop' into features/hwloc 
* develop: (85 commits)
  Make libxcb compile with gcc 4.9.
  disable parallel install for glib (found races)
  disable cairo-trace, which is incompatible with older libiberty.h.
  Fix LaunchMon on newer gcc versions.
  Simplify output redirection in spack.util.executable
  Allow completely empty config files.
  Update cmake package to use http in all URLs.
  Fix create, diy, edit, and repo commands to use multiple repos.
  Add namespace option to find command.
  Temporary fix: Clang is the default compiler on Mac OS X.
  Netcdf requires cmake >=2.8.12
  Mbedtls depends on cmake
  Update libtool to 2.4.6
  Update Julia to 0.4.3
  Make binutils build on OS X
  Add verbs and psm variants
  py-matplotlib: depend on freetype
  py-numpy: make blas/lapack optional dependencies
  qhull: apply patch to work with libc++'s standard library
  New package GNU tar
  ...
 2016-01-19 10:01:42 -06:00
Adam J. Stewart
d20ca32440 Merge branch 'develop' into features/mpc 
* develop: (85 commits)
  Make libxcb compile with gcc 4.9.
  disable parallel install for glib (found races)
  disable cairo-trace, which is incompatible with older libiberty.h.
  Fix LaunchMon on newer gcc versions.
  Simplify output redirection in spack.util.executable
  Allow completely empty config files.
  Update cmake package to use http in all URLs.
  Fix create, diy, edit, and repo commands to use multiple repos.
  Add namespace option to find command.
  Temporary fix: Clang is the default compiler on Mac OS X.
  Netcdf requires cmake >=2.8.12
  Mbedtls depends on cmake
  Update libtool to 2.4.6
  Update Julia to 0.4.3
  Make binutils build on OS X
  Add verbs and psm variants
  py-matplotlib: depend on freetype
  py-numpy: make blas/lapack optional dependencies
  qhull: apply patch to work with libc++'s standard library
  New package GNU tar
  ...
 2016-01-19 09:58:07 -06:00
Adam J. Stewart
f48fc0d8b1 Revert deprecated configure flags 2016-01-19 09:43:28 -06:00
Adam J. Stewart
16f1267c29 Merge branch 'develop' into features/mpich 
* develop: (43 commits)
  Make libxcb compile with gcc 4.9.
  disable parallel install for glib (found races)
  disable cairo-trace, which is incompatible with older libiberty.h.
  Fix LaunchMon on newer gcc versions.
  Simplify output redirection in spack.util.executable
  Allow completely empty config files.
  Fix create, diy, edit, and repo commands to use multiple repos.
  Add namespace option to find command.
  Temporary fix: Clang is the default compiler on Mac OS X.
  update compiler config test.
  add sanity check on config write as well as validation on read.
  Add jsonschema validation for config files.
  Make text wrapping off by default in tty, add a kwarg for it.
  add/remove/list working for new config format.
  Add Python 3 aliases to our argparse backport.
  All tests that call concretize() need to be MockPackagesTests.
  Fix bug in tests.
  Rework mirror configuration.
  Rework compiler configuration and simplify config.py logic.
  Remove mock_configs; tests no longer modify spack home directory.
  ...
 2016-01-19 09:37:53 -06:00
Todd Gamblin
01c5b53ba1 Make libxcb compile with gcc 4.9. 2016-01-19 01:16:15 -08:00
Todd Gamblin
047f1b9de9 disable parallel install for glib (found races) 2016-01-19 01:16:15 -08:00
Todd Gamblin
b7b4faff96 disable cairo-trace, which is incompatible with older libiberty.h. 2016-01-19 01:16:14 -08:00
Todd Gamblin
67ea7ce0ab Fix LaunchMon on newer gcc versions. 2016-01-19 01:16:14 -08:00
Todd Gamblin
8d6342c53d Merge branch 'mplegendre-multi_pkgsrc_roots' into develop 
- This moves var/spack/packages to var/spack/repos/builtin/packages.

- Packages that did not exist in the source branch, or were changed in
  develop, were moved into var/spack/repos/builtin/packages as part of
  the integration.

Conflicts:
	lib/spack/spack/test/unit_install.py
	var/spack/repos/builtin/packages/clang/package.py
 2016-01-19 01:16:08 -08:00
Adam J. Stewart
58162ec170 Add verbs variant, remove deprecated configure flags 2016-01-18 16:03:41 -06:00
Todd Gamblin
d802165e03 Merge pull request #355 from eschnett/eschnett/llvm 
LLVM depends on cmake, and does not depend on isl
 2016-01-17 19:24:17 -08:00
Todd Gamblin
4bab6f9fdb Update cmake package to use http in all URLs. 2016-01-17 18:55:36 -08:00
Todd Gamblin
afcd5420ee Merge pull request #356 from eschnett/eschnett/tar 
New package GNU tar
 2016-01-17 18:49:14 -08:00
Todd Gamblin
85e8f8eb6a Merge pull request #353 from eschnett/eschnett/ncurses 
Install ncurses properly
 2016-01-17 18:49:00 -08:00
Todd Gamblin
635e053e6d Merge pull request #358 from adamjstewart/features/openmpi 
Add psm and verbs variants
 2016-01-17 18:45:13 -08:00
Todd Gamblin
77c6038711 Merge pull request #370 from eschnett/eschnett/netcdf-cmake 
Netcdf requires cmake >=2.8.12
 2016-01-17 18:31:56 -08:00
Todd Gamblin
a473830533 Merge pull request #367 from eschnett/eschnett/mbedtls-cmake 
Mbedtls depends on cmake
 2016-01-17 18:26:07 -08:00
Todd Gamblin
99390be127 Merge pull request #366 from eschnett/eschnett/libtool-2.4.6 
Update libtool to 2.4.6
 2016-01-17 18:25:55 -08:00
Todd Gamblin
c20f8eb5b3 Merge pull request #365 from eschnett/eschnett/julia-0.4.3 
Update Julia to 0.4.3
 2016-01-17 18:25:45 -08:00
Todd Gamblin
1a145f68a7 Merge pull request #362 from eschnett/eschnett/binutils-osx 
Make binutils build on OS X
 2016-01-17 18:25:24 -08:00
Erik Schnetter
81f1311a60 Netcdf requires cmake >=2.8.12 2016-01-17 14:57:08 -08:00
Erik Schnetter
f4b87e2967 Mbedtls depends on cmake 2016-01-17 11:05:15 -05:00
Erik Schnetter
60656b6255 Update libtool to 2.4.6 2016-01-17 11:03:40 -05:00
Erik Schnetter
e585a5d8a3 Update Julia to 0.4.3 2016-01-17 11:02:30 -05:00
Erik Schnetter
981cefe8d3 Make Boost build with MPI on OS X 
Boost does not build on OS X with either gold or binutils. The gold linker does not exist on Darwin, and binutils on Darwin provides an assembler that doesn't work for Boost.

- Introduce a variant that specifies whether to build with binutils, defaulting to true for backward compatibility
- Auto-detect whether we build on Darwin; in this case, set the gold and binutils variant defaults to false
- Clean up configure flags for as and ld
 2016-01-17 10:54:12 -05:00
Erik Schnetter
36a428b8fc Make binutils build on OS X 
Binutils defines several global variables multiple times. Apparently this works fine under Linux, but it leads to a linker error on Darwin. Rename these global variables.

Note that binutils on OS X is still not really useful, as important tools (e.g. ld) are not supported.
 2016-01-17 10:49:13 -05:00
Peter Scheibel
d22cf1aed1 1. raise an exception if the multithreaded and singlethreaded options are both 
disabled
2. invoke the b2 installation once for each enabled threading option (apparently
the install fails if a single call has both options enabled for mpi)
 2016-01-15 18:07:41 -08:00
Adam J. Stewart
eac795abc3 Add verbs and psm variants 2016-01-15 15:09:36 -06:00
Ben Boeckel
4f60948bff py-matplotlib: depend on freetype 
Probably a missed dependency, but appeared on OS X.
 2016-01-15 16:04:49 -05:00
Ben Boeckel
c3bf1a7741 py-numpy: make blas/lapack optional dependencies 
OS X is having trouble building these libraries, so make them optional
dependencies.
 2016-01-15 16:03:51 -05:00
Ben Boeckel
f6680a0051 qhull: apply patch to work with libc++'s standard library 
Only seen on OS X with clang right now.
 2016-01-15 16:02:35 -05:00
Nicola Varini
7fc308ed26 Update to version 5.3 2016-01-15 17:04:25 +01:00
Nicola Varini
7d0256c9fb Quantum-ESPRESSO package 2016-01-15 10:27:38 +01:00
Erik Schnetter
0a993cd9d7 New package GNU tar 2016-01-14 20:44:51 -05:00
Erik Schnetter
3e703cc281 LLVM depends on cmake, and does not depend on isl 
Add cmake requirement.

Remove gmp and isl requirements. Using an external isl leads to a build failure for me on a fairly standard Fedora Linux workstation. The Spack package file says that isl is required for polly, however, the polly documentation states that as of LLVM 3.7, polly includes isl, and has no external dependencies any more.
 2016-01-14 17:52:28 -05:00
Erik Schnetter
aa3897a880 Install ncurses properly 
Currently, ncurses's include files are installed into two separate subdirectories, "install/ncurses" and "install/ncursesw". The second level of subdirectories ("ncurses" and "ncursesw") are non-standard. I checked several systems to confirm this, and ncurses examples on the web also simply contain "#include <ncurses.h>" instead of "#include <ncurses/ncurses.h>", which would be necessary to use the currently installed ncurses packages. For example, this also breaks llvm, which uses ncurses, but does not expect the second level of subdirectories.

I am now using the option "--enable-overwrite", which installs the header files directly in to ".../include". I also enable "widec" support all the time. These options are e.g. similar to the ones used by MacPorts, and I confirm that they make the llvm package build (which didn't build before).
 2016-01-14 17:40:11 -05:00
Todd Gamblin
1268b41570 Merge pull request #293 from trws/llvm-rework 
Llvm rework
 2016-01-14 01:13:39 -08:00
Todd Gamblin
93fdb06d7d Merge pull request #273 from epfl-scitas/packages/R 
R : updated package
 2016-01-14 00:13:27 -08:00
Adam J. Stewart
244ee673d6 Add latest version 2016-01-13 11:44:51 -06:00
Todd Gamblin
a56575a6d2 Merge pull request #324 from eschnett/eschnett/openblas-lapack 
Ensure that OpenBLAS provides a file liblapack.a
 2016-01-13 08:26:26 -08:00
Erik Schnetter
aa1f96c73b New package "cereal" 2016-01-13 11:21:52 -05:00
alalazo
78b57787fa gmsh : added hdf5 support 2016-01-13 12:22:59 +01:00
alalazo
767f286a9f gmsh : added fltk support 2016-01-13 11:26:10 +01:00
alalazo
ffaa4a8922 gmsh : added package with basic compile options 2016-01-13 10:05:19 +01:00
Todd Gamblin
8ead7783ab Merge pull request #345 from eschnett/eschnett/petsc-python-2 
Correct Python version constraint syntax
 2016-01-12 14:26:28 -08:00
Erik Schnetter
8eb16ba02d Merge branch 'develop' into eschnett/petsc-python-2 
# Conflicts:
#	var/spack/packages/petsc/package.py
 2016-01-12 14:36:37 -05:00
Adam J. Stewart
a6f2cc9cbf Add required dependency version 2016-01-12 13:28:48 -06:00
Adam J. Stewart
180c673c78 Add different URL for older source code 2016-01-12 13:21:53 -06:00
Adam J. Stewart
6985d2c914 Add url_for_version function to calculate url 2016-01-12 13:00:05 -06:00
Adam J. Stewart
5520ce3c4a Removed unnecessary URLs 2016-01-12 12:19:03 -06:00
Adam J. Stewart
9b3e0255f4 Add HDF package 2016-01-12 11:55:42 -06:00
Todd Gamblin
4ac530d289 Merge pull request #314 from eschnett/eschnett/libpciaccess-configure 
Build libpciaccess from tarball
 2016-01-12 09:14:19 -08:00
Todd Gamblin
5bdc6e53e5 Merge pull request #323 from eschnett/eschnett/openssl-apps 
Ensure the APPS environment variable is not set when building OpenSSL
 2016-01-12 09:13:50 -08:00
Todd Gamblin
dd0aa90aa1 Merge pull request #328 from eschnett/eschnett/lua-readline 
Resolve readline/ncurses dependency when building Lua
 2016-01-12 09:13:21 -08:00
Todd Gamblin
1a3c0063a5 Merge pull request #329 from epfl-scitas/packages/cmake 
cmake : added variant that activates the build of the ncurses gui
 2016-01-12 09:12:06 -08:00
alalazo
1f78b9c7af parmetis : removed leftover import statement 2016-01-12 16:59:47 +01:00
alalazo
da8b08b5fe parmetis : used spack install method instead of shutil.copy 2016-01-12 14:55:29 +01:00
alalazo
30da85c3d8 metis : added variant specified in BUILD.txt. Fixed wrong dependency on MPI. 
parmetis : added variants as in metis
 2016-01-12 14:25:06 +01:00
Peter Scheibel
50727527bc This commit makes the following changes: 
There are two sensible defaults for building boost libraries: build all of them
or build none of them. Previously the Spack boost package took the first
approach. This commit changes to building no libraries by default. The user can
specify which libraries they need using variants (e.g. +iostreams to compile the
boost iostreams library). If no libraries are built then a header-only install
is performed (no compilation, just copy header files to prefix). The consequence
of this change is that packages which specify a dependency on boost may now fail
(until they are updated to specify exactly which boost libraries they need
compiled).

The user may now specify whether to build shared libraries (static libraries are
always built) and whether to build libraries with/out multi-threading support
(default is to only build with multi-threading support).

The executable on the user-config.jam toolset line is set to Spack's cc script.
Before, without this, the desired toolset was used but Spack deferred to the
boost build system to choose the compiler version.

bzip2 and zlib are always specified as dependencies when iostreams is built
(before this could be controlled with the +compression variant).
 2016-01-11 15:51:59 -08:00
Erik Schnetter
36d74d2a97 Correct Python version constraint syntax 2016-01-11 17:39:39 -05:00
Erik Schnetter
a5588e4bb7 Download package version with a configure script 
This avoids having to use autoconf, which requires many m4 scripts that are not always available.
 2016-01-11 17:37:13 -05:00
Erik Schnetter
8af8c10559 Avoid key error when env var is unset 2016-01-11 17:33:44 -05:00
Todd Gamblin
85220dd77d Revert "Require Python for PETSc" 2016-01-11 13:57:21 -08:00
Todd Gamblin
01f2c38ee7 Merge pull request #320 from eschnett/eschnett/parmetis-cmake 
parmetis requires cmake @2.8:
 2016-01-11 13:56:28 -08:00
Todd Gamblin
25e398645f Merge pull request #321 from eschnett/eschnett/petsc-python 
Require Python for PETSc
 2016-01-11 13:56:10 -08:00
Todd Gamblin
c4f2373ac2 Merge pull request #318 from eschnett/eschnett/metis-cmake 
Require cmake @2.8: for metis
 2016-01-11 13:56:04 -08:00
Todd Gamblin
d2b925c709 Merge pull request #312 from eschnett/eschnett/petsc-mpi 
Make PETSc build with OpenMPI
 2016-01-11 13:53:51 -08:00
Todd Gamblin
87e8430921 Merge pull request #316 from eschnett/eschnett/tgz 
Use .tar.gz instead of .tar.xz in several packages for backward compatibility
 2016-01-11 13:52:50 -08:00
Todd Gamblin
d380820f3a Merge pull request #322 from eschnett/eschnett/gperftools-update 
Update gperftools
 2016-01-11 13:52:05 -08:00
Todd Gamblin
309425833b Merge pull request #325 from eschnett/eschnett/julia-update 
Several small updates to Julia
 2016-01-11 13:48:09 -08:00
Todd Gamblin
9bbb9a8f0a Merge pull request #330 from epfl-scitas/packages/cgal 
Added package : cgal
 2016-01-11 13:47:55 -08:00
Todd Gamblin
054c6eefdb Merge pull request #334 from adamjstewart/features/patchelf 
Add PatchELF package
 2016-01-11 13:47:31 -08:00
Adam J. Stewart
adbe1d4f06 Add PatchELF package 2016-01-11 13:54:26 -06:00
Adam J. Stewart
6a51b1d570 Add SZip package 2016-01-11 13:43:31 -06:00
alalazo
81a389151f cmake : added variant that activates the build of the ncurses gui 2016-01-11 13:00:23 +01:00
alalazo
625570e730 added package : cgal 2016-01-11 12:50:47 +01:00
Erik Schnetter
23c5a1e6e9 Build Lua on Darwin 2016-01-10 19:37:44 -05:00
Erik Schnetter
9f2dbc9df4 Update Lua to 5.3.2 2016-01-10 19:34:02 -05:00
Erik Schnetter
992b9c46dd Resolve readline/ncurses dependency when building Lua 2016-01-10 13:44:53 -08:00
Erik Schnetter
79a1de2f17 Add a patch to prevent Julia running out of virtual memory 2016-01-09 10:47:31 -05:00
Erik Schnetter
b18732173a Require Python to build Julia 2016-01-08 23:21:54 -05:00
Erik Schnetter
d9f1a55c90 Ensure than OpenBLAS provides a file liblapack.a 
OpenBLAS implements the virtual package "lapack", and its consumers apparently expect a "liblapack.a".
 2016-01-08 22:48:37 -05:00
Erik Schnetter
d5ff7fda6e Ensure the APPS environment variable is not set when building OpenSSL 2016-01-08 22:41:18 -05:00
Erik Schnetter
3d7e7c53c5 Require libunwind 2016-01-08 22:33:55 -05:00
Erik Schnetter
0c9acb0f62 Update gperftools to version 2.4 2016-01-08 22:32:00 -05:00
Erik Schnetter
2ac2985cf2 Require Python for PETSc 
PETSc requires Python for building.

I have a case where an HPC system has a very old default Python version, too old for Spack. So I load a module for Python, which makes Spack work. This module relies on LD_LIBRARY_PATH.

When building PETSc, Spack unsets LD_LIBRARY_PATH, breaking the Python that PETSc finds.

Explicitly requiring Python for PETSc makes building PETSc work.
 2016-01-08 22:24:42 -05:00
Erik Schnetter
e628896c2b parmetis requires cmake @2.8: 2016-01-08 22:12:19 -05:00
Erik Schnetter
da8fd5b30a Require cmake @2.8: for metis 2016-01-08 21:56:08 -05:00
Erik Schnetter
04f908a957 Require cmake @2.8: 2016-01-08 21:41:35 -05:00
Erik Schnetter
8da1dd2b45 Require cmake 2016-01-08 21:32:17 -05:00
Erik Schnetter
6214148d35 Use .tar.gz instead of .tar.xz for backward compatibility 2016-01-08 17:16:30 -05:00
Gregory L. Lee
7ad3e2b56b new python packages 2016-01-08 11:09:11 -08:00
Gregory L. Lee
175f20a9dc new and updated python packages 2016-01-07 11:12:47 -08:00
Erik Schnetter
1646bec1a4 Make PETSc build with OpenMPI 2016-01-07 13:54:47 -05:00
Todd Gamblin
dd04b6a873 Merge pull request #278 from eschnett/eschnett/hdf5-variants 
Enable several variants for HDF5
 2016-01-06 23:50:40 -08:00
Todd Gamblin
a651572cfd Merge pull request #307 from eschnett/eschnett/atop 
New package atop
 2016-01-06 23:40:03 -08:00
Ben Boeckel
e790146627 paraview: add some extra arguments on OS X 
X shouldn't be used on OS X and spack expects a Unix-style install, not
a .app bundle.
 2016-01-06 12:05:05 -05:00
Erik Schnetter
fd7c1fe584 Avoid using tabs 2016-01-06 10:10:15 -05:00
Todd Gamblin
84c7e457e9 Merge pull request #302 from eschnett/eschnett/correct-boost 
Correct `join_path` in package boost
 2016-01-06 04:34:44 -08:00
Todd Gamblin
a65fa54514 Merge pull request #270 from eschnett/eschnett/openssl-darwin 
Make OpenSSL build on Darwin
 2016-01-06 04:07:16 -08:00
alalazo
7670dc7efc glpk : added support for gmp 2016-01-06 10:05:48 +01:00
alalazo
24ba60168d added package : glpk 2016-01-06 09:49:10 +01:00
Erik Schnetter
cfe54b201d New package atop 2016-01-05 20:09:22 -05:00
Erik Schnetter
60d8413940 Support mbedtls, an alternative SSL library 2016-01-05 19:21:57 -05:00
Mike Nolta
2b801e2086 new package: py-astropy 2016-01-05 15:41:18 -05:00
Erik Schnetter
c18dfa058a Add details to comment 2016-01-05 14:09:54 -05:00
Erik Schnetter
12632f16b8 Combine with other OpenSSL Darwin patch 
Set KERNEL_BITS.
Don't use Darwin-specific configure script.
 2016-01-05 13:17:17 -05:00
Erik Schnetter
25934200de Merge branch 'develop' into eschnett/openssl-darwin 2016-01-05 13:09:57 -05:00
Erik Schnetter
24ced90913 Correct join_path in package boost 2016-01-05 09:40:30 -05:00
Todd Gamblin
20e8b67eb6 Merge pull request #297 from eschnett/eschnett/boost-darwin 
Support Darwin for Boost
 2016-01-05 00:42:31 -08:00
Erik Schnetter
96e5905bce Build multiple FFTW variants simultaneously 
FFTW can build only one floating point precision (float, double, long double, quad) at once, but they can all be installed simultaneously as the libraries have different names. It is common packages to decide only at run time which precision FFTW they need, and thus FFTW should offer all precisions at once.
 2016-01-04 12:14:42 -05:00
Tom Scogland
133fda11f2 Merge remote branch 'origin/llvm-rework' into llvm-rework 2016-01-03 17:22:57 -08:00
Tom Scogland
884f317d50 tweak gold support, added to gcc 
The gold linker support and gold plugin variants now use the same name.
Trying to apply use-flag-style discipline here despite the fact gold has
other implications for clang, this way globally enabling gold will have
a more consistent effect if that becomes possible.  The gold support in
gcc could use more testing to ensure it works consistently, but as long
as a binutils including gold is used the gcc configure tends to pick it
up, and it seems to work with 5.3.0 at least.
 2016-01-03 17:22:13 -08:00
Tom Scogland
31803d10aa bringing back configuration and build stages 2016-01-02 11:59:33 -08:00
Tom Scogland
356836ccbb removed extraneous comment lines 2016-01-01 22:30:02 -08:00
Erik Schnetter
03537a6be4 Support Darwin for Boost 
Ensure that builds on Darwin use the "darwin" toolset.
Also update Boost to 1.60.0.
 2016-01-01 17:38:42 -05:00
Erik Schnetter
f5a49280c3 Enable C++ and Fortran languages by default 2016-01-01 17:26:49 -05:00
Todd Gamblin
3c64c18bfc Merge pull request #274 from eschnett/eschnett/julia 
Add package for Julia
 2015-12-31 15:46:52 -08:00
Todd Gamblin
48ebb25c25 Merge pull request #271 from eschnett/eschnett/pcre2 
New package PCRE2
 2015-12-31 15:40:03 -08:00
Todd Gamblin
7062b216b8 Merge pull request #258 from epfl-scitas/packages/scalasca 
Packages/scalasca
 2015-12-31 15:27:39 -08:00
Tom Scogland
48f19b5fde add the gold linker to binutils 2015-12-30 16:59:39 -08:00
Tom Scogland
5d89fb8dfa ensure that clang-query gets installed 2015-12-30 16:59:39 -08:00
Tom Scogland
4ae98f8b21 significant llvm update 
This update significantly reworks the llvm and clang packages.  The llvm
package now includes variants allowing it to build and install any and
all of:

* clang
* lldb
* llvm's libunwind (why, WHY did they name it this?!?)
* polly (including building it directly into the clang tools, 3.7.0 only)
* clang extra tools
* compiler-rt (sanitizers)
* clang lto (the gold linker plugin that allows same to work)
* libcxx/libcxxabi
* libopenmp, also setting the default openmp runtime to same, when
  parameters happen this shoudl be an option of libomp or libgomp

Ideally, this should have rpath setup like the gcc package does, but
clang's driver has no support for specs as such, and no clearly
equivalent mechanism either.  If anyone has ideas on this, they would be
welcome.

One significant note related to gcc though, if you test this on LLNL
systems, or anywhere that has multiple GCCs straddling the dwarf2
boundary and sharing a libstdc++, build a gcc with spack and use that to
build clang.  If you use a gcc4.8+  to build this with an older
libstdc++ it will fail on missing unwind symbols because of the
discrepancy.

Resource handling has been changed slightly to move the unpacked archive
into the target rather than use symlinks, because symlinks break certain
kinds of relative paths, and orders resource staging such that nested
resources are unpacked after outer ones.
 2015-12-30 16:59:39 -08:00
Tom Scogland
01f811d546 legacy mysql bindings for python 2015-12-30 11:18:13 -08:00
Tom Scogland
31f674da3c python libraries, libedit, and ninja 
A pile of libraries and tools, libedit is actually important as a
replacement of readline for non-GPL projects.  Also ninja may be
worthwhile for some of the larger CMake projects, like llvm/clang.
 2015-12-30 11:13:09 -08:00
Todd Gamblin
3e3667f254 Revert "removing check as it can cause failures in zsh" 
This reverts commit 496e485691.

Undo overly large set of changes -- LLVM wasn't ready.  Tom can
recommit just the zsh stuff.
 2015-12-30 10:20:27 -08:00
Tom Scogland
496e485691 removing check as it can cause failures in zsh 2015-12-30 10:13:46 -08:00
Todd Gamblin
ff0d871612 Remove mock_configs; tests no longer modify spack home directory. 2015-12-27 21:13:18 -08:00
Todd Gamblin
c65fd3a289 Merge branch 'develop' into mplegendre-multi_pkgsrc_roots 
Conflicts:
	lib/spack/spack/cmd/create.py
	lib/spack/spack/cmd/extensions.py
	lib/spack/spack/cmd/fetch.py
	lib/spack/spack/cmd/uninstall.py
	lib/spack/spack/config.py
	lib/spack/spack/database.py
	lib/spack/spack/directory_layout.py
	lib/spack/spack/packages.py
	lib/spack/spack/spec.py
 2015-12-25 16:35:55 -08:00
Erik Schnetter
be12720eb7 Use filter_file instead of calling perl 2015-12-25 14:02:56 -05:00
Erik Schnetter
01f7e768f6 Enable several variants for HDF5 
+cxx, +fortran: Enable support for the respective languages
+threadsafe: Enable multi-threading
 2015-12-23 22:49:42 -05:00
Erik Schnetter
51f546fe92 Add comments to package file 2015-12-23 18:21:41 -05:00
Erik Schnetter
309877088d Build Julia 2015-12-23 18:21:40 -05:00
Erik Schnetter
a58dd8f6ab Remove leftover debug statement 2015-12-23 18:19:26 -05:00
alalazo
21dae4577a R : updated package 2015-12-23 10:20:13 +01:00
Erik Schnetter
60ec79eac3 New package PCRE2 
This is a major update of the package PCRE. It seems both PCRE and PCRE2 can be installed at the same time; their APIs are different.
 2015-12-22 18:53:43 -05:00
Erik Schnetter
a540a68561 Make OpenSSL build on Darwin 2015-12-22 18:51:49 -05:00
Todd Gamblin
d1d23ec5e6 Merge pull request #257 from eschnett/eschnett/hwloc-1.11.2 
Update hwloc; don't require libpciaccess on OS X
 2015-12-22 15:18:39 -08:00
Erik Schnetter
552d8ca5f0 Update rsync to 3.1.2 2015-12-22 16:40:09 -05:00
Erik Schnetter
6831ee6f0a Skip installing libpciaccess on Darwin 2015-12-22 16:24:05 -05:00
Erik Schnetter
6dc1fc03c1 Update hwloc; don't require libpciaccess on OS X 
- hwloc 1.11.2 is available.
- libpciaccess is not supported on OS X; don't require it there.
 2015-12-22 15:50:46 -05:00
Todd Gamblin
100ada0ed6 Merge pull request #266 from LLNL/bugfix/python3-setuptools-conflict 
fix conflict with setuptools and cached pyc files
 2015-12-22 09:19:57 -08:00
Gregory L. Lee
41fd380d1b fixed site pyc regular expression 2015-12-22 09:15:47 -08:00
Todd Gamblin
b1d40efd99 Merge pull request #261 from LLNL/features/prefer-versions-in-packages 
Add ability to prefer particular versions in packages.
 2015-12-22 08:25:52 -08:00
Gregory L. Lee
3db1c1761e only ignore cached site.py file 2015-12-22 08:03:17 -08:00
Todd Gamblin
5bcec9289e Merge pull request #263 from nolta/hdf5-mpi 
fix non-mpi hdf5 package build
 2015-12-22 07:57:11 -08:00
Gregory L. Lee
d85a46380c fix conflict with setuptools and cached pyc files 2015-12-22 06:50:18 -08:00
alalazo
fc43f3c730 valgrind : added package 2015-12-22 10:11:18 +01:00
Mike Nolta
bfc72c04fb fix non-mpi hdf5 package build 
Fixes a couple of issues in c5b7eba457.
 2015-12-21 18:59:01 -05:00
Todd Gamblin
fe0fdf60b4 Add ability to prefer particular versions in packages. 
- Adding `preferred=True` to a version directive will change its sort
  order in concretization.

- This provides us a rudimentary ability to keep the Spack stack
  stable as new versions are added.

- Having multiple stacks will come next, but this at least allows us
  to specify default versions of things instead of always taking the
  newest.
 2015-12-21 15:35:47 -08:00
Gregory L. Lee
c3aaf005e2 new python versions 2015-12-21 15:14:59 -08:00
Gregory L. Lee
f9326053b9 remove numpy compiler patch 2015-12-21 13:56:19 -08:00
Todd Gamblin
73ea15db8e Merge pull request #208 from epfl-scitas/features/resource_directive 
resource directive : implementation + clang / llvm use case
 2015-12-21 10:34:16 -08:00
Todd Gamblin
d5e9279c1d Merge pull request #215 from sjtbham/develop 
fix build to work against depends for modules created by setup.py and…
 2015-12-21 09:24:16 -08:00
alalazo
a411c497ab scalasca + dependencies : simplified build after #255 2015-12-21 16:10:55 +01:00
alalazo
0a191d6b09 scalasca : updated package build (depends on scorep, does not build twice). 2015-12-21 15:02:48 +01:00
Todd Gamblin
bb329d8a5c Merge pull request #231 from epfl-scitas/packages/scotch 
scotch: adding dependencies + variants for mpi, shared, compression and esmumps
 2015-12-20 14:29:19 -08:00
Todd Gamblin
d6edaa0970 Merge pull request #251 from epfl-scitas/packages/tau 
Improved build of tau and related dependencies
 2015-12-20 14:26:40 -08:00
alalazo
14c9c61275 tau : scorep is now a variant 2015-12-20 17:38:35 +01:00
Nicolas Richart
27d52badb1 removing completely the write_make_inc function 2015-12-20 13:38:22 +01:00
Nicolas Richart
614c4d1876 moving write_make_inc into a patch function 2015-12-20 13:27:43 +01:00
Todd Gamblin
37db5928b7 Merge pull request #109 from justintoo/add-package-spot 
(Package) Add Spot C++ library (v1.99.3)
 2015-12-19 21:06:22 -08:00
Todd Gamblin
22a4eb6b27 Merge pull request #226 from epfl-scitas/packages/mpiches 
mpich, mvapich2: changes the filter for the wrappers mpi{cc, cxx, f77, fc}
 2015-12-19 21:04:08 -08:00
Todd Gamblin
1b086c928c Merge pull request #227 from trws/fetch-deps 
fetch: add options to fetch missing or all deps
 2015-12-19 21:02:42 -08:00
Todd Gamblin
3d3bea618e Fix empty format strings in some packages. 2015-12-19 20:08:14 -08:00
Mike Nolta
e403576cf9 new package: cfitsio 2015-12-19 18:38:23 -05:00
Gregory L. Lee
8dd1f3ffa5 added mrnet 5.0.1 2015-12-19 07:43:34 -08:00
alalazo
f3837dd686 tau : removed direct otf2 support 2015-12-18 16:15:30 +01:00
alalazo
dfbf1b2205 Merge branch 'develop' of https://github.com/alalazo/spack into packages/tau 2015-12-18 13:00:43 +01:00
alalazo
8dc32aeedb Improved tau build and added optional dependencies 2015-12-18 12:58:29 +01:00
Todd Gamblin
3198522a7f Merge pull request #236 from nolta/cmake-enable-ssl 
cmake: enable ssl, for https downloads
 2015-12-17 23:03:31 -08:00
David Beckingsale
f91e1ae83f Added Lmod package 2015-12-17 15:26:47 -08:00
Todd Gamblin
4d982f5aca Merge pull request #86 from jgalarowicz/develop 
Add support for Krell Institute related products.
 2015-12-17 12:35:30 -08:00
Jim Galarowicz
c02cbaecd8 Change back the previous boost change and change the mrnet variant name to lwthreads. 2015-12-17 07:41:49 -08:00
Todd Gamblin
85c02dbe7b Merge pull request #167 from mathstuf/hdf5-fix-mpi-dependency 
Hdf5 fix mpi dependency
 2015-12-16 12:03:22 -08:00
Todd Gamblin
9ac4c730fb Merge pull request #241 from epfl-scitas/packages/gnuplot 
gnuplot : added package
 2015-12-16 11:37:26 -08:00
alalazo
cc9266e56c gsl : added package 2015-12-16 12:45:58 +01:00
Massimiliano Culpo
d5018e77a3 gnuplot : modifications to build on RHLE 6 2015-12-16 09:32:48 +01:00
Mike Nolta
917fb328bb cmake: enable ssl, for https downloads 
By default cmake builds its own curl, without SSL support. This
patch enables SSL when building cmake, fixing the following error:

  error: downloading 'https://...' failed

    status_code: 1
    status_string: "Unsupported protocol"
    log: Protocol "https" not supported or disabled in libcurl
 2015-12-15 12:39:30 -05:00
alalazo
0a0cd4b9d3 gnuplot : added package 2015-12-15 16:29:36 +01:00
Nicolas Richart
ed7db8e489 adding external dependencies + variants for mpi, shared and compression 2015-12-14 21:59:40 +01:00
alalazo
1bfb16592b fftw : added package 2015-12-14 16:31:02 +01:00
Jim Galarowicz
8df4fd9e94 Fix build of krell tools to use spack with minimal impact on rest of spack packages. 2015-12-13 17:13:34 -08:00
Jim Galarowicz
0fc83ba999 Fix merge conflict with papi package. 2015-12-11 17:23:54 -08:00
Ben Boeckel
6f978af77b hdf5: update dependents to declare MPI support 2015-12-10 11:53:40 -05:00
Ben Boeckel
79a641ccf1 paraview: update hdf5 comment 2015-12-10 11:51:54 -05:00
Ben Boeckel
c5b7eba457 hdf5: make mpi support optional 2015-12-10 11:51:54 -05:00
Tom Scogland
786f4cd2c2 add dependency fetching to mirror creation 2015-12-10 08:32:51 -08:00
Gregory L. Lee
3163d016db install python files to libxml2 prefix instead of python prefix and ignore non-python files when activating 2015-12-09 14:10:05 -08:00
Nicolas Richart
0daa08416a corrected filter_compilers + added it for mvapich2 2015-12-09 20:00:54 +01:00
Todd Gamblin
f6eb000381 Merge pull request #225 from epfl-scitas/packages/git 
Adding https support in git even if system lib are missing
 2015-12-09 10:59:47 -08:00
alalazo
20e67bc5e6 clang : solve the issue with missing default include paths for OpenMP and libc++ 
resource : support for finer grained linking of resources
 2015-12-09 17:15:26 +01:00
Nicolas Richart
31863c68d8 Adding curl and expat support to git for https repos 2015-12-09 11:00:33 +01:00
Todd Gamblin
e46af913be Merge pull request #148 from PaulDapolito/glib-dep 
added zlib dependency to glib package specification
 2015-12-09 01:44:00 -08:00
Todd Gamblin
8ebac18f50 Merge pull request #224 from epfl-scitas/packages/gdb 
gdb : added package
 2015-12-09 01:35:04 -08:00
Todd Gamblin
c41b9b7ddc Change github.com/scalability-llnl to github.com/llnl everywhere. 2015-12-09 01:24:15 -08:00
alalazo
4d5eb4ce7d gdb : added package 2015-12-09 09:06:10 +01:00
alalazo
c5b9732aed Should fix #177 
gcc : changed objdir to something out of srcdir and added '--with-sysroot=/'
binutils : added '--with-sysroot=/'
 2015-12-08 14:06:04 +01:00
Todd Gamblin
e7ab8d476d Merge pull request #219 from eschnett/eschnett/gmp 
Update gmp to 6.1.0
 2015-12-07 16:46:44 -08:00
Todd Gamblin
6bc86a6baa Merge pull request #220 from eschnett/eschnett/mpc 
Update mpc to 1.0.3
 2015-12-07 16:46:32 -08:00
Todd Gamblin
b0434fa486 Merge pull request #221 from davidbeckingsale/features/cleverleaf-boost 
Update CleverLeaf package to use Boost and fix SAMRAI MPI usage
 2015-12-07 16:46:15 -08:00
Matthew LeGendre
f8e046bb33 Fix issue with gcc 5.x not building on RHEL6 2015-12-07 15:49:47 -08:00
Gregory L. Lee
1a22a507d6 mesa requires +python variant of libxml2 2015-12-07 15:36:36 -08:00
David Beckingsale
36272c8136 Fix MPI selection in SAMRAI and remove narrow dependency specification 2015-12-07 14:58:16 -08:00
David Beckingsale
77bf133cd2 Update CleverLeaf package to use Boost and fix SAMRAI MPI usage 2015-12-07 14:33:31 -08:00
Erik Schnetter
aff95ee587 Update mpc to 1.0.3 2015-12-05 11:23:40 -05:00
Erik Schnetter
29537b9991 Update gmp to 6.1.0 2015-12-05 11:21:47 -05:00
Gregory L. Lee
5891847ae4 added py-pillow and updated py-basemap to depend on it 2015-12-03 15:35:28 -08:00
Gregory L. Lee
a56c7e5f1a Merge branch 'develop' of https://github.com/scalability-llnl/spack into develop 2015-12-03 15:02:49 -08:00
Gregory L. Lee
0f4efc018d updated package versions 2015-12-03 15:01:44 -08:00
Nicolas Richart
1a132e4fdb Missing declaration of the debug variant 2015-12-02 16:18:29 +01:00
Simon Thompson
aa137d8be0 fix build to work against depends for modules created by setup.py and add python3 support 2015-12-02 14:20:11 +00:00
Nicolas Richart
4bb6f23ae1 Adding variant for mpi and python + compression for iostream 2015-12-02 13:26:00 +01:00
Massimiliano Culpo
39a3cfd4d9 reource directive accepts 'basename' keyword 
llvm : libc++ variant
 2015-12-02 12:24:37 +01:00
Massimiliano Culpo
a173ab1e31 clang : default OpenMP is libomp 2015-12-01 12:16:08 +01:00
Kevin Huck
cd1207329b Updating the OMPT hash again... 2015-11-30 10:32:07 -08:00
Kevin Huck
d5c7cd5e50 Had to force a patch to the OMPT support, so the hash for v0.1 has 
changed.
 2015-11-30 09:48:15 -08:00
Tom Scogland
b253308eee returning flux to a building state for web release 
Flux package reworked to include all new dependencies, fixed issues with a
clean-build of hwloc, lua and czmq as well that prevented flux from building
cold on a minimal system.
 2015-11-29 19:22:31 -08:00
Todd Gamblin
7383bd393e Fixed bug #42: problem with satisfies() for virtual dependencies. 
- _cross_provider_maps() had suffered some bit rot (map returned was
  ill-formed but still worked for cases with one vdep)

- ProviderIndex.satisfies() was only checking whether the result map
  was non-empty.  It should check whether all common vdeps are *in*
  the result map, as that indicates there is *some* way to satisfy
  *all* of them.  We were checking whether there was some way to
  satisfy *any one* of them, which is wrong.

- Above would cause a problem when there is more than one vdep provider.

- Added test that covers this case.

- Added `constrained()` method to Spec. Analogous to `normalized()`:
  `constrain():constrained() :: normalize():normalized()`
 2015-11-27 23:06:18 -08:00
Todd Gamblin
89d5127900 New, cleaner package repository structure. 
Package repositories now look like this:

    top-level-dir/
        repo.yaml
        packages/
            libelf/
                package.py
            mpich/
                package.py
            ...

This leaves room at the top level for additional metadata, source,
per-repo configs, indexes, etc., and it makes it easy to see that
something is a spack repo (just look for repo.yaml and packages).
 2015-11-26 14:19:27 -08:00
Massimiliano Culpo
1fe626ec7c resource directive : sketch of implementation + clang / llvm use case 2015-11-26 17:53:33 +01:00
Tom Scogland
f8ffb005c8 make cram an extension of python 2015-11-25 15:10:18 -08:00
Todd Gamblin
c526c71f56 Merge pull request #201 from alfredo-gimenez/develop 
Fixed Mitos dependency and added new version
 2015-11-24 16:12:12 -08:00
Alfredo Gimenez
a0d388875e Fixed Mitos dependency and added new version 2015-11-24 15:12:31 -08:00
Tom Scogland
a1553dd12b adding google sparsehash and cityhash libraries 2015-11-24 09:23:36 -08:00
Todd Gamblin
e2412e3f21 Merge branch 'eschnett-openblas' into develop 2015-11-24 00:52:48 -08:00
Todd Gamblin
52cce2d710 Revert "WIP: openssl: set KERNEL_BITS to make ./config work" 2015-11-24 00:30:08 -08:00
Erik Schnetter
1d90d98e40 Remove commented-out code 2015-11-23 20:32:06 -05:00
Kevin Huck
4dd47fbc78 cleaning up commits for merge request 2015-11-23 16:16:52 -08:00
Todd Gamblin
98ccad8105 Merge pull request #189 from mathstuf/openssl-use-64-bits 
WIP: openssl: set KERNEL_BITS to make ./config work
 2015-11-23 16:09:28 -08:00
Todd Gamblin
de2213a621 Merge pull request #188 from mathstuf/python-osx 
python: target OS X 10.6
 2015-11-23 16:08:56 -08:00
Todd Gamblin
583b8e3ade Merge pull request #187 from mathstuf/dbus-osx-disable-launchd 
dbus: disable launchd support
 2015-11-23 16:08:35 -08:00
Todd Gamblin
b5fffc71c9 Merge pull request #168 from mathstuf/libxml2-drop-python-dep 
Libxml2 drop python dep
 2015-11-23 16:08:24 -08:00
Todd Gamblin
0011903e23 Merge pull request #165 from mathstuf/paraview-update-deps 
Paraview update deps
 2015-11-23 16:04:03 -08:00
Todd Gamblin
9bc27561ec Merge pull request #164 from mathstuf/matplotlib-optional-deps 
Matplotlib optional deps
 2015-11-23 16:03:31 -08:00
Todd Gamblin
76100a6f08 Merge pull request #158 from davidbeckingsale/features/cleverleaf 
Add CleverLeaf package
 2015-11-23 16:00:39 -08:00
David Beckingsale
38b83362b6 Updated url and description 2015-11-23 15:58:33 -08:00
Todd Gamblin
c13329c25a Merge pull request #155 from epfl-scitas/packages/mvapich2 
packages/mvapich2 : added support for process managers and network types
 2015-11-23 15:53:53 -08:00
Todd Gamblin
6798c177c6 Merge pull request #157 from alfredo-gimenez/develop 
Added Python Twisted library
 2015-11-23 15:51:57 -08:00
Todd Gamblin
8fbd79fa2e Merge pull request #198 from eschnett/update-papi 
Update PAPI
 2015-11-23 15:42:09 -08:00
Erik Schnetter
60fd7e2268 Update PAPI 2015-11-23 16:50:11 -05:00
Erik Schnetter
cb21a5b309 Add OpenBLAS 2015-11-23 16:48:06 -05:00
Erik Schnetter
1330c10fc8 Don't use https for downloading 2015-11-23 16:00:10 -05:00
Todd Gamblin
be92d0b6a4 Merge pull request #194 from trws/judy 
add judy dynamic array/meta-trie/hash table lib
 2015-11-23 10:10:46 -08:00
Todd Gamblin
7392e1af59 Merge pull request #190 from bhatele/feature/networktools 
Add damselfly package
 2015-11-23 10:10:12 -08:00
Tom Scogland
34700d560f add judy dynamic array/meta-trie/hash table lib 
Just adding judy.
 2015-11-20 12:15:32 -08:00
Abhinav Bhatele
4edcc59c3d Add damselfly package 2015-11-19 23:05:21 -08:00
Ben Boeckel
c023b1000e python: target OS X 10.6 
Targeting anything older lacks rpath stuff which configure uses.
 2015-11-19 17:52:59 -05:00
Ben Boeckel
150e43f3fd WIP: openssl: set KERNEL_BITS to make ./config work 
Why OpenSSL refuses to build without this (it explicitly warns about it)
is a mystery.
 2015-11-19 17:51:44 -05:00
Ben Boeckel
b6d368d7a0 dbus: disable launchd support 2015-11-19 17:50:30 -05:00
Todd Gamblin
34e445a480 Merge pull request #176 from truatpasteurdotfr/develop 
jdk: updated to version 8u66
 2015-11-18 15:58:33 -06:00
Todd Gamblin
5086a1e825 Merge pull request #178 from eschnett/develop 
Update HDF5 to 1.8.16
 2015-11-18 15:58:13 -06:00
Todd Gamblin
38ce53bc85 Merge pull request #179 from eschnett/update-hwloc 
Update hwloc to 1.11.1
 2015-11-18 15:58:06 -06:00
Todd Gamblin
89c11221ed Merge pull request #181 from eschnett/update-openmpi 
Update OpenMPI to 1.10.1; correct configure error in OpenMPI
 2015-11-18 15:57:56 -06:00
Todd Gamblin
025566b494 Merge pull request #182 from eschnett/hdf5-mpi 
HDF5: Support non-MPICH MPI implementations
 2015-11-18 15:57:29 -06:00
Todd Gamblin
4f8380959c Merge pull request #183 from eschnett/add-jemalloc 
Add jemalloc package
 2015-11-18 15:56:46 -06:00
Erik Schnetter
2e51e207f9 Update cmake to 3.4.0 2015-11-18 15:17:48 -05:00
Erik Schnetter
cbc552e91e Add jemalloc package 2015-11-18 13:43:49 -05:00
Erik Schnetter
511ffc3b44 HDF5: Support non-MPICH MPI implementations 2015-11-18 13:33:04 -05:00
Erik Schnetter
e36fd7d29f Update OpenMPI to 1.10.1; correct configure error in OpenMPI 2015-11-18 13:13:13 -05:00
Erik Schnetter
af9fe0a038 Update hwloc to 1.11.1 2015-11-18 12:37:54 -05:00
Erik Schnetter
893e05540c Update HDF5 to 1.8.16 2015-11-18 09:55:45 -06:00
Tru Huynh
b2a85bc12e updated to version 8u66 2015-11-18 10:02:22 +01:00
Erik Schnetter
cc49f9b657 Update OpenSSL package 2015-11-17 18:28:20 -05:00
Erik Schnetter
1003b847b6 Remove comment 2015-11-17 17:10:04 -05:00
Erik Schnetter
ad0a1bf70d Add rsync package 2015-11-17 16:47:47 -05:00
Ben Boeckel
b98c25c1fb paraview: update matplotlib and numpy deps 2015-11-16 17:07:28 -05:00
Ben Boeckel
5eb8e1eec8 py-pyside: update docstring 2015-11-16 17:07:27 -05:00
Ben Boeckel
d40897404b py-matplotlib: make the gui and ipython support optional 
ipython, nice as it is, is not required to use matplotlib. The UI bits
are also optional and dragging in Qt and Tcl/Tk for the library
shouldn't be the default.
 2015-11-16 17:07:27 -05:00
Ben Boeckel
485528cffa paraview: configure the python and MPI executables 2015-11-16 17:05:17 -05:00
Ben Boeckel
d3ead7061e paraview: require qt4 
Qt5 has bugs which need at least 5.6.0 for a fix.
 2015-11-16 17:04:35 -05:00
Ben Boeckel
45d981caab paraview: add dependency on libxml2 back 2015-11-16 11:45:27 -05:00
Ben Boeckel
ca01adb503 libxml2: make the python dependency optional 
Also turn it off by default since it is usually not necessary. Anything
needing the Python bindings should declare it explicitly.
 2015-11-16 11:30:35 -05:00
Tom Scogland
8feaefadcf updating lua package to install in correct order 2015-11-13 09:43:03 -08:00
Todd Gamblin
55662eca69 Merge branch 'develop' into mplegendre-multi_pkgsrc_roots 
Conflicts:
	lib/spack/spack/__init__.py
	lib/spack/spack/directives.py
	lib/spack/spack/packages.py
 2015-11-12 15:16:06 -08:00
David Beckingsale
679b617649 Add CleverLeaf package 2015-11-11 12:33:08 -08:00
Alfredo Gimenez
666d9e88f5 Added Python Twisted library 2015-11-10 15:37:09 -08:00
Massimiliano Culpo
27c64f7740 mvapich2 : changed method name for consistency. Removed possibly duplicated flags 2015-11-09 16:02:38 +01:00
Massimiliano Culpo
42bc552dd7 mvapich2 : variant strings are associated with a named variable 2015-11-09 16:02:25 +01:00
Massimiliano Culpo
79ed9de4c1 mvapich2 : added variants for different network types 2015-11-09 16:02:12 +01:00
Massimiliano Culpo
0ae05fdf99 mvapich2 : added variants for different process managers 2015-11-09 16:01:56 +01:00
Massimiliano Culpo
4a72bd7919 mvapich2 : fixed typos. Added FIXME 2015-11-09 16:01:27 +01:00
Massimiliano Culpo
076eaba6e3 mvapich2 : fixed some issues with the package. Needs further improvment with respect to network and pm 2015-11-09 16:00:03 +01:00
Jim Galarowicz
0ced060b87 cbtf did not compile with boost 1.59, so reverted to boost 1.50 temporarily until we fix the cbtf/boost compile issues. 2015-11-06 15:15:38 -08:00
Jim Galarowicz
2aa501bf3d Update the checksum value for the new tarball 2015-11-06 14:19:00 -08:00
Jim Galarowicz
046b348bd3 Merge remote-tracking branch 'upstream/develop' into develop 
Get up to date with rest of develop repository.
 2015-11-06 11:55:49 -08:00
Jim Galarowicz
aa9b14aff4 Match up with the new binutils package file. It does what OSS needs w.r.t. libiberty. 2015-11-06 11:55:20 -08:00
Jim Galarowicz
7e6b7795f1 Match up with the new binutils package file. It does what OSS needs w.r.t. libiberty. 2015-11-06 11:53:53 -08:00
Jim Galarowicz
d6a2ab08ac Match up with the new binutils package file. It does what OSS needs w.r.t. libiberty. 2015-11-06 11:47:00 -08:00
Todd Gamblin
9474b8cdac Merge pull request #153 from ktkirk/libxml2 
Was getting system python over spack python
 2015-11-05 10:12:55 -08:00
Gregory Lee
886861c9f4 Merge pull request #151 from scalability-llnl/features/bzip2-mac 
Modified bzip2 package to work properly on macs.
 2015-11-05 09:29:47 -08:00
David Beckingsale
19876161c7 Update ZSH version 2015-11-05 07:42:18 -08:00
Kelly T. Kirk
618a1c7119 Was getting system python over spack python 2015-11-05 08:01:00 -05:00
Todd Gamblin
1c4ef29962 Add Sphinx package 2015-11-04 17:55:43 -08:00
Todd Gamblin
f201bfb998 Modified bzip2 package to work properly on macs. 2015-11-04 17:43:22 -08:00
Paul Dapolito
16f0ece75b added zlib dependency to glib package specification 2015-11-01 19:55:14 -08:00
Todd Gamblin
58adff307f Merge pull request #142 from mathstuf/dbus-disable-systemd 
dbus: disable systemd
 2015-10-29 00:07:03 -07:00
Todd Gamblin
5d626ac561 Merge pull request #141 from epfl-scitas/packages/clang 
clang : updated versions + depends_on(python)
 2015-10-29 00:06:50 -07:00
Todd Gamblin
11c3a9f60d Merge pull request #143 from mathstuf/update-ncurses 
ncurses: update package
 2015-10-29 00:03:40 -07:00
Todd Gamblin
130d2d8de0 Merge pull request #144 from mathstuf/add-paraview 
paraview: add package
 2015-10-29 00:03:15 -07:00
Todd Gamblin
dab230845d Merge pull request #121 from epfl-scitas/issues/gcc 
GCC : added variant to packages for binutils, solve linking time error
 2015-10-28 23:29:33 -07:00
Ben Boeckel
ddbfc40303 paraview: add package 
A first attempt; builds successfully. Some dependencies have hard-coded
dependencies where they shouldn't (e.g., hdf5 -> mpi, libxml -> python),
but that's a different rabbit hole.
 2015-10-27 15:37:31 -04:00
Ben Boeckel
b88da83a12 dbus: disable systemd 
Not necessary in spack. Also forcefully installs outside of the prefix.
 2015-10-27 13:51:23 -04:00
Ben Boeckel
e8f5a85ffd ncurses: update package 2015-10-27 13:50:59 -04:00
Massimiliano Culpo
3913c10afb clang : updated versions and dependencies 
llvm : added dependency on 'python@2.7:' for better portability
 2015-10-27 08:04:55 +01:00
Massimiliano Culpo
8b22a4f4f8 llvm : updated versions 2015-10-27 08:04:20 +01:00
Paul Dapolito
cd2a23384f Added v5.2.2 for xz library 2015-10-26 14:28:56 -07:00
Massimiliano Culpo
e812c35689 GCC : removed binutils variant 2015-10-23 10:11:38 +02:00
Todd Gamblin
f76b3890ff Merge pull request #137 from davidbeckingsale/features/ompi-wrappers 
Filter wrapper data to use correct compilers in OpenMPI
 2015-10-22 16:01:55 -04:00
David Beckingsale
9f496e5efa Replace compiler in f90 and f77 wrappers if they exist 2015-10-22 09:50:02 -07:00
David Beckingsale
41c01b523f Filter wrapper data to use correct compilers in OpenMPI 2015-10-22 09:13:20 -07:00
Todd Gamblin
cbcc6fc9f5 Merge branch 'khuck-develop' into develop, github PR #136 2015-10-22 08:27:23 -07:00
Kevin Huck
7cb557cba7 Adding dependency on ompt-openmp, now that it is a package. 2015-10-22 08:06:31 -07:00
Kevin Huck
caf93cc408 Adding package for OMPT support in the LLVM/Clang OpenMP runtime, 
which gives OMPT support for applications built with GCC, Intel or
LLVM/Clang.
 2015-10-22 08:03:50 -07:00
Massimiliano Culpo
e6a44bd8ac GCC : removed dependency on libelf. Removed isl variant 2015-10-22 15:55:43 +02:00
Massimiliano Culpo
f475ec4ce6 Merge branch 'develop' of https://github.com/scalability-llnl/spack into issues/gcc 
Conflicts:
	var/spack/packages/gcc/package.py

GCC : removed dependency on libelf. Removed isl variant
 2015-10-22 15:53:44 +02:00
Kevin Huck
24838a62b4 Changed date formatting. 2015-10-22 06:02:56 -07:00
Kevin Huck
2a61ff0794 Changing git checkout from "master" to commit 
d2e66ddde689120472fc57fc546d8cd80aab745c
 2015-10-22 03:57:33 -07:00
Kevin Huck
fb9eca4226 Added an APEX package, but it is still using the git master instead 
of a release.
 2015-10-21 19:35:31 -07:00
Kevin Huck
c082abfb65 Modified the binutils package to use --enable-shared. Required by tools that 
use binutils and get this error (or equivalent):
"relocation R_X86_64_32S against `bfd_errmsgs' can not be used when
making a shared object; recompile with -fPIC"
 2015-10-21 18:32:57 -07:00
Todd Gamblin
1f662465c2 Merge pull request #119 from mamelara/develop 
Added current version 3.2 of libffi version 3.1 has a bug
 2015-10-21 16:07:26 -04:00
Todd Gamblin
c8f01480d6 Merge pull request #128 from mathstuf/netcdf-new-linker-mpi 
netcdf: link to MPI
 2015-10-21 16:02:59 -04:00
Todd Gamblin
c388cbe8e4 Merge pull request #131 from jsquyres/pr/openmpi-update 
openmpi: update package versions of Open MPI
 2015-10-21 15:59:12 -04:00
Todd Gamblin
6773a2b3bf Merge pull request #132 from jsquyres/pr/mpich-mpi-version-fix 
mpich: add fine-grained MPI conformance versions
 2015-10-21 15:58:41 -04:00
Todd Gamblin
59dfb1c175 Merge pull request #134 from davidbeckingsale/features/ncdu 
Added ncdu package
 2015-10-21 15:58:02 -04:00
Todd Gamblin
345fd3b285 Merge pull request #133 from epfl-scitas/packages/trilinos 
Packages/trilinos
 2015-10-21 15:54:13 -04:00
Kevin Huck
e0e79a2cb3 Adding package for activeharmony. 2015-10-21 11:56:01 -07:00
David Beckingsale
7e2f3cff44 Added ncdu package 2015-10-19 15:41:46 -07:00
Massimiliano Culpo
ec5560374c glm : added basic configuration for the package 2015-10-19 13:56:08 +02:00
Massimiliano Culpo
aab7102b9b matio : added basic configuration for the package 2015-10-19 13:55:44 +02:00
Massimiliano Culpo
3a4bdf1856 trilinos : first version that compiles on bellatrix 2015-10-19 13:48:46 +02:00
Massimiliano Culpo
ff0d039a1f trilinos : prototype for the whole package 2015-10-19 13:48:38 +02:00
Massimiliano Culpo
f4460894be hdf5 : updated version 
mpich : updated version
trilinos : created stub
 2015-10-19 13:48:24 +02:00
Todd Gamblin
44ba16a391 Add libiberty option to binutils 2015-10-17 17:04:34 -07:00
Jeff Squyres
67b94acd42 mpich: add fine-grained MPI conformance versions 
Similar to the Open MPI and MVAPICH packages.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2015-10-17 07:06:06 -04:00
Jeff Squyres
43f58d9f61 openmpi: update the MPI conformance for each Open MPI version 2015-10-16 15:27:22 -04:00
Jeff Squyres
f39e40664f openmpi: add v1.10.0 and update v1.8.2->v1.8.8 2015-10-16 15:26:58 -04:00
Ben Boeckel
9ec4ae83af netcdf: link to MPI 
Newer GNU linker refuses to use transitive linking; if netcdf calls
MPI_Allreduce, it must link the providing library directly.

Also switched to CMake because I don't know autoconf well enough to know
how to put MPI stuff into it.
 2015-10-15 09:20:16 -04:00
Gregory L. Lee
5dd39bfca5 bug fix for github issue 122 2015-10-08 08:12:30 -07:00
Todd Gamblin
5d64012868 Merge branch 'features/libxcb-1.11.1' into develop 2015-10-08 00:13:47 -07:00
Massimiliano Culpo
17de9a37f1 gcc : fixed spec file 2015-10-06 18:49:18 +02:00
Massimiliano Culpo
d44571257a spec file : everything is dumped, only link rule is modified 2015-10-06 18:49:04 +02:00
Massimiliano Culpo
f068d1ba57 GCC : added variants for libelf, binutils, isl. gcc@5.0: still has issues 2015-10-06 18:48:47 +02:00
Gregory L. Lee
6fcf16b710 added libxcb version 1.11.1 2015-10-05 12:59:26 -07:00
Matthew LeGendre
18f0b24a7f Add tests for spack external dependencies, plus fixes for issues found by those tests. 2015-10-05 11:37:36 -07:00
Matthew LeGendre
650c9d4e36 Allow spack to build against external non-spack-installed packages. 2015-10-05 11:37:36 -07:00
Matthew LeGendre
ee68a76a19 Bug fixes from testing spack preferred packages 2015-10-05 11:36:06 -07:00
Mario Melara
75d30b08fb Added current version 3.2 of libffi version 3.1 has a bug that interferes with glib 2015-10-01 21:51:55 -07:00
Adam Moody
5563c66675 update scr to 1.1.8 2015-09-29 18:18:34 -07:00
Mario Melara
13eb461ec3 Adding bowtie2 package along with patch 2015-09-24 11:21:54 -07:00
Mario Melara
521632b3dc Added samtools bioinformatics software 2015-09-23 16:30:44 -07:00
Todd Gamblin
6d4eed3845 Merge pull request #102 from RasmusWL/features/fish 
Add fish (shell) package
 2015-09-23 01:37:59 -07:00
Todd Gamblin
82ea7aec51 Merge pull request #106 from justintoo/add-package-doxygen 
(Package) Add Doxygen (v1.8.10)
 2015-09-23 01:37:31 -07:00
Todd Gamblin
d474eeb424 Merge pull request #110 from scalability-llnl/features/boostupdate 
update boost package for new releases
 2015-09-23 00:32:22 -07:00
Todd Gamblin
5d6baacc56 Merge pull request #111 from scalability-llnl/features/protobuf 
add protobuf package
 2015-09-23 00:31:26 -07:00
Todd Gamblin
46cf0a23d9 Merge pull request #112 from scalability-llnl/features/glog 
add glog package
 2015-09-23 00:30:37 -07:00
Todd Gamblin
f02af701e5 Merge pull request #113 from scalability-llnl/features/gflags 
add gflags package
 2015-09-23 00:29:50 -07:00
Todd Gamblin
5f826a0ab7 Merge pull request #114 from scalability-llnl/features/snappy 
Features/snappy
 2015-09-23 00:27:27 -07:00
Adam Moody
84823ed828 add lmdb package 2015-09-22 12:17:01 -07:00
Adam Moody
3ade141829 add leveldb package 2015-09-22 11:59:09 -07:00
Adam Moody
30acc6f2f0 add snappy package 2015-09-21 16:45:59 -07:00
Adam Moody
22ba02b22b add gflags package 2015-09-21 16:40:23 -07:00
Adam Moody
b5d7cd55ce add glog package 2015-09-21 16:30:11 -07:00
Adam Moody
e4e22ed17e add protobuf package 2015-09-21 16:19:50 -07:00
Justin Too
3691201b4f (Package) Add Spot C++ library (v1.99.3) 2015-09-21 11:04:56 -07:00
Justin Too
99ca0f3153 (Package) Add Doxygen (v1.8.10) 2015-09-11 20:29:18 +00:00
Rasmus Wriedt Larsen
b06117f77a Add fish (shell) package 2015-09-03 14:19:27 -07:00
Adam Moody
ac088bae6a update boost 2015-09-01 16:02:14 -07:00
Todd Gamblin
6af49d41fd Add elfutils. 2015-08-27 00:10:53 -07:00
Todd Gamblin
13fd742610 Merge branch 'features/pidx' into develop 2015-08-26 23:48:52 -07:00
Todd Gamblin
babbc5bb45 Minor fix-ups for PIDX 2015-08-26 23:48:36 -07:00
Gregory L. Lee
2c3e7a6f87 added graphviz dependency and dysect variant to STAT 2015-08-25 11:48:12 -07:00
Gregory L. Lee
1c9c5a385d added graphviz and dependencies 2015-08-25 11:38:39 -07:00
Todd Gamblin
360b307f68 Save progress. import gov.llnl.spack.mpich works. 2015-08-24 09:14:16 -07:00
Gregory L. Lee
689dbb8fb6 use filter_file instead of patch 2015-08-24 08:51:41 -07:00
Jim Galarowicz
24c609b6df Updates to the Krell related product packages. 2015-08-22 09:34:44 -05:00
Cyrus Harrison
8821715377 add version-based url map for cmake, provide md5 for cmake 3.3.1 2015-08-19 14:18:02 -07:00
Jim Galarowicz
fe9959d4da Merge remote-tracking branch 'upstream/develop' into develop 2015-08-18 08:05:25 -05:00
Peer-Timo Bremer
40b21d7cbe Initial version of PIDX package 2015-08-17 15:38:12 -07:00
Gregory L. Lee
bd1cd83d71 added lapack and blas deps, fixed gfortran compiler dependency 2015-08-17 11:54:14 -07:00
Todd Gamblin
a2f2e6a4ff Save changes to external repo integration 2015-08-16 12:54:02 -07:00
Matthew LeGendre
c7b8d09c7f Add packagerepos to spack, allowing for creating multiple package repositories. 2015-08-16 12:48:32 -07:00
Gregory L. Lee
92ea86dc36 moved lapack package to netlib-lapack 2015-08-14 16:30:35 -07:00
Gregory L. Lee
ec47ab16ce updated blas and lapack packages 2015-08-14 16:27:51 -07:00
Todd Gamblin
c8f65c1530 Fix 2.6 incompatibility 2015-08-13 00:21:02 -07:00
Todd Gamblin
17c2a0d6f3 Merge pull request #92 from trws/flux-build 
pre-alpha flux build and requisite dependencies
 2015-08-13 00:02:49 -07:00
Todd Gamblin
58f848fa29 Merge pull request #94 from alfredo-gimenez/dev-pandas 
Fixed py-pandas package
 2015-08-13 00:00:35 -07:00
Todd Gamblin
f34b04e555 Merge pull request #87 from alfredo-gimenez/develop 
Added gui and cscope features to Vim package
 2015-08-12 23:58:27 -07:00
Alfredo Gimenez
d6bf9c9887 Cscope vim variant depends on cscope 2015-08-07 07:58:04 -07:00
Alfredo Gimenez
d017c5080a Fixed py-pandas package 2015-08-07 00:03:14 -07:00
Alfredo Gimenez
067ecb90b9 Added cscope (dependency for vim+cscope) 2015-08-06 09:28:28 -07:00
Tom Scogland
7182671f8f pre-alpha flux build and requisite dependencies 
NOTE: the ncurses package now installs *BOTH* versions, wide and non-wide
character for compatibility with packages that require either one.  It may be
desirable for this to be an option in the future.
 2015-08-03 11:59:52 -07:00
Mike Nolta
7ebb4fcedc add missing gmp dependency to mpfr package 2015-08-01 16:00:13 -04:00
Tom Scogland
016eef6a16 adding the bear compilation database generator 2015-07-29 14:21:03 -07:00
Alfredo Gimenez
00ab6eb616 Vim with added feature support, including gvim 2015-07-23 11:38:02 -07:00
Tom Scogland
6ad5210216 adding a zsh package 2015-07-22 11:35:51 -07:00
Jim Galarowicz
9fee7be695 Add the initial version of the OpenSpeedShop spack build file. OpenSpeedShop is an application performance analysis tool that runs on Linux and gathers a number of different types of performance data and displays that data in a command line tool (CLI) and via a graphical user interface (GUI). 2015-07-21 11:26:59 -05:00
Jim Galarowicz
e8235b10c6 Add the cbtf-lanl spack build package. cbtf-lanl is LANLs contribution to the CBTF project. It contains psTool and memTool which are example tools, showing use case examples for CBTF. 2015-07-21 11:23:23 -05:00
Jim Galarowicz
23971bae92 Add the cbtf-krell spack build package. cbtf-krell is the krell contribution to the CBTF project and includes services, messages, and core libraries and components that support performance information gathering, transfer, and reduction. 2015-07-21 11:20:27 -05:00
Jim Galarowicz
eff5016653 Add the cbtf spack build package. cbtf is the base package for the component based tool framework and is used for building and connecting cbtf components, including distributed components via the MRNet transfer mechanism. 2015-07-21 11:15:53 -05:00
Jim Galarowicz
a9c737f911 Add spack build package for Xerces-C which is a supporting package for the krell related projects. 2015-07-21 10:59:52 -05:00
Jim Galarowicz
f5093094eb Add the cbtf-argonavis project package file. cbtf-argonavis is a project based on CBTF that supports performance analysis of GPU applications. 2015-07-21 10:58:16 -05:00
Jim Galarowicz
15ec3cb3cd Add qt3 version support and a variant that controls patching the qt3 version for compile issues and answering yes to the license questions during build. 2015-07-21 10:51:53 -05:00
Jim Galarowicz
b4e0804b37 Add the latest version to the papi package. 2015-07-21 10:50:11 -05:00
Jim Galarowicz
64c8fd3fa1 Add krelloptions variant that is used to turn on a configuration option to build the thread safe lightweight libraries. 2015-07-21 10:49:15 -05:00
Jim Galarowicz
13421dc4aa Add patches that enable features added for krell related products. Update the package file to add a krellpatch variant to control adding the patches. 2015-07-21 10:20:05 -05:00
Jim Galarowicz
0591980cbe Add configuration change for krell related products, they expect the dyninst includes in include/dyninst. 2015-07-21 10:17:37 -05:00
Jim Galarowicz
d1f127d8ef Add changes for krell related products to binutils. Add a patch that installs libiberty_pic.a which krell products will favor/use. 2015-07-21 10:15:17 -05:00
Todd Gamblin
e097696390 Update concretize to check for more changes and iterate further. 2015-07-16 01:12:11 -07:00
Todd Gamblin
8828dbf2e8 Remove superfluous print in vim. 2015-07-14 23:48:07 -07:00
Todd Gamblin
2e90599283 Merge branch 'develop' of github.com:scalability-llnl/spack into develop 2015-07-14 23:43:59 -07:00
Todd Gamblin
6f8a4318c5 Remove python 2.6-incompatible format expression. 2015-07-13 18:25:18 +00:00
Tom Scogland
889485181e adding gnu global tags and exuberant ctags 2015-07-10 13:54:38 -07:00
Tom Scogland
fda208f6b8 adding YAPF (Yet Another Python Formatter) 2015-07-09 14:55:27 -07:00
Gregory L. Lee
2e37523428 for LaunchMON added latest git commit and dependences 2015-07-08 11:25:41 -07:00
Gregory L. Lee
ddfc276688 removed workaround 2015-07-02 15:14:30 -07:00
Florent Pruvost
e06d351f7a add cblas headers in install directory 2015-07-02 02:05:00 -07:00
Todd Gamblin
7625881cb3 Merge pull request #75 from alfredo-gimenez/develop 
Thanks!
 2015-07-02 01:27:47 -07:00
Todd Gamblin
6f94a2567b Add py-lockfile and py-python-daemon packages. 2015-07-02 00:40:25 -07:00
Alfredo Gimenez
25c1678004 Commented out old version 2015-06-23 17:39:23 -07:00
Alfredo Gimenez
9f27ddc256 New mpfr release invalidates previous download link (not sure where old version is...) 2015-06-23 17:36:57 -07:00
Todd Gamblin
a51d4afe3e Minor simplification (os.environ -> env) 2015-06-20 20:25:12 -07:00
Alfredo Gimenez
314ecc54fe Thrift python support 2015-06-18 17:29:16 -07:00
Alfredo Gimenez
f832719ceb Added silo 4.8 with HDF5 (for LULESH 2.0) 2015-06-18 12:31:01 -07:00
Alfredo Gimenez
0c028e24b4 Removed Lua dependency 2015-06-18 10:30:02 -07:00
Alfredo Gimenez
55e24548c3 Added Thrift (HBase management in C++) 2015-06-18 10:29:34 -07:00
Tom Scogland
912c29471a adding python pyelftools package 2015-06-17 15:19:46 -07:00
Todd Gamblin
607f263fbc Merge pull request #61 from alfredo-gimenez/develop 
Mitos 0.9.1
 2015-06-11 16:31:28 -07:00
Todd Gamblin
3cb10f92af Merge pull request #62 from trws/tmuxinator 
Partial ruby extension and tmuxinator package
 2015-06-11 16:31:15 -07:00
Todd Gamblin
9955df896b Merge pull request #63 from trws/silver-searcher 
adding package for the silver searcher
 2015-06-11 16:31:04 -07:00
Tom Scogland
a087fd71e4 Removing comment line 
Missed that the auto-generated comment line stuck around.
 2015-06-11 13:57:19 -07:00
Tom Scogland
d92ac2a6b2 Small ruby enhancement and tmuxinator package 
It is currently less painful to pull the source from github, compile it into a
gem, then install the gem, than it is to download a gem and install it.  This
still lacks an activation mechanism, but `spack use tmuxinator` is functional.
 2015-06-11 13:51:53 -07:00
Alfredo Gimenez
afe3c5b6bb Mitos 0.9.1 2015-06-11 11:02:51 -07:00
Tom Scogland
cd581d1d5a adding package for the silver searcher 2015-06-10 14:24:38 -07:00
Tom Scogland
2d465ffd10 partial upgrade to vim package 2015-06-10 14:14:31 -07:00
Todd Gamblin
04bcf43649 Merge pull request #58 from trws/python-cffi 
Python cffi
 2015-06-10 00:36:37 -07:00
Todd Gamblin
874326a1ad Merge pull request #56 from trws/uuid-task-and-taskd 
package files for libuuid, needed for flux and taskwarrior packages
 2015-06-10 00:35:30 -07:00
Tom Scogland
c8ad456fd6 nettle depends on gmp, without it the nettle build fails on gcc 4.9.2 2015-06-09 19:37:42 -07:00
Tom Scogland
8839eeb421 new package files for python-cffi and its dependency pycparser 2015-06-09 19:36:08 -07:00
Tom Scogland
eab3d4811e package files for libuuid, needed for flux and taskwarrior packages, along with the taskwarrior packages 2015-06-09 19:26:49 -07:00
Todd Gamblin
e64c0f4e4e Fix Boost finding in Dyninst 8.2.1. 2015-06-09 17:48:38 -07:00
Todd Gamblin
bde9c7eee3 Upate ATLAS and netlib-blas. 2015-06-07 15:41:15 -07:00
Todd Gamblin
0570660d81 Make blas a virtual dependency, default netlib-blas. 2015-06-06 18:23:12 -07:00
Todd Gamblin
26b9592780 Add disablement of cpu throttle check. 2015-06-06 18:19:05 -07:00
Todd Gamblin
8b9dcfe635 Delete lapack/atlas combined package. 2015-06-06 18:18:51 -07:00
Todd Gamblin
5d94864b6c Rename netlib_blas -> netlib-blas 2015-06-06 18:18:44 -07:00
Todd Gamblin
50d7b3df2b Merge branch 'psaravan-fastmath' into features/fastmath 
Conflicts:
	var/spack/packages/lapack/package.py
 2015-06-06 18:17:59 -07:00
Todd Gamblin
8215c85619 Merge branch 'develop' into features/fastmath 2015-06-06 18:15:52 -07:00
Todd Gamblin
c43b5d670b Remove dummy fastmath package. 2015-06-06 17:48:33 -07:00
Todd Gamblin
b6ad37557f fix up Saravan's petsc install 2015-06-06 17:41:15 -07:00
Todd Gamblin
d266bf0184 Working Hypre, PARPACK. 2015-06-06 17:21:11 -07:00
Todd Gamblin
5294e2b9b9 CGM package working on cab. 2015-06-06 16:56:59 -07:00
Todd Gamblin
c5ab3f4e82 CBLAS package working and patching in spack compilers. 2015-06-06 16:29:37 -07:00
Todd Gamblin
f29fc5822b Working boxlib package. 2015-06-06 16:16:19 -07:00
Todd Gamblin
b9746de52e Working ARPACK package. 2015-06-06 15:26:54 -07:00
Todd Gamblin
03780ea105 Remove autosave files from saravan's PR 2015-06-06 15:26:54 -07:00
Todd Gamblin
422a75e4b8 Clean up arpack build, use the Spack f77 compiler. 2015-06-06 15:26:54 -07:00
Saravan Pantham
1f0246f970 Updated HDF5 to use MPI. 2015-06-06 15:26:43 -07:00
Saravan Pantham
9d71093500 Updated Zoltan. 2015-06-06 15:26:42 -07:00
Saravan Pantham
fd34f4b119 Added more FASTMath packages. 2015-06-06 15:26:38 -07:00
Saravan Pantham
c174fe6199 Fixed BLAS and Lapack installations 2015-06-06 15:26:31 -07:00
Saravan Pantham
d461aa3722 Added Lapack package 2015-06-06 13:06:18 -07:00
Saravan Pantham
a23e1579e3 Added BLAS package 2015-06-06 13:06:17 -07:00
Todd Gamblin
ab31f989db Merge Alfredo's Mitos changes from github with Greg's Python changes. 2015-06-06 12:53:28 -07:00
Gregory L. Lee
96ec75f7fe Merge branch 'develop' of ssh://cz-stash.llnl.gov:7999/scale/spack into develop 2015-06-04 15:49:57 -07:00
Gregory L. Lee
5ac5c021b8 new package versions 2015-06-04 15:49:55 -07:00
Alfredo Gimenez
dae33a31c0 Dyninst 8.2.1+ dependency for cmake 2015-06-03 22:02:47 -07:00
Alfredo Gimenez
15aee0de1a Mitos updated with new release 2015-06-03 21:58:44 -07:00
Gregory L. Lee
c4f5a881e6 new Python extensions 2015-06-03 10:08:07 -07:00
Gregory L. Lee
6dffe2ddd1 updated url 2015-06-03 10:07:21 -07:00
Gregory L. Lee
74b0a9c059 updated Python extension versions 2015-06-01 08:39:01 -07:00
Gregory L. Lee
83af842a74 fixed cython activation conflict 2015-06-01 08:38:32 -07:00
Todd Gamblin
f813d823a1 Merge branch 'features/optional-deps' into develop 
This includes:
- Much better variant support (+debug/-debug)
- Optional dependency support (depends_on(... , when='<condition>')
- New config file format (YAML in ~/.spack)
- New Spec format (YAML in $prefix/.spack/spec.yaml)
 2015-05-18 16:16:20 -07:00
Matthew LeGendre
46b91ddf57 YAML config files for compilers and mirrors 2015-05-18 16:01:21 -07:00
Gregory L. Lee
50970b72d8 added py-pandas 2015-05-12 13:47:48 -07:00
Todd Gamblin
cd5fa128c5 Work on SPACK-41: Optional dependencies work for simple conditions. 
- Can depend conditionally based on variant, compiler, arch, deps, etc
  - normalize() is not iterative yet: no chaining depends_ons
  - really need a SAT solver, but iterative will at least handle
    simple cases.

- Added "strict" option to Spec.satisfies()
  - strict checks that ALL of other's constraints are met (not just
    the ones self shares)
  - Consider splitting these out into two methods: could_satisfy() and
    satisfies()
    - didn't do this yet as it would require changing code that uses
      satisfies()

- Changed semantics of __contains__ to use strict satisfaction (SPACK-56)

- Added tests for optional dependencies.

- The constrain() method on Specs, compilers, versions, etc. now
  returns whether the spec changed as a result of the call.
 2015-05-12 09:56:59 -07:00
Todd Gamblin
ef9deeccd1 Merge branch 'features/yaml-spec' into features/optional-deps 2015-05-10 19:28:47 -07:00
Todd Gamblin
43e5465592 Fix bug in directory layout hidden files() 2015-05-10 17:56:27 -07:00
Todd Gamblin
3b1898b8e4 Fix SPACK-40: Finish adding variant directive. 
- Variants are now declarable in packages using the variant() directive.
- Variants are checked - you can't just ask for a random variant, it has to be declared.
- conditional logic (@when, if, '+debug' in spec, etc.) still required in package to
  implement variant.
 2015-05-10 12:24:03 -07:00
Cyrus Harrison
8c4fe6d249 added simple spack package files for uncrustify and cppcheck 2015-04-30 22:42:53 -07:00
Alfredo Gimenez
0f5b26c9cd MemAxes and Mitos 2015-04-09 14:46:33 -07:00
Todd Gamblin
37a5c3b09f Version bump for adept-utils 2015-04-01 00:05:26 -07:00
Matthew LeGendre
89731d4a7d Add binutils as a gcc dependency so it doesn't use the system linker/assembler. 2015-03-30 14:23:02 -07:00
Matthew LeGendre
50687e08cb Fix QT with gcc 4.9 build error where QT's -Wl,--no-undefined interfered with gcc's implicit libgcc_s.so library 2015-03-27 17:32:37 -07:00
Todd Gamblin
c10773503b Merge branch 'benjaminwalters-develop' into features/blas 
Conflicts:
	var/spack/packages/lapack/package.py
 2015-03-26 00:31:34 -07:00
Todd Gamblin
fa53bb835c Merge branch 'kev40293-develop' into features/blas 2015-03-26 00:12:41 -07:00