Commit graph

24927 commits

Author SHA1 Message Date
Todd Gamblin
36b0730fac
Add spack --bootstrap option for accessing bootstrap store (#25601)
We can see what is in the bootstrap store with `spack find -b`, and you can clean it with `spack
clean -b`, but we can't do much else with it, and if there are bootstrap issues they can be hard to
debug.

We already have `spack --mock`, which allows you to swap in the mock packages from the command
line. This PR introduces `spack -b` / `spack --bootstrap`, which runs all of spack with
`ensure_bootstrap_configuration()` set. This means that you can run `spack -b find`, `spack -b
install`, `spack -b spec`, etc. to see what *would* happen with bootstrap configuration, to remove
specific bootstrap packages, etc. This will hopefully make developers' lives easier as they deal
with bootstrap packages.

This PR also uses a `nullcontext` context manager. `nullcontext` has been implemented in several
other places in Spack, and this PR consolidates them to `llnl.util.lang`, with a note that we can
delete the function if we ever reqyire a new enough Python.

- [x] introduce `spack --bootstrap` option
- [x] consolidated all `nullcontext` usages to `llnl.util.lang`
2022-02-22 12:35:34 -07:00
Adam J. Stewart
800933bbdf
py-notebook: fix py-nbconvert dep (#29020) 2022-02-22 15:26:23 +01:00
Adam J. Stewart
2516885615
py-shapely: add v1.8.1 (#29023) 2022-02-22 15:24:56 +01:00
SXS Bot
2446771b63
spectre: add v2022.02.17 (#29045)
Co-authored-by: sxs-bot <sxs-bot@users.noreply.github.com>
2022-02-22 15:21:45 +01:00
kwryankrattiger
f9843367ed
ParaView: constrain +cuda variant to version < 5.8 (#29049) 2022-02-22 15:21:07 +01:00
dependabot[bot]
b08ed91309
build(deps): bump docker/login-action from 1.12.0 to 1.13.0 (#29053)
Bumps [docker/login-action](https://github.com/docker/login-action) from 1.12.0 to 1.13.0.
- [Release notes](https://github.com/docker/login-action/releases)
- [Commits](42d299face...6af3c118c8)

---
updated-dependencies:
- dependency-name: docker/login-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-02-22 15:18:38 +01:00
Ethan Stam
0d3ecff903
ParaView: add use_vtkm as a multi-valued variant (#21977)
spelling fixes
2022-02-22 15:17:18 +01:00
Manuela Kuhn
aca6b73a6c
py-flit: add v3.6.0 (#29124) 2022-02-22 14:58:21 +01:00
Manuela Kuhn
92970c2006
git-annex: add 10.20220121 (#28993) 2022-02-22 14:54:29 +01:00
Harmen Stoppels
f47e24381d
zstd+programs: use xz for lzma lib (#29107) 2022-02-22 14:19:06 +01:00
Seth R. Johnson
2941afe9e0
qt: mark conflict between older versions and with newer xcode (#29122) 2022-02-22 14:15:15 +01:00
Harmen Stoppels
e6521e7379
llvm: new version 13.0.1 (#29119) 2022-02-22 06:22:22 -05:00
Tiziano Müller
37f021ef3c
cp2k: bump version to 9.1, fix building with CUDA (#29108)
first step towards fixing #28554
2022-02-22 11:26:47 +01:00
Chuck Atkins
2ab1ace5f4
rhash: un-block intel builds (#29117) 2022-02-22 09:24:29 +01:00
liuyangzhuan
8daee48231
openturns: add v1.18 (#29097) 2022-02-22 09:07:58 +01:00
Manuela Kuhn
8485474140
py-imageio: add 2.16.0 (#29066)
* py-imageio: add 2.16.0

* Update var/spack/repos/builtin/packages/py-imageio/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-02-21 16:41:28 -07:00
Glenn Johnson
51488dbff5
update bioconductor packages to bioconductor 3.14 (#28900) 2022-02-21 15:38:27 -07:00
Manuela Kuhn
1953d986ae
py-asttokens: add new package (#29073) 2022-02-21 14:47:28 -07:00
Manuela Kuhn
fef58db792
r-brobdingnag: add 1.2-7 (#28997) 2022-02-21 13:57:16 -06:00
Manuela Kuhn
36c64c8012
r-bh: add 1.78.0-0 (#28996) 2022-02-21 13:48:24 -06:00
Manuela Kuhn
8cd95b9f35
r-backports: add 1.4.1 (#28995) 2022-02-21 13:46:58 -06:00
Todd Gamblin
7912a8e90b
bugfix: Not all concrete versions on the CLI should be considered real (#28620)
Some "concrete" versions on the command line, e.g. `qt@5` are really
meant to satisfy some actual concrete version from a package. We should
only assume the user is introducing a new, unknown version on the CLI
if we, well, don't know of any version that satisfies the user's
request.  So, if we know about `5.11.1` and `5.11.3` and they ask for
`5.11.2`, we'd ask the solver to consider `5.11.2` as a solution.  If
they just ask for `5`, though, `5.11.1` or `5.11.3` are fine solutions,
as they satisfy `@5`, so use them.

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2022-02-21 11:46:37 -08:00
Todd Gamblin
2210f84a91
py-numpy, py-scipy: add rgommers as a maintainer (#29109) 2022-02-21 12:41:27 -07:00
Alberto Invernizzi
b8d042273a
Bring back cuda@11.4.0 conflicts for GCC and clang; add 11.4.3:11.4.4 (#29076)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2022-02-21 20:28:56 +01:00
Christoph Junghans
9173fd7c61
votca: fix git url and allow build without xtp parts (#29056)
* votca: fix git url
* Votca: add xtp variant
2022-02-21 09:23:00 -08:00
Glenn Johnson
275608e2f2
update CRAN R packages (#28786) 2022-02-21 11:22:33 -06:00
Manuela Kuhn
f744640289
py-importlib-metadata: add 4.11.1 (#29069) 2022-02-21 09:23:32 -07:00
Manuela Kuhn
b9d26caab8
py-executing: add new package (#29074) 2022-02-21 08:56:42 -07:00
Manuela Kuhn
0dd5d493d5
py-pandas: fix tests (#29044) 2022-02-21 08:20:33 -07:00
Seth R. Johnson
e7894b4863
geant4: fix CMake-derived data path (#29091)
* geant4-data: use build+run-only depends

* geant4: point to dependent datadir

This is "used" in the configure step to set up the Geant4Config.cmake
file's persistent pointers to the data directory, but the dependency
is still listed as "run" -- though I'm not sure this is the right behavior
since the geant4 installation really does change as a function of the
data directory, and the installation is incomplete/erroneous
without using one.

* Style
2022-02-21 12:05:59 +00:00
Manuela Kuhn
94d75d0327
py-flit-core: add v3.6.0 (#29009) 2022-02-21 11:35:00 +01:00
Adam J. Stewart
96fceb6e38
py-liblas: add new package (#29027) 2022-02-21 11:23:07 +01:00
h-murai
fc8c3ada56
nwchem: add support for Fujitsu A64FX compilers on v7.0.2 (#28990) 2022-02-21 10:26:51 +01:00
Sebastian Pipping
60fe21ddd7
expat: add v2.4.6, deprecate v2.4.5 (#29100) 2022-02-21 10:24:47 +01:00
Erik Schnetter
0ffce33447
Add c-blosc v1.21.1, c-blosc2 v2.0.4 (#29101) 2022-02-21 10:16:24 +01:00
Seth R. Johnson
043794362a
iwyu: add 0.17 and improve llvm target requirements (#29077)
* iwyu: new version 0.17

* iwyu: allow default llvm target when x86/x86_64
2022-02-21 10:14:21 +01:00
Tom Scogland
f36a6f3fc0
neovim remote: add new package (#29103) 2022-02-21 10:11:57 +01:00
Tom Scogland
7995b7eac4
py-pynvim: add new package (#29102) 2022-02-21 10:11:30 +01:00
Seth R. Johnson
509f1cc00a
git: install keychain helper on macOS (#29090) 2022-02-21 10:09:49 +01:00
Seth R. Johnson
7459aa6c95
Various package fixes for macOS (#29024)
* trilinos: disable dl on macOS

* py-sphinx-argparse: add explicit poetry dependency

* libzmq: fix libbsd dependency

libbsd is *always* required when +libbsd (introduced in #28503) . #20893
had previously removed the macos dependency because libbsd wasn't always
enabled. Libbsd support is only available after 4.3.2 so change it to a
conflict rather than bumping the dependency.

* hdf5: work around GCC11.2 monterey fortran bug

* go-bootstrap: mark conflict for monterey
2022-02-21 09:08:08 +01:00
Olivier Cessenat
2852126196
perl-fth: add the external find feature for perl-fth and new release (#28886) 2022-02-20 23:20:27 -07:00
Sebastian Pipping
9e2d78cffc
expat: Add latest release 2.4.5 with security fixes (#29086) 2022-02-19 15:53:20 -07:00
Seth R. Johnson
e19f29da66
silo package: fix patch for 4.11-bsd (#29075)
There's a check to skip for version '10.2-bsd', but the patch
does not apply to '11-bsd' either.
2022-02-19 07:26:32 -07:00
Harmen Stoppels
39fcafaf45
binutils: add v2.38 (#29067) 2022-02-19 06:02:34 -07:00
downloadico
22d07b328e
New package: ovito (#28787) 2022-02-19 05:05:11 -07:00
Manuela Kuhn
f37855f5bb
py-ipykernel: add 6.9.1 (#29071)
* py-ipykernel: add 6.9.1

* Add py-jupyter-core version restriction
2022-02-18 22:54:07 -07:00
Seth R. Johnson
f33770553f
Add/remove conflicts for Apple silicon (M1/aarch64) (#28850)
* go: remove broken bootstrapping for macos aarch64

* qt: mark apple silicon conflict

* trilinos: remove apple silicon conflict

* Apply review suggestions

* python: add apple silicon conflict for 2.7
2022-02-18 21:56:32 -07:00
Manuela Kuhn
e886a61a6c
r-distributional package: add version 0.3.0 (#29037) 2022-02-18 18:38:19 -08:00
eugeneswalker
bbb81d5d68
kokkos@:3.5.00 +sycl conflicts with %dpcpp@2022.0.0 (#29055) 2022-02-18 14:33:59 -08:00
Manuela Kuhn
99707beae7
py-humanize: add 4.0.0 (#29034) 2022-02-18 16:28:28 -06:00