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Author SHA1 Message Date
Nikolay Simakov
12078382b6
Added HPC Challenge Benchmark (#18323) 
* HPCC Benchmark: added HPC Challenge (HPCC) benchmark

* HPCC Benchmark: modified error message on lack of fftw2 interface in MKL

* hpcc: fixed styling add one more installation example

* hpcc: styling fix

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* hpcc: changed include and lib location setter

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* hpcc: fixed styling add one more installation example

* hpcc: removed readme.md

* hpcc: develop repo now is in github

* hpcc: march arguments are set explicitly in case of intel compilers, added -restrict flag, which needed for older intel compilers (at least <=19.0.5.281)

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-09-01 09:59:06 -05:00
ketsubouchi
3a5746c6c7
orbit2: new package at v2.14.19 (#18405) 2020-09-01 13:11:55 +02:00
darmac
3701633937
fuse-overlayfs: added new package at v1.1.2 (#18435) 2020-09-01 08:28:27 +02:00
Joseph Wang
ebeb8fb8df
ocaml: allow v4.08 and v4.09 to build with gcc10 (#18254) 
fixes #18228.  

This patch doesn't cover all old versions but it allows packages like whizard to build.
 2020-09-01 05:53:13 +02:00
Sinan
1c67a304c8
py-tpot: added new package at v0.11.5 (#18385) 
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Sinan81 <Sinan81@earth>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-09-01 05:51:23 +02:00
Xavier Delaruelle
efff025787
environment-modules: added v4.5.3 (#18425) 2020-09-01 05:46:13 +02:00
Brian Van Essen
28ef5c0e27
dihydrogen, hydrogen: dependency on CUB is conditional on CUDA version (#18427) 
In CUDA 11, CUB is integrated into the CUDA library.
 2020-09-01 05:42:21 +02:00
Tim Haines
7926f84022
elfutils: add support for debuginfod (#18227) 2020-09-01 05:35:18 +02:00
Jeffrey Salmond
9b6c2e80fe
py-llvmlite: added v0.34 (#18432) 2020-09-01 05:33:27 +02:00
Toyohisa Kameyama
b2d2bb694e
openfoam: delete print to screen and updated docstrings/comments (#17985) 2020-09-01 05:31:49 +02:00
darmac
49b47864e9
libpam: added new package at v1.0.9 (#18418) 2020-09-01 05:19:48 +02:00
MichaelLaufer
16e3e28cc8
new package: wrf (#18398) 
* wrf: new package

* wrf: fix install dir

* wrf: ndown location

* Add more compiler and nesting options to wrf package

* Fix configure that didn't find pgf90, use tempfile and compile in parallel

* WRF v4.2 with parallel I/O support through pnetcdf

Signed-off-by: michael laufer <michael.laufer@toganetworks.com>

* extend Package, compiler wrapper now used, small fixes

Signed-off-by: michael laufer <michael.laufer@toganetworks.com>

* Update var/spack/repos/builtin/packages/wrf/package.py

fixed typo

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Levi Baber <baberlevi@gmail.com>
Co-authored-by: eXact lab <info@exact-lab.it>
Co-authored-by: michael laufer <michael.laufer@toganetworks.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-08-31 20:38:36 -05:00
Howard Pritchard
712d80955b
OPENMPI: add 4.0.5 (#18332) 
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2020-08-31 20:38:06 -05:00
Julien Loiseau
2d718b56ca
Update package.py (#18426) 
Correct boost version to match flecsi
 2020-08-31 17:09:39 -06:00
Sinan
e7447f266a
new package: py-update-checker (#18396) 
* new package: py-update-checker

* add test deps

* Update var/spack/repos/builtin/packages/py-update-checker/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-update-checker/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-update-checker/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* remove lint stuff.

Co-authored-by: Sinan81 <Sinan81@earth>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-08-31 15:50:21 -05:00
Jen Herting
bc93632c06
New package: py-torch-sparse (#18270) 
* [py-torch-sparse] created template

* [py-torch-sparse] added dependencies

* [py-torch-sparse] extends py-torch-scatter

* [py-torch-sparse] added variant cuda and setting env vars

* [py-torch-sparse] added homepage and description. removed fixmes

* [py-torch-sparse] flake8

* [py-torch-sparse] added variant description

* [py-torch-sparse] extends -> depends on

* [py-torch-sparse] added dependencies of py-setuptools and py-pytest-runner
 2020-08-31 15:43:30 -05:00
Harmen Stoppels
7c9fe7bcbd
Add more cmake patch versions (#18422) 2020-08-31 10:52:18 -05:00
ketsubouchi
fc251e62d1
new package: dbus-glib (#18400) 2020-08-31 10:52:01 -05:00
darmac
3287050226
Add new package: dosfstools (#18410) 2020-08-31 10:49:50 -05:00
darmac
0d08071e95
Add new package: tesseract (#18411) 2020-08-31 10:49:05 -05:00
darmac
b2e1036316
Add new package: fipscheck (#18412) 2020-08-31 10:48:34 -05:00
darmac
1d54eb3fee
Add new package: libfuse (#18413) 2020-08-31 10:48:10 -05:00
darmac
7ba20239fb
Add new package: hardlink (#18414) 2020-08-31 10:47:46 -05:00
darmac
b8bf34b348
Add new package: libhbaapi (#18415) 2020-08-31 10:47:14 -05:00
darmac
ecc7f19177
Add new package: jimtcl (#18416) 2020-08-31 10:46:48 -05:00
Xavier Delaruelle
7036f41ea5
environment-modules: fix version 4.5.2 install (#18421) 
`configure` script of Modules 4.5.2 is a bit too strict and breaks when
special options like `--disable-dependency-tracking` are set. This issue
will be fixed on Modules project starting version 4.5.3
(cea-hpc/modules#354).

This change adapts `configure` options set when installing version 4.5.2
to avoid options unrecognized on this version.

Fix #18420
 2020-08-31 10:43:31 -05:00
Toyohisa Kameyama
97f7378097
neovim: build on aarch64 (#18136) 
* libvterm: renumber version and add 1.0.3
neovim: build on aarrch64

* Remove unneeded comment.

* libvterm:   newer bazaar snapshot version is set to version 0.0.
neovim: change for libvterm version change, and libtermkey version bug is fixed.

* update libvterm versions.
 2020-08-31 10:31:41 -05:00
darmac
c4e966f162
Add new package: byte-unixbench (#18257) 
* Add new package: byte-unixbench

* refine install flow

* Update var/spack/repos/builtin/packages/byte-unixbench/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-08-31 10:28:53 -05:00
t-nojiri
b0a1a7e9aa
cp2k: Add depend on libxc@4.3.4. (#18346) 
* cp2k: Add depend on libxc@4.3.4.

* cp2k: The fix of depend of libxc@4.3.4 was redone.
 2020-08-31 10:27:23 -05:00
Jen Herting
122a4719ca
New packages: py-torch-cluster (#18262) 
* [py-torch-cluster] created template

* [py-torch-cluster] added dependencies

* [py-torch-cluster] setting TORCH_CUDA_ARCH_LIST

* [py-torch-cluster] limited extends

* [py-torch-cluster] depends on scipy

* [py-torch-cluster] added variant cuda and set env vars

* [py-torch-cluster] added homepage and description. removed fixmes

* [py-torch-cluster] flake8

* [py-torch-cluster] switched to depends_on from extends.

* [py-torch-cluster] added variant description

* [py-torch-cluster] added py-setuptools and py-pytest-runner as dependencies
 2020-08-31 10:11:53 -05:00
Jen Herting
f659927938
New package: py-torch-scatter (#18263) 
* [py-torch-scatter] created template

* [py-torch-scatter] listed specific version of python

* [py-torch-scatter] extends py-torch

* [py-torch-scatter] setting TORCH_CUDA_ARCH_LIST

* [py-torch-scatter] setting more environemnt variables and added variant cuda

* [py-torch-scatter] added homepage and description. removed fixmes

* [py-torch-scatter] flake8

* [py-torch-scatter] Added variant description

* [py-torch-scatter] extends -> depends_on

* [py-torch-scatter] added dependencies of setup tools and pytest-runner
 2020-08-31 10:11:00 -05:00
Jen Herting
47ef8d9deb
New package: py-torch-spline-conv (#18273) 
* [py-torch-spline-conv] created template

* [py-torch-spline-conv] specified version of python

* [py-torch-spline-conv] extends py-torch-cluster

* [py-torch-spline-conv] setting TORCH_CUDA_ARCH_LIST

* [py-torch-spline-conv] limiting extension to py-torch

* [py-torch-spline-conv] added cuda variant and setting env vars

* [py-torch-spline-conv] added homepage and description. removed fixmes

* [py-torch-spline-conv] added variant cuda

* [py-torch-spline-conv] flake8

* [py-torch-spline-conv] added variant description

* [py-torch-spline-conv] extends -> depends_on

* [py-torch-spline-conv] added dependencies py-setuptools and py-pytorch-runner
 2020-08-31 10:10:21 -05:00
Adam J. Stewart
f4a37b2dc2
Remove unmatched triple quotes (#18272) 2020-08-31 13:05:07 +02:00
Weston Ortiz
86eac24f36
trilinos: added v13.0.0 and PYTHONPATH for exodus.py (#18266) 2020-08-31 12:56:37 +02:00
Dr. Christian Tacke
18fde34d38
singularity: added v3.6.2 (#18353) 2020-08-31 12:21:08 +02:00
Dr. Christian Tacke
c07204d661
glew: added v2.1.0 (#18394) 2020-08-31 11:48:46 +02:00
srekolam
d73db33005
atmi,rocgdb,rocm-dbgapi changes for rocm3.7 (#18404) 2020-08-31 11:36:38 +02:00
ketsubouchi
06ad858be2
libidl: added new package at v0.8.14 (#18403) 2020-08-31 11:34:11 +02:00
Sinan
3a0d273dae
py-py6s: added new package at v1.8.0 (#18407) 
Co-authored-by: Sinan81 <Sinan81@earth>
 2020-08-31 11:30:22 +02:00
h-denpo
55f490b093
lesstif: added dependency on 'libxext' (#18408) 2020-08-31 11:12:48 +02:00
darmac
1fdaffed3f
minizip: support minizip and miniunz building (#17925) 
* minizip: support minizip and miniunz building

* minizip: remove comment

* refine build flow
 2020-08-30 22:22:48 -05:00
Toyohisa Kameyama
7f9018e893
lua-luajit: remove duplicated lua-jit and merge to lua-luajit. (#18348) 2020-08-30 19:16:53 -05:00
Sinan
665e5ce0fd
new package: py-planet (#18377) 
* new package: py-planet

* flake8

* specify checksum type

* improve dependency specs

* specify dependency

* add test dependencies

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Sinan81 <Sinan81@earth>
 2020-08-30 10:45:17 -05:00
Sinan
06b551f98e
new package: py-deap (#18378) 
* new package: py-deap

* flake8

* fix sha sum

* add missing dependency

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Sinan81 <Sinan81@earth>
 2020-08-30 10:44:43 -05:00
Sinan
855e77036e
new package: py-pypeg2 (#18379) 
* new package: py-pypeg2

* add missing dependency

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Sinan81 <Sinan81@earth>
 2020-08-30 10:44:21 -05:00
Sinan
a43dc51551
new package: py-pysolar (#18380) 
* new package: py-pysolar

* latest version depends on python@3, flake8

* add missing dependencies

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Sinan81 <Sinan81@earth>
 2020-08-30 10:43:54 -05:00
Sinan
376d6119ce
new package: py-rios (#18381) 
* new package: py-rios

* flake8

* Update var/spack/repos/builtin/packages/py-rios/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-08-30 10:43:26 -05:00
Sinan
fc6cf29f0f
new package: py-ssmap (#18383) 
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
 2020-08-29 15:50:59 -05:00
Sinan
884e707810
new package: py-stopit (#18384) 
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
 2020-08-29 15:50:07 -05:00
vvolkl
a475ef20dd
[heppdt] fix broken url (#18388) 2020-08-29 15:43:27 -05:00
darmac
89df727e5f
Add new pacakge: termcap (#18389) 2020-08-29 15:42:51 -05:00
darmac
e9ea8d1e81
Add new package: wrk (#18390) 2020-08-29 15:42:19 -05:00
darmac
66e006608a
Add new package: cgdcbxd (#18391) 2020-08-29 15:41:52 -05:00
Wouter Deconinck
49df20f1ef
[libdrm] AutotoolsPackage; %gcc@10.0.0 requires CFLAGS=-fcommon (#18393) 
* [libdrm] AutotoolsPackage; %gcc@10.0.0 requires CFLAGS=-fcommon

* [libdrm] placate flake8
 2020-08-29 15:39:02 -05:00
darmac
586fbe05b5
Bcache (#18103) 
* bcache:add pkg-config to find blkid.h in linux-utils

* bcache: fix libuuid race condition in pkgconfig
 2020-08-29 11:54:46 -05:00
darmac
b4042f23d0
Add new package: re2 (#18302) 
* Add new package: re2

* re2: refine versions
 2020-08-29 11:53:29 -05:00
darmac
cf170b5ff1
Add new package: varnish-cache (#18258) 
* Add new package: varnish-cache

* Add dependency: python
 2020-08-29 11:52:09 -05:00
darmac
8b212c7845
Add new package: leptonica (#18306) 
* Add new package: leptonica

* Update var/spack/repos/builtin/packages/leptonica/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-08-29 11:51:41 -05:00
Christoph Junghans
2204ba18b5
flexiblas: initial add (#18364) 
* flexiblas: initial add

* Update package.py
 2020-08-29 09:48:48 -06:00
darmac
e58c7af1a3
Add new package: weighttp (#18255) 2020-08-28 23:12:56 -05:00
darmac
e19f971b7b
Add new package: librdkafka (#18256) 2020-08-28 23:12:32 -05:00
srekolam
6739908144
mathlibs- rocrand recipe for amd rocm-3.5.0 release (#18283) 
* mathlibs- rocrand recipe for amd rocm-3.5.0 release

* fixing review comments
 2020-08-28 23:11:46 -05:00
Andrew W Elble
4b649b2d2b
py-spacy: new version 2.3.2 (#18294) 
* py-spacy: new version 2.3.2

update en-core-web-sm to @2.3.1
add en-vectors-web-lg@2.3.0

* update deps

* wasabi

Co-authored-by: Andrew Elble <aweits@localhost.localdomain>
 2020-08-28 23:11:13 -05:00
Andrew W Elble
d08d0f2732
new package: qcachegrind@20.08.0 (#18295) 
Co-authored-by: Andrew Elble <aweits@localhost.localdomain>
 2020-08-28 23:10:58 -05:00
darmac
654f52bc08
Add new package: rinetd (#18303) 2020-08-28 23:06:04 -05:00
darmac
a206d2aebd
Add new package: rsyslog (#18304) 2020-08-28 23:05:30 -05:00
darmac
50d7467715
Add new package: tengine (#18305) 2020-08-28 23:04:48 -05:00
darmac
e09d906a35
Add new package: fastdb (#18308) 2020-08-28 23:03:30 -05:00
vvolkl
62128f1351
[whizard] update ocaml dependency (#18309) 
up
 2020-08-28 23:02:45 -05:00
darmac
2c155d4fe2
Add new package: sysbench (#18310) 2020-08-28 23:02:11 -05:00
darmac
d5da8e7543
Add new package: foundationdb (#18312) 2020-08-28 22:59:28 -05:00
darmac
eaf843c3e8
Add new package: pflask (#18313) 2020-08-28 22:58:54 -05:00
darmac
a1230d1910
Add new package: shc (#18314) 2020-08-28 22:58:29 -05:00
darmac
b799b983bb
Add new package: vsftpd (#18317) 2020-08-28 22:55:44 -05:00
darmac
0eeed1f7f7
Add new package: iniparser (#18318) 2020-08-28 22:53:57 -05:00
darmac
c85dc3a5b4
Add new package: fcgi (#18320) 2020-08-28 22:51:03 -05:00
darmac
6113be0919
Add new package: faust (#18321) 2020-08-28 22:50:05 -05:00
Kelly (KT) Thompson
48bfffd32c
[new version] Draco package (#18336) 
* Update version for package Draco

+ Add support for `draco-7.7.0`.
  + Introduces new `+cuda` variant.  This variant is only allowed in version
    `7.7.0:`.
  + Restrict `random123` to compatible versions.
  + Restrict `libquo` to compatible versions.
  + Moving forward, require `python@3:`
  + Moving forward, the ``+superlu_dist` variant is not longer supported.
+ Improve printed output for `--test` mode by adding `ctest` option
  `--output-on-failure`
+ Provide a patch to support for IBM Spectrum-MPI in version `7.7.0:`
+ Provide a patch to allow variant `~cuda` to actually disable GPU portions of
  the code when a GPU is discovered on the local system.

* Remove unnecessary function decoration.
 2020-08-28 22:42:15 -05:00
Chris Richardson
25021ec228
Add setuptools as a direct dependency (#18324) 2020-08-28 16:24:43 -05:00
Gabriel Rockefeller
8a408a6571
eospac: add versions 6.4.1alpha.2 and 6.4.1beta (#18329) 2020-08-28 16:23:30 -05:00
Rémi Lacroix
b27cd9d75d
NetCDF-Fortran: Add version 4.5.3. (#18350) 2020-08-28 16:22:42 -05:00
Robert Blake
eb8ff0bc81
Adding externals for bison and flex (#18358) 
* Adding externals for bison and flex

Added because bison actually pulls in a ton of stuff.

* Need to escape parentheses.

* Need to add re package.

* Adding re package.
 2020-08-28 16:22:28 -05:00
Robert Blake
aca370a3a2
External recognition for find. (#18360) 
* External recognition for find.

* Adding re package.
 2020-08-28 16:22:05 -05:00
Robert Blake
c9fd2983dc
texinfo: Adding external support (#18362) 
* texinfo: Adding external support for texinfo.

* Adding re package.
 2020-08-28 16:21:51 -05:00
Dr. Christian Tacke
65fda72d7c
davix: Improve shared library building on macOS (#18352) 
Add -DCMAKE_MACOSX_RPATH=ON to cmake.
 2020-08-28 16:13:53 -05:00
Keita Iwabuchi
9525c530d5
Add Metall v0.3 (#18340) 
* Metall: add version 0.2

* Add Metall v0.3
 2020-08-28 14:42:02 -05:00
Jonathan R. Madsen
0bf696a29d
Timemory: Fix python dependencies + NCCL (#18342) 
* Fix python dependencies + NCCL

* Removed trailing whitespace
 2020-08-28 14:40:34 -05:00
Dr. Christian Tacke
6bb2dd40b6
fairlogger: Update cmake options and version (#18354) 
* Add version 1.7.0 and 1.8.0
* Better support for boost < 1.70
* No color in output
 2020-08-28 14:31:09 -05:00
Nikolay Simakov
9b654fe60c
namd: added patching charmrun location, as it stored in prefix.bin (#18355) 2020-08-28 14:29:53 -05:00
Robert Blake
6ceb3d4be0
spectrum-mpi: external support, compiler detection (#18055) 
* spectrum-mpi: adding external support.

* Package is tested, works on LLNL lassen

* Spectrum external now detects the correct compiler

* Changing code to not output all compilers

Done per becker33's request on #18055
 2020-08-28 11:53:27 -07:00
eugeneswalker
9befc43708
binutils: add build dep: diffutils (provides cmp) (#18361) 2020-08-28 11:31:43 -07:00
Rémi Lacroix
b006123331
Add new package: AutoDock-GPU. (#17808) 
The project currently only has a develop branch and no versioned releases so only provide a git-based "develop" version.
 2020-08-28 11:02:52 -05:00
ketsubouchi
1d0650b2cb
looptools: skip UNDERSCORE check and add -Fwide (#18135) 2020-08-28 10:03:38 -05:00
ketsubouchi
abffcefadd
genometools: use signed char for %fj (#18126) 
* genometools: use signed char for %fj

* genometools: update patch to use int

* use int
 2020-08-28 10:02:42 -05:00
ketsubouchi
7dd58c7ed0
ghostscript: patched sources to allow building with Fujitsu compilers (#18345) 2020-08-28 11:52:11 +02:00
ajw1980
1251919318
Add type=link for libxml2 and libxslt for py-lxml (#18293) and add version 4.5.2 (#18325) 
Co-authored-by: Andy Wettstein <andy.wettstein@xrtrading.com>
 2020-08-27 15:03:23 -05:00
Hector
9f5d0c0007
Fix Zoltan installation with gcc 10.2.0 (#18301) 2020-08-27 20:57:53 +02:00
Andrew W Elble
77a28b81ac
thrift: add missing py-six dependency (#18285) 
* thrift: add missing py-six dependency

* add more missing dependencies (+extras)

* small fix

* gssapi variant / setuptools run dep

Co-authored-by: Andrew Elble <aweits@localhost.localdomain>
 2020-08-27 13:24:42 -05:00
psakievich
ccae9cff3a
Add nalu-wind test structure (#13640) 
- Add custom function to checkout submoudles if testing is enabled
 2020-08-27 12:09:56 -05:00
Chen Wang
680c1b339a
New version: Recorder 2.1.5 (#18327) 2020-08-27 11:55:04 -05:00