Commit graph

10795 commits

Author SHA1 Message Date
Massimiliano Culpo
f83d46bb79
intel: fixed version number (update4 is 18.0.5) (#15915)
fixes #15811

See https://software.intel.com/en-us/articles/intel-compiler-and-composer-update-version-numbers-to-compiler-version-number-mapping
2020-04-07 15:47:22 +02:00
Toyohisa Kameyama
ae94c52f1c
ppOpen-APPL/FEM: New package. (#15911)
* ppOpen-APPL/FEM: New package.

* typo fix.
Update patch.
2020-04-07 08:43:46 -05:00
Adam J. Stewart
783793426d
Package rename: DNNL -> oneDNN (#15910) 2020-04-06 19:27:34 -05:00
Matthias Diener
e7a529322f
fish: add version 3.1.0 and switch to cmake (#15812)
Versions < 3 do not support building with CMake.
2020-04-06 19:25:39 -05:00
Diego Magdaleno
2542d80e10
Update nano and fix coreutils on Darwin (#15883)
* Fixed building coreutils on Darwin

* Bump nano version to 4.9

* Coreutils: Add program prefix g so we don't conflict with Apple utilities

* Fix intendation

* Make format more spack like

* Removed unnecesary changes

* Merge branch 'develop' of github.com:DiegoMagdaleno/spack into develop

Fix linking libgit2 on Darwin

* Revert "Merge pull request #3 from spack/develop"

This reverts commit 58dbbdb82bfa4aa689758971eb423ae2b9d2c293, reversing
changes made to dd7a413f4870fc2778f801c882a50cfade18fe97.

* Revert "Revert "Merge pull request #3 from spack/develop""

This reverts commit f956aa7b135c39ea0eb4ba6b9329714067098a7c.

* Revert "Merge branch 'develop' of github.com:DiegoMagdaleno/spack into develop"

This reverts commit 50321f798674ec30d5c62fe696b4f8bccef6ab3d.
2020-04-06 19:23:05 -05:00
Andrew W Elble
6ad0ca27c2
new package: nccl-tests (#15890)
* new package: nccl-tests

* fix dependency types
2020-04-06 19:21:36 -05:00
Andrew W Elble
26a754c023
new package: py-tensorboard-plugin-wit (#15898)
* new package: py-tensorboard-plugin-wit

dependency for py-tensorboard >= 2.2.0

* incorporate feedback
2020-04-06 19:21:16 -05:00
Carson Woods
379319ee2d
pdt: add PIC support as variant (#15851)
* Add fPIC support as variant

* Fix variant to use compiler agnostic fPIC option
2020-04-06 16:20:21 -05:00
Andrew W Elble
9d906658b3
nccl: supports infiniband/RoCE since 2.3.5-5 (#15889)
loads libibverbs via dlopen(), add dependency on rdma-core
2020-04-06 16:19:55 -05:00
Andrew W Elble
ebd0b14ad1
new package: py-google-auth-oauthlib (#15900) 2020-04-06 16:10:43 -05:00
Adam J. Stewart
18a9a265fd
py-smart-open: fix url/checksum, add deps (#15892) 2020-04-06 11:16:20 -05:00
Dr. Christian Tacke
b1bea70df1
nanomsg: add new Package (#15894) 2020-04-06 11:15:57 -05:00
François Trahay
55d15fc07e
new packages: libbacktrace, libpfm, numap, numamma (#15868)
* new packages: libbacktrace, libpfm, numap, numamma

* numap: use the existing libpfm4 package

* formatting
2020-04-06 08:01:58 -05:00
Christoph Junghans
268c2a19da
boost: boost-python in 1.72.0 broken with cxxstd=98 (#15885)
* boost: boost-python in 1.72.0 broken with cxxstd=98

* py-espressopp: depend on boost with cxxstd=11
2020-04-05 18:42:27 -05:00
Adam J. Stewart
1249d73630
py-spatialist: add maintainer and new version, fix url and deps (#15878) 2020-04-05 17:31:09 -05:00
Adam J. Stewart
a08d5fed0a
py-flake8-polyfill: fix url and deps (#15872) 2020-04-05 15:45:29 -05:00
Adam J. Stewart
2a074ce445
py-gensim: fix url and deps, add maintainer (#15870) 2020-04-05 15:45:17 -05:00
Adam J. Stewart
638e6d0f9e
py-humanfriendly: add new version, fix url and deps (#15873) 2020-04-05 15:45:04 -05:00
Adam J. Stewart
e359bb91e9
py-pep8-naming: add new version, fix url and deps (#15874) 2020-04-05 15:44:50 -05:00
Adam J. Stewart
4dc034a8e5
py-progressbar2: add new version, fix url (#15875) 2020-04-05 15:44:36 -05:00
Adam J. Stewart
f5fde735b6
py-python-utils: add new version, fix url and deps (#15876) 2020-04-05 15:44:23 -05:00
Adam J. Stewart
d87f44e987
py-scoop: fix url and deps (#15877) 2020-04-05 15:44:10 -05:00
Adam J. Stewart
cf68193ebe
py-tblib: add new version, fix url and deps (#15879) 2020-04-05 15:43:20 -05:00
Adam J. Stewart
a3b9dbcbfb
package urls: pypi.org -> pypi.io (#15880) 2020-04-05 15:43:09 -05:00
Adam J. Stewart
68b4beb725
py-sphinx: add 3.0.0 (#15881) 2020-04-05 15:42:57 -05:00
Adam J. Stewart
05532f9e27
py-ecdsa: add new version, fix download url (#15871) 2020-04-05 15:42:44 -05:00
健美猞猁
34627fcbe5
py-pywcs: a new package. (#15826)
* py-pywcs: a new package.

* Fix a flake8 issue.

* Add missing dependencies.

* run -> build.

* Add version specifications.
2020-04-05 11:21:54 -05:00
François Trahay
c99a88128a
Version bump: eztrace-1.1-10 (#15866)
* version bump: eztrace-1.1-10

* 'trahay' is the maintainer for package 'eztrace'
2020-04-05 09:39:57 -05:00
Christoph Junghans
b4271d1a26
py-espressopp: pin py-numpy to py2 version (#15865) 2020-04-04 13:00:04 -05:00
darmac
7f8102d6d0
openjdk: support aarch64 platform (#15840) 2020-04-04 11:35:46 -05:00
Adam J. Stewart
9b9b46c0a9
Package rename: intel-mkl-dnn -> dnnl (#15852) 2020-04-04 11:35:23 -05:00
Nichols A. Romero
4ee9fd46bc
LLVM support for mlir (#15859) 2020-04-04 11:12:21 -05:00
Simon Pintarelli
4bb1392d7d
SIRIUS add version 6.5.1 and 6.5.2 (#15860) 2020-04-04 11:11:17 -05:00
健美猞猁
a7f418e0b2
Check if CPU family is x86_64. (#15862)
* Check if CPU family is x86_64.

* Remove the leading space.
2020-04-04 11:10:48 -05:00
Jennifer Herting
0891c5d854
New package: py-gluoncv (#15856)
* [py-gluoncv] created template

* [py-gluoncv] added description and homepage

* [py-gluoncv] added dependencies

* [py-gluoncv] unicode in readme is causing build to fail

* [py-gluoncv] cleaned up fixmes

* [py-gluoncv] removed unnecessary python dependency listing

* [py-gluoncv] added cython
2020-04-03 15:49:21 -05:00
G-Ragghianti
bf8fea1d53
Added support for new config process for papi@6:+lmsensors (#15858)
* Added support for new configuration process of lmsensors component for papi@6:

* Removed extraneous blank lines
2020-04-03 15:48:44 -05:00
Matthieu Dorier
4173c27868
unqlite: restricted patch to version 1.1.9 (#15857)
* restricted unqlite patch to version 1.1.9

* putting back the URL of the PR corresponding to the patch
2020-04-03 15:48:29 -05:00
Jennifer Herting
0a9d4f6720
New package: py-portalocker (#15854)
* [py-portalocker] Create template

* [py-portalocker] added homepage and description

* [py-portalocker] specified dependencies

* [py-portalocker] cleaned up fixmes

* [py-portalocker] removed unnecessary python dependency listing
2020-04-03 13:58:02 -05:00
G-Ragghianti
5e5b68c063
Papi package: updating with new bugfix version and variant (#15849)
* Added new variant "sde" to papi

* Updated papi with new version and new variant "sde"
2020-04-03 11:39:29 -05:00
Frédéric Simonis
be57c0f6e7
precice: Add version 2.0.2 (#15846) 2020-04-03 11:33:47 -05:00
Jennifer Herting
1461332e97
New package: libnotify (#15769)
* [libnotify] created template

* [libnotify] added homepage and description

* [libnotify] added dependencies

* [libnotify] patch location to docbook

* [libnotify] more dependency work

* [libnotify] reorder dependencies

* [libnotify] added variant docbook

* [libnotify] more accurate dependency version

* [libnotify] xsltproc still needed

* [libnotify] created test variant

* [libnotify] added gtkdoc varient

* [libnotify] cleaned up leftover fixme

* [libnotify] flake8

* [libnotify] test variant became self.run_tests

* [libnotify] pkgconfig is build dependency

* [libnotify] commented out broken variants

* [libnotify] flake8
2020-04-03 11:07:25 -05:00
健美猞猁
c0d2f70d02
py-stsci-distutils: new package at v0.3.8 (#15845) 2020-04-03 11:12:59 +02:00
Toyohisa Kameyama
87444aef7e
ppOpen-APPL/BEM-AT: added new package at v0.1.0 (#15841) 2020-04-03 11:11:46 +02:00
健美猞猁
e227a684b9
py-d2to1: added v0.2.12 (#15844) 2020-04-03 10:29:25 +02:00
Carson Woods
1662c3581b
pmix: add option for toggling pmi backwards compatibility (#15838)
* Add option for toggling pmi backwards compatibility

* Remove trailing whitespace
2020-04-02 21:09:33 -05:00
Jennifer Herting
1d14f74d19
New Package: py-astropy-helpers (#15658)
* [py-astropy-helpers] created template

* [py-astropy-helpers] - removed boilerplate - added homepage - added depends_on('py-astropy')

* [py-astropy-helpers] Setuptools versioning

* [py-astropy-helpers] cleaned up unused build_args method

* [py-astropy-helpers] py-astropy is a runtime dependency

* [py-astropy-helpers] requires python@3.6:

* [py-astropy-helpers] cleaned up unnecessary older versions

* [py-astropy-helpers] turns out py-astropy isn't actually a dependency
2020-04-02 20:11:48 -05:00
Shintaro Iwasaki
73ac853c3d
argobots: new version 1.0 (#15786) 2020-04-02 20:11:06 -05:00
Robert Mijakovic
37e9e450c9
Updates versions of Intel packages (#15839)
* update version: intel packages daal, ipp, mkl-dnn, mkl, mpi, parallel-studio, pin, tbb and makes url parameter consistent and always use single quote.

* Fixes a typo with one of the sha256 checksum..

* Adds version entries for new versions of Intel packages.

Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2020-04-02 19:39:44 -05:00
Carson Woods
0083c87c26
mpip: add demangling and setjmp variants (#15837)
* Add demangling to mpip

* Add setjmp support to mpip

* Flake8 fixes
2020-04-02 19:37:35 -05:00
Adam J. Stewart
4d2de863ef intel-mkl-dnn: add 1.3 2020-04-02 15:20:18 -07:00
Michael Kuhn
06ebb94f37 go: Add 1.14.1 and 1.13.9 2020-04-02 15:17:00 -07:00
Matthieu Dorier
8b52f9f37d
unqlite: Patching unqlite to be able to build a shared library (#15830)
* Patching unqlite to be able to build a shared library

* Correcting a whitespace for flake8 to pass

* added comment about PR on unqlite

* extra commit to force github to merge
2020-04-02 17:15:45 -05:00
iarspider
144557e945
c-blosc: Add variants to disable building tests and benchmarks (#15789)
* Add variants to disable building tests and benchmarks

* Flake8

* Update package.py

* Update package.py

* Update package.py
2020-04-02 08:52:37 -05:00
Toyohisa Kameyama
1f6f395337
ppOpen-APPL/BEM: added new package at v0.5.0 (#15819) 2020-04-02 12:08:09 +02:00
健美猞猁
d2b6ef98f1
py-pyfits: added new package at v3.5 (#15825) 2020-04-02 12:07:22 +02:00
健美猞猁
d921974db1
py-ephem: added new package at v3.7.71 (#15438) 2020-04-02 11:13:17 +02:00
Kelly (KT) Thompson
8078089914
cmake: added v3.17.0 (#15822) 2020-04-02 11:06:21 +02:00
Jonathon Anderson
7d44a0090d
cryptsetup: added v2.2.2, v2.2.3 and v2.3.1 (#15823)
Also confined the included patch to the earlier versions, as
indicated.
2020-04-02 10:55:20 +02:00
Jonathon Anderson
60f29a9f80
qt: added v5.14.2 (#15824) 2020-04-02 10:54:05 +02:00
Michael Bentley
c3c057f2b3
package: update flit and py-pyelftools versions (#15817)
* Update flit package to v2.1.0 and add dependencies

* flit: comment out bash dependency

The host system should have bash available and compiling bash through
spack failed for me.  I'm not sure if binutils and coreutils should
be listed as dependencies as well.

* Add new version of py-pyelftools

* py-pyelftools: add py-setuptools as a build dependency

* Address review comments
2020-04-01 22:05:58 -05:00
Carson Woods
bb0c79b504
package: add variants to cgns (#15816)
* Add additional configuration options for cgns

* Fix syntax errors

* Further syntax fixes

* Convert tabs to spaces

Co-authored-by: Carson Woods <carwood@sandia.gov>
2020-04-01 20:39:57 -05:00
Carson Woods
9b1820c2de
package: add static library build option for yaml-cpp (#15814)
* Add static build option

* Fix flake8 errors and standardize spacing of build commands

Co-authored-by: Carson Woods <carwood@sandia.gov>
2020-04-01 20:39:04 -05:00
takanori-ihara
814996eebc
New package:dhpmm-f (#15798)
* New package:dhpmm-f

* Remove unnecessary line
2020-04-01 20:38:09 -05:00
Todd Gamblin
5a814ad0c5
hdf5: prefer version 1.10 for now (#15810)
HDF5 1.12 broke backward compatibility, so we're preferring version 1.10
for now.  Packages that need the new API should specify:

    depends_on("hdf5@1.12:")

to be explicit. We can eventually change the preference, but at the
moment most libraries have not udpated to use the new HDF5.
2020-04-01 20:36:04 -05:00
Jonathon Anderson
e260eb4775
Version bump for slurm package (#15790) 2020-04-01 16:51:59 -05:00
Christoph Junghans
37c0039eb9
openssl: add v1.1.1f (#15802) 2020-04-01 13:57:19 -06:00
Erik Schnetter
8552efe54f
amrex: New version 20.04 (#15808) 2020-04-01 13:41:23 -05:00
Robert Pavel
47f135534c
Added v3 of Laghos (#15806)
* Added v3 of Laghos

Added v3 of Laghos as per
https://github.com/CEED/Laghos/blob/v3.0/README.md

* Update var/spack/repos/builtin/packages/laghos/package.py

Changed develop->master as per PR

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Made Metis Dependency Explicit

Added explicit metis dependency

* Folded @develop Laghos Deps in to @3.0:

Theoretically there will be a difference between develop and 3.0: in the
future but currently there is not

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-01 13:32:15 -05:00
Adam J. Stewart
64b14b64c0
OpenDX: add new package (#15737) 2020-04-01 13:30:03 -05:00
Robert Pavel
6ad717cc9d
Fixed Remaining Shared Objects in Static Lua (#15787)
Fixed removal of remaining references and symlinks to so files when
building lua with static libraries
2020-04-01 12:31:01 -05:00
Nichols A. Romero
917c0a0efd
Minor LLVM libomptarget fixes (#15788)
* Add myself as a maintainer

* This was a regression that occured in previous PR. Flang has been excised from LLVM for now until f18 is merged upstream.

* Libraries only needed when a GPU backend is present.
2020-04-01 12:28:36 -05:00
Sinan
67fbf257f0
Package/sfcgal fix typo (#15796)
* fix typo in dependency definition

* remove arbitrary dependency constraint

Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-04-01 12:05:53 -05:00
Andrew Gaspar
58cb2e5092
Add libgit2 1.0.0 and 0.28.5 (#15801) 2020-04-01 12:02:55 -05:00
Axel Huebl
c430ad91c3
pybind11 2.5.0: Include Change (#13905)
Add pybind11, version 2.5.0.
This release adds improved include helpers.
2020-04-01 08:58:09 -07:00
Sinan
49aa28790c
new package: py-spatialite (#12597)
* new package: py-spatialite

* make flake8 happy

Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-04-01 08:09:39 -05:00
Dr. Christian Tacke
97cfef320c
slurm: new version, system configuration path (#15466)
* Add version 18-08-9-1
* Add variant to allow setting the sysconfdir: See below

About sysconfdir:

slurm has a server and a client.
To use the correct communication channel, the client needs
to be able to read the correct config.  This config is in
PREFIX/etc.

Let's assume one has the server part installed as a system
package.  This generally is a good idea, so that the server
gets started during boot.  This means, that the config is
in /etc/slurm.

If one now wants to use the client part (library!) via
spack, one has a problem: spack's slurm looks in
SPACK-PACKAGE-PREFIX/etc for the config.

There needs to be a way to let the spack installed package
use the system's config.

So add a variant to override the path during build:
sysconfdir=/etc/slurm.

This is much like what happened in #15307 for munge.
2020-04-01 08:07:41 -05:00
Phil Tooley
315faf8b77
Extrae: update package shasum and binutils version (#15516)
Co-authored-by: telemin <telemin@protonmail.ch>
2020-03-31 16:14:43 -07:00
Adam J. Stewart
8748160984
GMT: add 6.0.0 (#15785) 2020-03-31 15:44:17 -05:00
Adam J. Stewart
25a65638ff
autoconf-archive: add new package (#15782) 2020-03-31 13:02:20 -05:00
Adam J. Stewart
663c3d21b5
JasPer: add 2.0.16 (#15781) 2020-03-31 12:08:26 -05:00
Ben Morgan
77e1384902
geant4: new version 10.6 plus simplifications (#15447)
* geant4: new version 10.6 plus simplifications

Add new 10.6.0 release, migrating download of source to use Geant4's
public release repo on CERN GitLab. Change versioning scheme to use
clearer and standard semantic scheme.

Update geant4-data and g4XXX data packages with new versions. Migrate
geant4-data as a BundlePackage of the g4XXX packages, installing links
to each under a single directory under share for geant4-data. Ensure
each g4XXX package exports the environment variable pointing to its
location expected by Geant4.

Remove "data" variant from Geant4 package and always use geant4-data.

Simplify cxxstd variant transport to dependencies.

* g4<DATA>: Use self to resolve correct prefix

* geant4, data: Fix flake8 errors

* g4photonevaporation: flake8 fix

* geant4: vecgeom version depends_on

Geant4 major.minor versions have specific dependencies on vecgeom
versions. Add missing vecgeom version for geant4 10.5, and match
version requirements for vecgeom in geant4 depends_on.

* geant4: c++17 patch specific for 10.4.3

* geant4: simplify geant4-data setup

* geant4: Use new define_from_variant function

* geant4: fix flake8 errors
2020-03-31 09:54:31 +01:00
Toyohisa Kameyama
628516c761
ppOpen-APPL/FVM: new package. (#15772)
* ppOpen-APPL/FVM: new package.

* copy_tree -> install_tree.
2020-03-30 23:02:14 -05:00
Satish Balay
864960937d
superlu-dist: add new version 6.3.0 (#15766) 2020-03-30 19:52:31 -05:00
Ryan Mast
8bc6b290e5
helics: add new package (#15763)
* helics: add new package

* Remove FIXME boilerplate

* Use open @master: verison range for git dependency and remove mpi fix branch version

* Add blank line after spack import
2020-03-30 19:50:53 -05:00
Satish Balay
a96b742797
Balay/petsc 3.13.0 (#15767)
* petsc: add 3.13.0 (using petsc-lite) and 3.12.5

* petsc@3.13.0: update hdf5 and superlu-dist dependencies

* flake8 fix

* fixes for comments

Co-authored-by: Jed Brown <jed@jedbrown.org>
2020-03-30 19:50:29 -05:00
Adam J. Stewart
3c18d2a0e8
py-torch: make sure unit tests are registered (#15765) 2020-03-30 17:44:58 -05:00
Adam J. Stewart
ccc7c9b86d
py-horovod: fix compilation of ~cuda (#15719)
* py-horovod: fix compilation of ~cuda

* Rewrite py-horovod with only 3 variants

* Add upstream patch to workaround compilation issue
2020-03-30 16:09:17 -05:00
Andrew W Elble
6747ecde16
py-onnx: depends on cmake >= 3.1 (#15762)
* py-onnx: depends on cmake >= 3.1

* Update var/spack/repos/builtin/packages/py-onnx/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-03-30 14:58:57 -05:00
Amjad Kotobi
0c7fff6065
Update git version to 2.26.0 (#15756)
* Update git version to 2.26.0

* Fix1
2020-03-30 11:56:40 -05:00
Robert Pavel
8d1e88658d
Aded Option to Disable Shared Lua library Generation (#15758)
* Aded Option to Disable Shared Lua library

Added option to disable generation of shared object library for lua to
avoid build issues on static only platforms

* Fixed Flake8 Issue with Lua Spackage

Fixed indentation issue with lua spackage
2020-03-30 11:56:23 -05:00
Hadrien G
abdada03a8
Add ACTS v0.20 and take move to GitHub into account (#15757) 2020-03-30 16:48:36 +01:00
Fabian Brandt
605b7b5d23
New package: libnetworkit (#15714)
* New package libnetworkit

* Fixed artificial dependency restriction
2020-03-30 08:17:21 -05:00
Carson Woods
e9d573d110
package: add additional configuration options to lmod (#15682)
* Add further configuration options

* Convert auto-swap to auto_swap. Might eventually switch to key-value pair instead.
2020-03-30 08:14:07 -05:00
Carson Woods
05b7ec48c5
Add additional config options to gdb (#15754) 2020-03-29 23:05:24 -05:00
Carson Woods
3cbc26cfa6
Add additional configuration options for binutils (#15753) 2020-03-29 23:05:11 -05:00
Adam J. Stewart
757d768a07
py-mayavi: add new package (#15751) 2020-03-29 21:11:13 -05:00
Adam J. Stewart
7bed5e7c1a
py-envisage: add new package (#15748) 2020-03-29 20:41:24 -05:00
Adam J. Stewart
0372582bf0
py-apptools: add new package (#15747) 2020-03-29 20:08:52 -05:00
Carson Woods
61c1322430
new package: intel-mpi-benchmarks (#15745)
* Add initial attempt at intel-mpi-benchmarks package

* Add more checksummed versions

* Changes to how makefile is handled

* First working install version. Needs tuning to support building specific benchmarks

* Add variant for building specific benchmarks rather than all of them

* Minor syntax change
2020-03-29 19:46:16 -05:00
Adam J. Stewart
17cd359ddf
py-traitsui: add new package (#15744) 2020-03-29 19:38:02 -05:00