Commit graph

6456 commits

Author SHA1 Message Date
Levi Baber
2a4b7a4dc4 r-goplot: new package (#8942) 2018-08-11 09:26:16 -05:00
Levi Baber
d4349b4945 r-findpython: new package (#8943) 2018-08-11 09:23:34 -05:00
Levi Baber
8ef5beebbf r-sm: new package (#8945) 2018-08-11 09:22:21 -05:00
健美猞猁
c4c84b7567 Add version 5.1.5 for gromacs. (#8948) 2018-08-11 09:21:32 -05:00
Tom Merrick
3addf5c380 Add version 1.12.8 to dbus (#8949) 2018-08-11 09:21:20 -05:00
Levi Baber
08addef275 r-bindrcpp: add new version (#8950)
* r-bindrcpp: add new version

* r-bindrcpp: version ordering and removing r version restriction
2018-08-11 09:21:05 -05:00
健美猞猁
84675e50d1 Add new versions for cmake. (#8955) 2018-08-11 08:38:20 -05:00
健美猞猁
c1daedfdbf Gromacs conflicts with cmake@3.10: . (#8956) 2018-08-11 08:37:51 -05:00
Levi Baber
c2b913d709 r-biasedurn: new package (#8937)
* r-biasedurn: new package

* r-biasedurn: add list_url
2018-08-10 16:08:31 -05:00
Levi Baber
7e1e689e4c r-amap: new package (#8935)
* r-amap: new package

* r-amap: add list_url

* r-amap: dep type
2018-08-10 15:21:22 -05:00
Levi Baber
b78c198b62 r-fastcluster: new package (#8934)
* r-fastcluster: new package

* r-fastcluster: add list_url
2018-08-10 15:01:12 -05:00
jthies
14f6b13a7b Phist 1.6.1 (#8933)
* packages/phist: new version 1.6.1

* packages/phist: depends on Python 3.x for generating Fortran and C++ bindings

* packages/phist: new version 1.7.2

* phist: depend on python@3 only for versions later than 1.7

* packages/phist: depend on python@3: rather than 3

* phist: python dependency is type='build', thans @adamjstewart
2018-08-10 12:53:18 -05:00
Denis Davydov
2a94d59433 boost: add 1.68.0 (#8931) 2018-08-09 17:08:20 -05:00
Gregory Lee
bbcb2bb8ca add fgfs variant to stat and develop version (#8919) 2018-08-09 10:56:08 -05:00
Levi Baber
a4d0e62dbd perl6-slurp: new package (#8672)
* perl6-slurp: new package

* perl-perl6-slurp: changing perl version dependency
2018-08-09 10:35:54 -05:00
Hadrien G
9e981fc73f Remove duplicate variant in Boost package (#8923) 2018-08-09 10:29:57 -05:00
Mark W. Krentel
393d3c64fc libiberty: new package (#8912)
* libiberty: new package

The libiberty.a library from GNU binutils.  Libiberty provides
demangling and support functions for the GNU toolchain.

This package uses the binutils tarfile but only builds the libiberty
subdirectory.  This is useful for other packages that want the
demangling functions without the rest of binutils.

Add variant 'fpic' to compile with -fPIC.

Addresses some issues raised in PR #8806.

* libiberty: change variant name to 'pic'.

Allow libiberty to install the library in lib64 and don't try to copy
it to lib.
2018-08-09 08:19:09 -05:00
Elsa Gonsiorowski, PhD
1cd33e7052 ECP VELOC Package update (#8910)
* update of veloc & dep versions (replace old non-working versions)

* veloc doesn't work with gcc <= 4.9.3

* explicitly pass MPI to CMake for veloc build
2018-08-08 21:40:38 -04:00
Satish Balay
2e891a6312 superlu_dist should be built with 'HAVE_PARMETIS=TRUE'. (#8917) 2018-08-08 20:50:48 -04:00
Mark W. Krentel
f152063898 elfutils: update version and add variants (#8891)
* elfutils: update version and add variants

Add latest version 0.173.

Add variants bzip2, xz and zlib to support reading compressed DWARF
sections, default True.

Move maintainer-mode to a variant with default False.  This is only
useful for developers who want to modify the source for generated
files.

* Add dependency on zlib for reading compressed DWARF sections.

Add variants to use bzip2 and xz for compressed sections.

Remove maintainer mode and the dependencies on flex and bison.
These are not used for one-time builds.

Be sure to squash both the commits and the commit messages.
2018-08-07 14:04:05 -05:00
Adam J. Stewart
79e7359f4d Add libs attribute to mesa and mesa-glu packages (#8904)
Also fix dependency version in glvis package.
Fixes build errors mentioned in #8454.
2018-08-07 10:18:05 +02:00
Geoffrey Malcolm Oxberry
4f251345fb caliper: update to use unwind virtual package 2018-08-06 22:01:50 -07:00
Geoffrey Malcolm Oxberry
6d92a88eb4 gperftools: use unwind virtual package 2018-08-06 22:01:50 -07:00
Geoffrey Malcolm Oxberry
f395aaa71d mfem+libunwind: use "unwind" virtual package 2018-08-06 22:01:50 -07:00
Geoffrey Malcolm Oxberry
163fc4cd18 apple-libunwind: new package, provides unwind
This commit continues the changes discussed in #8823 by creating a new
"apple-libunwind" placeholder package that supplies instructions for
how to configure packages.yaml to register Apple's libunwind
implementation with spack. This package also provides the "unwind"
virtual package representing the libunwind base API. The clang-apple
compiler version should be specified in packages.yaml so that
apple-unwind is only used with Apple's clang compiler, not the stock
LLVM compiler.
2018-08-06 22:01:50 -07:00
Geoffrey Malcolm Oxberry
853a3f14c7 Make libunwind provider of unwind virtual pkg
This commit begins addressing the ideas discussed in #8823. The
libunwind library now provides the "unwind" virtual package, which
represents the "libunwind base API" common to LLVM libunwind, Apple's
LLVM libunwind, and non-GNU libunwind.
2018-08-06 22:01:50 -07:00
Levi Baber
ea6918c1bf py-crossmap: needs py-setuptools (#8898)
* py-crossmap: needs py-setuptools

* py-crossmap: additional deps

* py-crossmap: make bx build/run
2018-08-06 17:43:14 -05:00
Reid Priedhorsky
ed9a1b7a45 add Charliecloud 0.9.1 (#8902) 2018-08-06 17:43:00 -05:00
健美猞猁
a816397322 Bump R to v3.5.1. (#8895) 2018-08-06 11:16:27 -05:00
Sergey Kosukhin
7cc11debdd Libtool: version 'develop' (#8894)
* libtool: add version 'develop'.

* libtool: patch: correct parsing of compiler output when collecting predeps and postdeps.
2018-08-06 10:43:26 -05:00
Sajid Ali
3fc1a65867 modified: var/spack/repos/builtin/packages/py-pytest/package.py (#8890) 2018-08-06 09:21:49 -05:00
Thomas Roehl
377e957f3b LIKWID: Switch to perf_event backend to allow user installations but with limited features (#8886)
* Switch to perf_event backend to allow user installations but with limited features.

* Fix flake8 issues

* Fix flake8 issues remove filter for INSTALL_CHOWN

* Incorporate the comments
2018-08-06 09:21:30 -05:00
健美猞猁
4dc8936b63 Bump mvapich2 to the latest v2.3 release. (#8892) 2018-08-06 12:03:33 +02:00
George Hartzell
9c2c6c7f7e Add unzip runtime dependency to lua package (#8831)
* Add unzip to lua-luaposix

I ended up on an [Ubuntu] system that hadn't had unzip employed
and discovered lua-luaposix requires it (while buildig Lmod).

Closes #8533

* Move unzip prereq to lua, type=run

Rather than touching up each of the lua rocks (packages)
that need unzip, make it available as a run dependency in
lua.

Tested by building lmod on a minimal Ubuntu system.
2018-08-05 13:26:22 -05:00
Christoph Junghans
abd1dfc333 kim-api: initial commit (#8873)
* kim-api: initial commit

* Update package.py
2018-08-04 16:47:35 -05:00
Tin Huynh
eb39d0c729 Package/flang: Updated to use own version of llvm (#8766)
Flang now uses its own version of llvm and clang (called flang-driver). This is
handled by adding flang-specific versions of the LLVM package and updates flang
to depend on those versions.
2018-08-03 20:35:09 -04:00
Christoph Junghans
c73d237d08 simplemoc: version bump (#8884) 2018-08-03 14:31:06 -05:00
Mark W. Krentel
69641851ea libmonitor: update version and add variant to configure (#8834)
* libmonitor: update to version 2018.07.18 and add variant to configure
for hpctoolkit.

* Specify the @2013.02.18 version in cbtf-argonavis and cbtf-krell,
since this is no longer the default version.  These are the only
other packages that use libmonitor.
2018-08-03 14:00:12 -04:00
Abhinav Bhatele
febfa60935 Update broken codesign.llnl.gov urls (#8880)
* amg2013: fix homepage and url

* kripke: fix homepage and url

* lcals: fix homepage and url

* lulesh: fix homepage and move to git

* urls on single line
2018-08-03 10:25:10 -05:00
Geoffrey Oxberry
0c01f42a9f arpack: add version 3.6.2 (#8881) 2018-08-03 09:53:44 -05:00
健美猞猁
8e1cc26be7 dmd: a new package. (#8826)
* dmd: a new package.

* Install src for dmd.

* Install src to prefix.src.

* Replace copy_tree with install_tree.
2018-08-02 22:07:01 -05:00
Todd Gamblin
43c77ac3cb libdwarf: remove use of hide_files()
- This was a nasty workaround due to the way our compiler wrappers used
  to work.  We don't want to have to modify our elfutils installation to
  install libdwarf.

- Since cd9691de5, we no longer need this because the package will always
  come before dependencies in our include order.
2018-08-02 19:00:52 -07:00
dorier
1ec06e6111 new package: XSD (#8784) 2018-08-02 16:28:19 -04:00
Stephen Herbein
3b0983a217 flux: update flux-core package and add a flux-sched package (#8818)
Renames the flux package to flux-core and updates its dependencies, versions,
and variants. Adds a flux-sched package.

This also updates two flux-core dependencies: lua and czmq.
2018-08-02 16:20:55 -04:00
Dan FitzGerald
e554add64b Change MUMPS to allow it to build with clang+xlf compiler combination (#8388)
The mumps package was unable to build using the llvm clang compiler
suite, as it defaulted to using mpif90 for linking and mpif90 cannot
be used for linking shared library code. This PR modifies the MUMPS
package.py to allow it to use IBM XL Fortran for linking. It also
eliminates the need for the existing MUMPS IBM XL patches by having
package.py specify the compiler-dependent "shared" flag to the
linker, and always using the compiler suite's Fortran compiler
for linking.
2018-08-02 14:23:37 -04:00
Tom Merrick
51aa604ed2 Fix openmpi to work with slurm/pmi and mxm (#8427)
* Add binutils+libiberty for mxm fabric
* Help find the pmi library when using the slurm scheduler
2018-08-02 14:06:39 -04:00
Levi Baber
c94109c34c Package py-biom-format fixes (#8727)
* py-biom-format: needs py-setuptools at runtime
* py-biom-format: needs py-pyqi
2018-08-02 13:51:51 -04:00
Yifan Zhu
6f2a739053 New package: GRNBoost (#8763) 2018-08-02 13:46:36 -04:00
Michael Kuhn
12fb1cdbe5 Replace pkg-config dependencies with virtual (#8783)
Several packages specified pkg-config as a dependency, which is
a specific implementation of the pkgconfig virtual. Most packages
do not request a specific implementation. The current concretizer
may choose a different implentation of pkgconfig for the nonspecific
dependents, which conflicts with the request for pkg-config. This
replaces all requests for a specific implementation of pkgconfig
with the virtual package as a temporary solution to the issue.
2018-08-02 13:29:04 -04:00
Matthias Wolf
b1c35e1e13 package neovim: add info for version 0.3.1 (#8866) 2018-08-02 13:04:59 -04:00