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Author SHA1 Message Date
Matthew LeGendre
987cd9e78f Update docs for YAML configuration files and preferred concretization 2015-10-05 11:36:06 -07:00
Matthew LeGendre
ee68a76a19 Bug fixes from testing spack preferred packages 2015-10-05 11:36:06 -07:00
Matthew LeGendre
8d7b7e5d5d Use preferred package rules when concretize'ing specs 2015-10-05 11:36:06 -07:00
Matthew LeGendre
b5c597b318 Allow specs to be sorted based on preferred packages, versions, compilers, variants and dependencies. 2015-10-05 11:36:05 -07:00
Matthew LeGendre
59f89dd3be Allow long names in format string variables 2015-10-05 11:36:05 -07:00
Mario Melara
75d30b08fb Added current version 3.2 of libffi version 3.1 has a bug that interferes with glib 2015-10-01 21:51:55 -07:00
Todd Gamblin
cc6252cdfa Merge pull request #118 from scalability-llnl/features/scr 
update scr to 1.1.8
 2015-09-29 18:21:37 -07:00
Adam Moody
5563c66675 update scr to 1.1.8 2015-09-29 18:18:34 -07:00
Gregory Becker
5fda7daf57 an ordered database test 2015-09-27 17:54:24 -07:00
Todd Gamblin
dd21a01dc4 Merge pull request #116 from mamelara/develop 
Added samtools bioinformatics software
 2015-09-27 17:29:50 -07:00
Todd Gamblin
8818f4ac5e Remove enabled variants from install prefix. 
- these make the prefix too long in many cases.
- users can figure out which install is which by querying.
 2015-09-27 17:01:35 -07:00
Todd Gamblin
adbd393c39 Remove special characters (@, %, +, ~, etc) from stage name 2015-09-27 17:01:35 -07:00
Mario Melara
13eb461ec3 Adding bowtie2 package along with patch 2015-09-24 11:21:54 -07:00
Mario Melara
521632b3dc Added samtools bioinformatics software 2015-09-23 16:30:44 -07:00
Todd Gamblin
6d4eed3845 Merge pull request #102 from RasmusWL/features/fish 
Add fish (shell) package
 2015-09-23 01:37:59 -07:00
Todd Gamblin
82ea7aec51 Merge pull request #106 from justintoo/add-package-doxygen 
(Package) Add Doxygen (v1.8.10)
 2015-09-23 01:37:31 -07:00
Todd Gamblin
d474eeb424 Merge pull request #110 from scalability-llnl/features/boostupdate 
update boost package for new releases
 2015-09-23 00:32:22 -07:00
Todd Gamblin
5d6baacc56 Merge pull request #111 from scalability-llnl/features/protobuf 
add protobuf package
 2015-09-23 00:31:26 -07:00
Todd Gamblin
46cf0a23d9 Merge pull request #112 from scalability-llnl/features/glog 
add glog package
 2015-09-23 00:30:37 -07:00
Todd Gamblin
f02af701e5 Merge pull request #113 from scalability-llnl/features/gflags 
add gflags package
 2015-09-23 00:29:50 -07:00
Todd Gamblin
5f826a0ab7 Merge pull request #114 from scalability-llnl/features/snappy 
Features/snappy
 2015-09-23 00:27:27 -07:00
Todd Gamblin
ba83dd56a1 Merge pull request #115 from scalability-llnl/features/lmdb 
add lmdb package
 2015-09-23 00:21:22 -07:00
Adam Moody
84823ed828 add lmdb package 2015-09-22 12:17:01 -07:00
Adam Moody
3ade141829 add leveldb package 2015-09-22 11:59:09 -07:00
Adam Moody
30acc6f2f0 add snappy package 2015-09-21 16:45:59 -07:00
Adam Moody
22ba02b22b add gflags package 2015-09-21 16:40:23 -07:00
Adam Moody
b5d7cd55ce add glog package 2015-09-21 16:30:11 -07:00
Adam Moody
e4e22ed17e add protobuf package 2015-09-21 16:19:50 -07:00
Justin Too
3691201b4f (Package) Add Spot C++ library (v1.99.3) 2015-09-21 11:04:56 -07:00
Todd Gamblin
d0e22b2240 Add ref counting to database. This does not handle removal properly yet. 2015-09-18 11:40:05 -07:00
Todd Gamblin
fb73979345 Allow custom timeout for database locking. 2015-09-17 16:09:59 -07:00
Todd Gamblin
e17ad6a684 Simplify lock context managers. 2015-09-17 01:05:19 -07:00
Todd Gamblin
6dff42be09 WIP for Matt's branch 2015-09-17 00:21:33 -07:00
Todd Gamblin
ccf311c9c6 Several changes to DB implementation. 
1. Database stores a file version, so we can add to it in the future.
2. Database indexed by hashes and not numerical indexes.
3. Specs built by database have consistent hashes and it's checked.
4. minor naming and whitespace changes.
 2015-09-17 00:16:12 -07:00
Gregory Becker
cd23d2eaa2 Added spack fsck and re-read from glob if the database file does not exist. Allows older versions to smoothly upgrade to the database. 2015-09-15 14:20:19 -07:00
Justin Too
99ca0f3153 (Package) Add Doxygen (v1.8.10) 2015-09-11 20:29:18 +00:00
Rasmus Wriedt Larsen
b06117f77a Add fish (shell) package 2015-09-03 14:19:27 -07:00
Gregory Becker
9c8e46dc22 Added conservative locking to the spack commands that access the database at _index 2015-09-03 09:21:19 -07:00
Adam Moody
ac088bae6a update boost 2015-09-01 16:02:14 -07:00
Gregory Becker
c3246ee8ba Removed incorrect stage removal code from cleanup() in do_install() 2015-08-31 09:46:55 -07:00
Gregory Becker
f406fcb843 Fixed several issues from code review 
Most importantly wrote the Lock, Read_Lock_Instance, and Write_Lock_Instance classes in lock.py
Updated the locking in database.py
TODO: Lock on larger areas
 2015-08-31 09:38:38 -07:00
Todd Gamblin
c5c9ada7b0 Fix for GitHub #95 
develop: compiler clang@unknown created for /usr/bin/clang-format
https://github.com/scalability-llnl/spack/issues/95
 2015-08-27 02:04:58 -07:00
Todd Gamblin
6af49d41fd Add elfutils. 2015-08-27 00:10:53 -07:00
Todd Gamblin
13fd742610 Merge branch 'features/pidx' into develop 2015-08-26 23:48:52 -07:00
Todd Gamblin
babbc5bb45 Minor fix-ups for PIDX 2015-08-26 23:48:36 -07:00
Todd Gamblin
10bc981d0b Merge pull request #28 in SCALE/spack from bugfix/scipy to develop 
# By Gregory L. Lee
# Via Gregory L. Lee
* commit '2c3e7a6f87ef5f8b5ba154b5a8b7da7a119f4a67':
  added graphviz dependency and dysect variant to STAT
  added graphviz and dependencies
  use filter_file instead of patch
  added lapack and blas deps, fixed gfortran compiler dependency
 2015-08-26 22:12:14 -07:00
Gregory Becker
9345e78779 Fixed inaccurate comment in spec.py 2015-08-25 16:31:09 -07:00
Gregory Becker
ce8df65d7b Eliminated unnecessary differences in pull request 2015-08-25 16:28:55 -07:00
Gregory Becker
e32c59f805 Fixed file locking. Fix is slightly ugly (lock integer added) but it gets the job done 
It avoids having to spin simply on the OSError.
 2015-08-25 15:32:45 -07:00
Gregory Becker
4a2bd1753a Added dependency indices to database, ensuring correctly reconstructed specs from database 
Began work on file locking, currently commented out.
 2015-08-25 15:11:18 -07:00