Commit graph

12719 commits

Author SHA1 Message Date
darmac
92fe14cc47
Add new package: libp11 (#18778) 2020-09-23 20:46:57 -05:00
darmac
b69643de7f
Add new package: librelp (#18779) 2020-09-23 20:46:28 -05:00
darmac
527ea798c5
Add new package: librtlsdr (#18780) 2020-09-23 20:45:47 -05:00
darmac
f2093dc3c4
Add new package: libtar (#18781) 2020-09-23 20:45:22 -05:00
darmac
8ae3ccdea4
Add new package: libtommath (#18782) 2020-09-23 20:44:51 -05:00
darmac
63d45b975d
Add new package: libxcrypt (#18783) 2020-09-23 20:44:23 -05:00
darmac
e70c20f13f
Add new package: libverto (#18785) 2020-09-23 20:43:55 -05:00
darmac
28c6f1ddc2
Add new package: logrotate (#18786) 2020-09-23 20:43:29 -05:00
darmac
4a2b56122c
Add new package: mcpp (#18787) 2020-09-23 20:42:45 -05:00
darmac
17c55f3d91
Add new package: mlocate (#18788) 2020-09-23 20:42:21 -05:00
darmac
16c0375d70
Add new package: mokutil (#18789) 2020-09-23 20:41:12 -05:00
darmac
1b707988c5
Add new package: openslp (#18791) 2020-09-23 20:38:38 -05:00
darmac
f87d032228
Add new package: sblim-sfcc (#18792) 2020-09-23 20:38:02 -05:00
darmac
d1d5ee395d
Add new package: p11-kit (#18793) 2020-09-23 20:37:36 -05:00
darmac
6970e0da69
Add new package: patchutils (#18794)
* Add new package: patchutils

* patchutils: refine url
2020-09-23 20:37:06 -05:00
darmac
83c1f035a2
Add new package: pciutils (#18795) 2020-09-23 20:35:50 -05:00
darmac
9577ed71fe
Add new package: oci-systemd-hook (#18805) 2020-09-23 20:35:14 -05:00
darmac
8c3b081147
Add new package: py-asyncio (#18809) 2020-09-23 20:30:17 -05:00
darmac
9263f56b6d
Add new package: py-robotframework (#18814) 2020-09-23 20:19:36 -05:00
darmac
dd4f55cb46
Add new package: py-chronyk (#18815) 2020-09-23 20:17:11 -05:00
darmac
0dcfd8909a
Add new package: sysfsutils (#18819)
* Add new package: sysfsutils

* fix flake8 error
2020-09-23 20:12:52 -05:00
darmac
16d4bc59ba
Add new package: tcpdump (#18820) 2020-09-23 20:12:24 -05:00
darmac
0aafdcfadb
Add new package: tdengine (#18821) 2020-09-23 20:11:57 -05:00
darmac
15e75c03ff
Add new package: systemtap (#18822) 2020-09-23 20:11:21 -05:00
darmac
733a8ee77b
Add new package: timedatex (#18823)
* Add new package: timedatex

* timedatex: fix flake8 error
2020-09-23 20:10:54 -05:00
darmac
72e03161e4
Add new package: xmlrpc-c (#18828) 2020-09-23 20:06:23 -05:00
darmac
3b9ba5a9ab
Add new package: authselect (#18832) 2020-09-23 20:02:56 -05:00
darmac
d72c73cd60
Add new package: bird (#18833) 2020-09-23 20:02:15 -05:00
darmac
5cf8fd4cb3
Add new package: libmetalink (#18834) 2020-09-23 20:01:50 -05:00
darmac
d796566605
Add new package: libnfnetlink (#18835) 2020-09-23 20:01:22 -05:00
darmac
6539d45ad6
Add new package: mesa-demos (#18839) 2020-09-23 19:59:36 -05:00
darmac
a0228d6f94
Add new package: zabbix (#18840) 2020-09-23 19:59:05 -05:00
darmac
63340a1fac
Add new package: libevdev (#18886) 2020-09-23 19:56:23 -05:00
darmac
653344a9f1
Add new package: fakechroot (#18887) 2020-09-23 19:55:47 -05:00
darmac
3690a81aa4
Add new package: f2c (#18889) 2020-09-23 19:55:21 -05:00
darmac
e294a1e0a6
fasttext: new package at v0.9.2 (#18890) 2020-09-23 18:53:31 +02:00
vvolkl
394a23d392
py-uproot4: added new package at v0.0.27 (#18891) 2020-09-23 18:17:57 +02:00
vvolkl
3c418d9faa
py-awkward1: added new package at v0.3.1 (#18892) 2020-09-23 18:15:32 +02:00
Matthieu Dorier
4277bc6429
nlohmann-json-schema-validator: new package at v2.1.0 (#18837) 2020-09-23 17:28:33 +02:00
Howard Pritchard
aedc056f9a
trilinos: patch for cray cce fortran compiler (#18164)
two patchfiles needed since this file changed between 12.12.1 and 12.14.1

Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
2020-09-23 09:54:51 -05:00
darmac
562f504000
Add new package: addrwatch (#18728)
* Add new package: addrwatch

* addrwatch: refine url
2020-09-23 14:02:03 +02:00
Andre Sailer
8fac02e437
LCIO: added v2.15.[0123] (#18841) 2020-09-23 13:55:01 +02:00
Mathias Anselmann
b578d55d12
setting old GO default values for older trilinos versioins to (hopefully) not break the installation. Adjusting dealii package to just explicitly set GO if trilinos >= 12.18.1 is installed (#15439) 2020-09-22 18:52:05 -05:00
Jen Herting
bbb6b14540
treelite: new package at v0.93 (#18861) 2020-09-22 22:30:04 +02:00
Massimiliano Culpo
92b8177b77
gromacs: remove 'rdtscp' variant, deduce the flag from the target (#18868)
refers #18858
2020-09-22 13:11:35 -06:00
Miroslav Stoyanov
acf4dc2e12
Heffte: add magma variant (#18849) 2020-09-22 15:05:00 -04:00
Martin Pokorny
a23d67f7ea
casacore: added v3.3.0 (#18870) 2020-09-22 20:55:58 +02:00
Andrew Gaspar
0d0ba79bfb
Rust: added v1.46.0 (#18863) 2020-09-22 20:54:54 +02:00
Jordan Ogas
435c8862a6
charliecloud: added v0.19 (#18866) 2020-09-22 20:45:29 +02:00
Glenn Johnson
84dbf6948e
Set conflicts parameter for cuda-11 (#18847)
Magma is not currently compatible with CUDA-11. While this is reflected
in the package, it is done with a comment in a `depends_on` directive,
which has the effect of trying to install a version of CUDA that may be
different from the one in the current environment, without any message
to the end user. A `conflicts` is a better way to handle this.
2020-09-22 12:35:13 -04:00
Adam J. Stewart
9558377f0f
Bash: fix build with Xcode 12 (#18843) 2020-09-22 12:25:54 -04:00
Ganesh Kumar
9e906e2d47
ROCm 3.8 Stage1 Components (#18830)
* ROCm 3.8 Stage1 Components

* version review comments

* 3.5 dependency restrictions

Co-authored-by: root <root@mlseqa-hyd-virt-srv-07.amd.com>
2020-09-22 11:09:03 -05:00
Simon Pintarelli
7d0ae0f295
sirius: use -DCUDA_ARCH for develop, version >7.0.0 (#18852)
Also remove master branch
2020-09-22 17:35:11 +02:00
victorusu
a078e2ba13
ReFrame: added v3.1 (#18860) 2020-09-22 17:19:51 +02:00
Chris White
30d24db116
Added RAJA v0.12.1`and Umpire v4.0.1 (#18756)
Also renamed 'master' to 'main'
2020-09-22 15:40:16 +02:00
Hadrien G
a1e19de8e1
acts: added v1.0 (#18859) 2020-09-22 15:05:59 +02:00
Christoph Junghans
bdefac6964
miniqmc: fix install (#18857) 2020-09-21 18:15:27 -06:00
Robert Blake
b272e00d6a
util-linux: fix bash completion install errors. (#18696)
* Disable bash completion by default.

* flake8

* Adding explicit dependence on libuuid

* Adding explicit dependence on cryptsetup

This way we don't pick up host crypto packages by mistake.

* Fixing the completion directory.

* Update var/spack/repos/builtin/packages/util-linux/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* flake8

* Removing libuuid linkage according to @michaelkuhn on #18696

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-21 16:11:44 -05:00
Christoph Junghans
0dd7f140b0
nut: fix install (#18848)
* nut: fix install

* flake8
2020-09-21 16:09:53 -05:00
Christoph Junghans
165dbf719d
fix spack-build usages (#18846) 2020-09-21 12:19:06 -05:00
Joseph Wang
88187bc63c
add groff and ghostscript (#18803)
Without these packages, graphviz will set groff/ghostscript to false which will cause the build to fail.
2020-09-21 17:39:13 +02:00
Adam J. Stewart
678e9f5ad2
libksba: add new version (#18798) 2020-09-20 08:53:42 -04:00
Adam J. Stewart
7d5ddb1fc6
readline: simplify linking to ncurses (#18801) 2020-09-19 16:32:42 -05:00
Adam J. Stewart
489377d051
SciPy: add patch to fix XCode 12 build (#18800) 2020-09-19 16:32:26 -05:00
Adam J. Stewart
458dc81878
ncurses: fix libs method (#18799) 2020-09-19 16:32:05 -05:00
Adam J. Stewart
f570d7a45c
graphviz: fix build with Apple Clang 12.0.0 (#18797) 2020-09-19 16:29:42 -05:00
Adam J. Stewart
36e9c1eba3
fish: relax ncurses dependency constraints (#18796) 2020-09-19 16:29:27 -05:00
Massimiliano Culpo
fcb4dfc307
Ensure variant defaults are parsable from CLI. (#18661)
- Add a unit test to check if there are unparsable defaults
- Fix 'rust' and 'nsimd' variants
2020-09-19 07:54:26 +02:00
Larry Knox
fff2f34de8
Hdf5 1.10.7 (#18712)
* Update hdf5/package.py for HDF5 1.10.7 release and obsolete home url.
Add maintainer to hdf/package.py.

* remove stray space.

* Remove unnecessary /diplay/support from homepage urls.
2020-09-18 21:38:56 -05:00
Tom Payerle
e36498cb46
bedtools2: Add missing python build dependency (#18744) (#18746)
Makefile invokes python to build some scripts
See #18744
2020-09-18 21:38:21 -05:00
Michael Kuhn
6198963ede
popt: Add missing libiconv dependency (#18731)
Without this dependency, the build fails due to undefined references.
2020-09-18 18:00:00 -04:00
Adam J. Stewart
b44cf08cb2
py-notebook: add new version (#18638) 2020-09-18 14:46:12 -05:00
Glenn Johnson
6e82776773
Add mumax-3.10 release version (#18740)
This PR adds the current release version of mumax and tweaks the install
of the previous beta version.

- Set the url parameter to reflect the release version over the beta
  version. Hopefully, this will be consistent going forward.
- Set an explicit url for the previous beta version.
- Accept values for `cuda_arch`. The previous version had its own list
  but the release version does not.
- Replace the built in cuda compute capabilities list with the one
  provided by Spack for the 3.10beta version.
2020-09-18 13:36:00 -04:00
Seth R. Johnson
71c7e28ca7
swig: add version 4.0.2 and 4.0.2-fortran (#18741) 2020-09-18 13:35:33 -04:00
Jen Herting
44c7826892
[py-pyarrow] added variant cuda (#18716)
* [py-pyarrow] added variant cuda

* [py-pyarrow] simplifying variant dependencies
2020-09-18 10:28:28 -05:00
darmac
8cb1192050
util-linux: fix build error (#18647)
* util-linux: fix build error

* refine install stage
2020-09-18 10:04:28 -05:00
darmac
a4cdf664c6
Add new package: shiro (#18541)
* Add new package: shiro

* refine description and dependencies
2020-09-18 10:03:32 -05:00
ketsubouchi
403ea4384e
ocaml: support 4.11 (#18705) 2020-09-18 10:02:50 -05:00
Toyohisa Kameyama
7d0a46c051
iwyu: Require llvm+all_targets on non-x86_64 systems (#18710) 2020-09-18 10:31:03 -04:00
Axel Huebl
a8b6faf430
py-recommonmark: fix URL and docutils version (#18714) 2020-09-18 12:07:57 +02:00
Axel Huebl
275583c02f
py-breathe: added v4.21.0 (#18722) 2020-09-18 07:44:54 +02:00
Mark W. Krentel
80fe51046c
libpfm4: add version 4.11.0 (#18720)
Add version 4.11.0 for libpfm4.
Add myself as maintainer.
2020-09-17 15:58:23 -05:00
Jen Herting
e329e13f32
[arrow] added cuda variant (#18715) 2020-09-17 15:26:51 -05:00
Glenn Johnson
4b41d56bc3
Add bart-0.6.00 (#18717)
This PR adds version 0.6.00 of bart.
2020-09-17 15:25:08 -05:00
Adam J. Stewart
f9699fd3ff
py-nbconvert: add new version (#18636) 2020-09-17 15:23:59 -05:00
Adam J. Stewart
69d8417d8a
py-nbclient: add new package (#18628) 2020-09-17 12:54:03 -07:00
Adam J. Stewart
01df552149
py-matplotlib: add v3.2.2 (#18681) 2020-09-17 12:46:20 -07:00
t-nojiri
b66d756da6
bowtie : Fix for aarch64 (#18709) 2020-09-17 11:42:32 -05:00
Glenn Johnson
7c01c64d53
gpu-burn: allow to build with non-gcc compilers (#18707)
This PR modifies the patch to use $(CXX) rather than g++ to allow the
spack compiler to be used.
2020-09-17 17:24:22 +02:00
Glenn Johnson
2576d8d767
Update libbeagle (#18703)
This PR fixes a couple of things with the libbeagle package.

- libbeagle can only be built for one GPU type. Add a test for that.
- version 2 had the arch statement in
  libhmsbeagle/GPU/kernels/Makefile.am but version 3 has it in
  configure.ac. Put the variant specified value in configure.ac for
  consistency.
2020-09-17 10:04:21 -05:00
Ganesh Kumar
0f332c73a6
Rocm 3.7 miopen, miopengemm, rocalution and rocm-opencl (#18690)
* ROCm 3.5 miopen recipe

* fixing flake8 issues

* cmake variant fix

* min support fix

* variant possible values

* rocm3.7 change for miopen, rocalution and rocm-opencl

* review comments
2020-09-17 10:00:45 -05:00
Enrico Usai
91bd99b4b2
aws-parallelcluster: add 2.9.1 and 2.9.0 releases (#18676)
Checked all the third party dependencies for all the versions.
2020-09-17 09:59:11 -05:00
arjun-raj-kuppala
7fb83047fd
Hipify clang with AMD rocm 3.7.0 update (#18672)
* Hipify clang with rocm 3.7.0 update

* Update var/spack/repos/builtin/packages/hipify-clang/package.py

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2020-09-16 22:18:48 -05:00
Greg Sjaardema
9a5f043ce6
seacas: Force use of non-mpi-enabled hdf5 (#18702)
Due to recent changes in the `netcdf-c` package, it is now necessary to explicitly request a non-mpi-enabled hdf5 build if building a non-mpi-enabled seacas.
2020-09-16 16:37:13 -05:00
Robert Blake
f95d7959b2
lustre: Adding external support. Closing #18698 (#18700) 2020-09-16 16:29:59 -05:00
Simon Frasch
91649763ab
spla: Add version 1.1.1 and fix cmake flag when build with +cuda (#18699) 2020-09-16 16:27:00 -05:00
Sajid Ali
7c23498f1d
bump CGAL version (#18693)
* bump CGAL version

* Address reviewer comments

* flake8 fix

* Address reviewer comments

* Address reviewer comments
2020-09-16 16:22:40 -05:00
Andre Sailer
635b8243fe
[dd4hep]: add variant lcio (#18691) 2020-09-16 17:33:14 +01:00
Tiziano Müller
0d5c065678
libvdwxc: unbreak concretization, request fftw-api (#18688)
* libvdwxc: unbreak concretization, request fftw-api

mixing both fftw and fftw-api in a dependency tree can trigger the
following:

```
$ spack spec cp2k@master +sirius
==> [2020-09-16-12:36:06.552981] sirius applying constraint gsl
==> [2020-09-16-12:36:06.554270] sirius applying constraint openblas@0.3.10%gcc@7.5.0~consistent_fpcsr~ilp64+pic+shared threads=none arch=linux-opensuse_leap15-sandybridge
Traceback (most recent call last):
  File "./bin/spack", line 64, in <module>
    sys.exit(spack.main.main())
  File "/data/tiziano/debug-spack/spack2/lib/spack/spack/main.py", line 762, in main
    return _invoke_command(command, parser, args, unknown)
  File "/data/tiziano/debug-spack/spack2/lib/spack/spack/main.py", line 490, in _invoke_command
    return_val = command(parser, args)
  File "/data/tiziano/debug-spack/spack2/lib/spack/spack/cmd/spec.py", line 103, in spec
    spec.concretize()
  File "/data/tiziano/debug-spack/spack2/lib/spack/spack/spec.py", line 2228, in concretize
    user_spec_deps=user_spec_deps),
  File "/data/tiziano/debug-spack/spack2/lib/spack/spack/spec.py", line 2716, in normalize
    visited, all_spec_deps, provider_index, tests)
  File "/data/tiziano/debug-spack/spack2/lib/spack/spack/spec.py", line 2654, in _normalize_helper
    dep, visited, spec_deps, provider_index, tests)
  File "/data/tiziano/debug-spack/spack2/lib/spack/spack/spec.py", line 2613, in _merge_dependency
    visited, spec_deps, provider_index, tests)
  File "/data/tiziano/debug-spack/spack2/lib/spack/spack/spec.py", line 2654, in _normalize_helper
    dep, visited, spec_deps, provider_index, tests)
  File "/data/tiziano/debug-spack/spack2/lib/spack/spack/spec.py", line 2554, in _merge_dependency
    provider = self._find_provider(dep, provider_index)
  File "/data/tiziano/debug-spack/spack2/lib/spack/spack/spec.py", line 2489, in _find_provider
    providers = provider_index.providers_for(vdep)
  File "/data/tiziano/debug-spack/spack2/lib/spack/spack/provider_index.py", line 80, in providers_for
    return sorted(s.copy() for s in result)
  File "/data/tiziano/debug-spack/spack2/lib/spack/llnl/util/lang.py", line 249, in <lambda>
    lambda s, o: o is not None and s._cmp_key() < o._cmp_key())
TypeError: '<' not supported between instances of 'str' and 'NoneType'
```

while at the same point disallowing MKL as a fftw provider.
Solving both issues by depending on `fftw-api@3` instead and adding a
conflict on `^fftw~mpi` when using `+mpi` (thanks to alalazo).

* cp2k: use conflicts instead of runtime checks for fftw/openblas variants
2020-09-16 10:41:46 -05:00
t-nojiri
cb218058bc
fraggenescan: Modify build_targets for aarch64 (#18687) 2020-09-16 10:40:33 -05:00