Since #16132, we've consolidated the setting of FORCE_UNSAFE_CONFIGURE to
`autotools.py`, so we don't need to use it in packages like `coreutils`,
in our commands, or in our container recipes.
- [x] Remove FORCE_UNSAFE_CONFIGURE from packages
- [x] Remove FORCE_UNSAFE_CONFIGURE from container recipes
- [x] Remove FORCE_UNSAFE_CONFIGURE from `spack ci` command
* [mfem] A few updates: add 'strumpack' variant; add 'zlib'
variant (same as 'gzstream'); fix optmization flag
for v4.0.
* [mfem] flake8 fix
* [mfem] Add version 4.1
* [mfem] Add/tweak some 'conflicts' directives.
* [gslib] Add new release versions + 'develop' version.
* [petsc] Restrict hdf5 version to <= 1.10.99 since 1.12.0 fails
* [metis] Use the original metis url for v4.0.3.
* [conduit] Remove restrictions to the used hdf5 variant to allow
building with other packages that use hdf5, e.g. petsc.
* [mfem] Few updates:
* Replace the 'gzstream' variant with 'zlib' variant.
* Do not add system library paths with -L flags.
* Allow '+pumi+shared' variant.
* Update the 'test_builds.sh' script.
* [occa] Add version 1.0.9.
* [mfem] Some OCCA and RAJA updates.
* [gslib] Fix the build for new versions of the library.
* [mfem] Add 'gslib' variant for GSLIB.
* [mfem] Add 'cuda' variant.
* [mfem] Add 'libceed' variant + a few more tweaks.
* [mfem] Add 'umpire' variant.
* [ceed] Add a draft for v3.0. Not tested. Just made sure that
concretization works for 'ceed' and 'ceed+cuda'.
* [nek] Fix Nek5000/NekCEM
* [nek] Add Nek5000-v19 & polishing Nek packages
* [flake8] Fix flake8 failure
* petsc: use of HDF5 does not care about +hl+fortran
* [petsc] Temporarily allow any hypre version with petsc@develop.
[ceed] Remove the requirement for hypre@develop.
* [libceed] Do not explicitly set NVCCFLAGS for v0.5 and later.
* [laghos] Add version 3.0, pointing to dev branch for now.
Do not set CXX at the make command line.
Simplify the dependecy directives a little.
[ceed] Use laghos v3.0 for ceed v3.0.0.
* [laghos] Keep the injection of CXX in the makefile for laghos
versions <= 2.0.
* [nekcem] Recovert hash-versions used by older versions of the
'ceed' package.
* [occa] Disable hip autodetection because it fails on some machines.
* [laghos] Update v3.0 with the actual release source.
* [suite-sparse] Explicitly add the c11 flag to CFLAGS.
* Update package.py (#15749)
* [magma] Add forgotten specification of the 'cuda_arch' variant.
* [ceed] Use magma v2.5.3 for ceed v3.0.
* libceed-0.6
* mfem: depend on libceed 0.6:, not 0.6.0:
* [libceed] Add 'magma' variant -- enable MAGMA backend.
* [ceed] In v3.0, use '+magma' variant of libceed when cuda is enabled.
* Initial package for Remhos (needs to be updated with actual sha256
* Adding Remhos to CEED-3.0, for now @develop
* petsc: add 3.13.0 (using petsc-lite) and 3.12.5
* ceed: update to petsc@3.13.0:3.13.99
* Temporary fix
* [nekcem] Add hash-version for ceed v3.0.
* [nek5000] Simplify source urls.
* [nektools] Use the same sources and versions as in nek5000.
* [ceed] Update Nek-related package versions.
* libceed: add v0.6 portabilty fix
* libceed: better v0.6 portabilty fix
* Adding Remhos 1.0 release in CEED-3.0
* Updating hash for Remhos-1.0
* [petsc] Add cuda variant.
* [libceed] Flake8 fix.
* [petsc] Add cuda variant.
* [ceed] Fix the OCCA version to 1.0.9. Enable petsc+cuda when
compiling ceed@3.0.0+cuda.
* nek5000: fix python 2.7+ syntax
* [laghos] Fix testing.
* [remhos] Fix testing.
* [remhos] For testing use the 'tests' target instead of 'test'.
* Add/update the maintainers for ceed, libceed, mfem, laghos, and remhos.
* [ceed] Remove unnecessary dependencies.
* libceed: activate AVX when supported
Co-authored-by: Thilina Rathnayake <thilinarmtb@gmail.com>
Co-authored-by: Jed Brown <jed@jedbrown.org>
Co-authored-by: Stan Tomov <tomov@eecs.utk.edu>
Co-authored-by: Tzanio <tzanio@llnl.gov>
* Throw an error at spack install invocation instead of most of the way through the build process when cuda_arch is unspecified.
* Clean-up of CMake booleans. No actual change.
* Use CMake variables for hwloc and libelf installation directories and avoid injecting extra flags into CMAKE_CXX_FLAGS
* Conflict should only exist for +cuda variant.
* Biopandas python package
* Update var/spack/repos/builtin/packages/py-biopandas/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-biopandas/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* remove scipy dependency
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
At least the v2.0.2.0 tar ball contains compiled object files etc, which
cause the build to fail on other architectures (ppc64le in particular), so
this patch adds a `make clean` after configuring first.
* SourceForge: Mirror Mixin
Add a mixing class for direct `CNAME`s to sourceforge mirrors.
Since the main gateway servers are often down, this could reduce
timeouts and fetch errors for sourceforge.net hosted software.
* SourceForge: unspectacular mirror replacement
add mirrors to all sourceforge packages with trivial
download logic.
tested fetch of latest version of each of these packages
with various mirrors before committing.
* SourceForge: xz
the author homepage is chronocially overrun and this is the offical
upload with many mirrors.
* macOS: Fix emacs Linking
Fix linking issue of emacs on macOS (clang and gcc).
Applies the same work-around as conda-forge:
b051f6c928/recipe/build.sh
Homebrew avoids this by linking against the system ncurses lib:
https://github.com/Homebrew/homebrew-core/blob/master/Formula/emacs.rb
* ncurses: fix outdated variant comment
this comment was build on the assumption that gnutls
triggers a termlib dependency in emacs. that's not the
case, ncurses itself depends on termlib when build with
this feature.
libpng still has its sourceforge page but is actively been
developed on github.
since the sourceforge urls are too often down (as seen in
my nightly CI/CD tests), just switch the download source to
GitHub instead.
Mesa links against libtinfo so needs to depend on ncurses. It also needs
a little help finding the library directory so an LDFLAGS configure
option is added.
* MPark.Variant: GCC 7.3.1 Conflict
Due to an ICE in this specific patch-release of GCC, compile
errors in downstream packages should be avoided with a clean
conflict.
* Fix superfluous spaces
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Fix typo
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Add Cubist
* enhance recipe
* Not using OS module anymore
* remove white space
* Fix build shell
* make Flake8 happy
* use bash shell for build
* Convert it To MakefilePackage as per peer-review
* Update var/spack/repos/builtin/packages/neo4j/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Add new package: neo4j
* refine neo4j package
* fix flake8 warning
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* update: memsurfer with python3
* flake8 compliance
* Update var/spack/repos/builtin/packages/memsurfer/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/memsurfer/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/memsurfer/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* removed build_type preferences at adamjstewart's suggestion
* Added build/run dependency on python3.7
as suggested by adam stewart
* more flake8 horror!
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* sonLib package as required by the HAL toolkit
* cleanup
* Update var/spack/repos/builtin/packages/sonlib/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/sonlib/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
According to my nightly CI/CD tests, x.org is another large provider
of software in common build chains that is often down.
Added a hand-selected amount of mirrors that is well up-to-sync.
Tested with `util-macros` that has a quite "recent" patch release.
Other packages to follow in an individual PR.
* MAINT: Charliecloud OSX error
* raise an appropriate error when attempting to build
Charliecloud on Mac OSX, since it will otherwise fail
with a more confusing configure stage link check failure
* Update var/spack/repos/builtin/packages/charliecloud/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* MAINT: PR 16049 revision
* remove an unused import
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
