Commit graph

10017 commits

Author SHA1 Message Date
Seth R. Johnson
29a01f488c
Fix QT on Intel (#14745)
- More robustly handle compiler version switching between QT4 and 5, and
  mac/linux, and gcc/intel/clang
- Remove assumption about intel linker being in path
2020-02-04 21:03:47 -06:00
Seth R. Johnson
731148e0e1
Use CMake for libmng package (#14747)
* Convert libmng to use CMake rather than autoconf

The autoconf script failed to recognize the intel compiler; it was
harwired to use gcc.

* Simplify cmake logic and remove unused variant
2020-02-04 19:33:33 -06:00
Seth R. Johnson
52d1f5b839
Remove python patch for inapplicable versions (#14746)
This patch was merged in to upstream python 3.7 and is fixed in 3.7.6.
2020-02-04 19:32:48 -06:00
Christoph Junghans
1974ad4e7f
heffte: initial commit (#14744) 2020-02-04 15:06:03 -07:00
Jennifer Herting
d4d82281d1
[rust] added version 1.41.0 (#14742) 2020-02-04 15:11:36 -06:00
Jennifer Herting
997a0f4207
New version for mariadb and disable dtrace (#14734)
* [mariadb] added version 10.4.8

* [mariadb] disabled dtrace
2020-02-04 15:01:25 -06:00
Rao Garimella
b34e7ad28f
MSTK package: add version 3.3.2 (#14689) 2020-02-04 11:15:45 -08:00
Christoph Junghans
603e2794db
cray-libsci: initial commit (#14709)
* cray-libsci: initial commit
2020-02-04 10:18:20 -07:00
Massimiliano Culpo
1bbe0a1f74
abinit: fix dependency on fftw (#14739)
fixes #14578

Abinit's recipe requires double precision FFTW libraries
2020-02-04 15:29:21 +01:00
Dr. Christian Tacke
0ec9377852
pythia8: added old versions, build depend on rsync (#14740) 2020-02-04 15:27:57 +01:00
Nicolas Richart
19ff3c0f67
akantu: new package at v3.0.0 (#14685) 2020-02-04 11:04:59 +01:00
Andrew W Elble
4accc78409
Git fetching: add option to remove submodules (#14370)
Add an optional 'submodules_delete' field to Git versions in Spack
packages that allows them to remove specific submodules.

For example: the nervanagpu submodule has become unavailable for the
PyTorch project (see issue 19457 at
https://github.com/pytorch/pytorch/issues/). Removing this submodule
allows 0.4.1 to build.
2020-02-03 19:02:45 -08:00
Rob Latham
7d444f08e7
update pmdk to 1.8 (#14733)
new upstream release
- notable in that it has experimental powerpc-le support (e.g. summit)
- required a new patch to disable documentation
2020-02-03 19:15:52 -06:00
Massimiliano Culpo
42633b0869
octave: mkoctfile doesn't use compiler wrappers (#14726)
* Octave: moved the short description in its own paragraph

* Octave: patch mkoctfile.in.cc to avoid using compiler wrappers

* Added a check to ensure mkoctfile works correctly
2020-02-03 15:08:44 -06:00
Adam J. Stewart
74c8f25826
Add new versions of matplotlib (#14731) 2020-02-03 15:07:12 -06:00
albestro
94971d519c
Fix CMake and update libarchive (#14684)
* update libarchive and fix version of libarchive cmake dependency

* (at least) libarchive 3.3.3 dependency from cmake 3.15.0

* cmake depends on libarchive 3.1.0 if not specified differently

currently it is applied to cmake <3.15.0

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-02-03 11:26:38 -05:00
Andrew W Elble
30dd7ae176
clingo: new versions (#14728)
5.3.0 and 5.4.0
2020-02-03 07:58:34 -06:00
Jean-Paul Pelteret
dcaa50c9d0
deal.II: Add patch for TBB version check (#14724) 2020-02-03 13:04:12 +01:00
Mark W. Krentel
3d9787a8bf
hpcviewer: add version 2020.01 (#14718) 2020-02-02 09:26:21 -06:00
Jean-Paul Pelteret
44f60f9fec
Update package: SymEngine 0.5.0 (#14722) 2020-02-02 09:25:51 -06:00
Adam J. Stewart
0c0aba579a
octave: add maintainer (#14716) 2020-02-01 19:46:35 -06:00
Tim Haines
412c336113
boost: Add versions 1.71.0 and 1.72.0, use Clang toolset on Darwin (#14678)
* boost: Add versions 1.71.0 and 1.72.0

* Remove 'darwin' target

* Add hainest as maintainer
2020-01-31 17:56:40 -06:00
Kelly (KT) Thompson
0c9ac8d8d1
draco: update versions (#14690)
* draco: update versions

+ Added versions 7.3.0 and 7.4.0.
+ Change several variants to be default TRUE since most consumers need these
  variants enabled (eospac, lapack, parmetis, superlu-dist). Change variant name
  for `+superlu_dist` to use hyphen instead of underscore.  This makes the
  variant name consistent with the spackage name for `superlu-dist`.
+ Clean up `depends_on` instructions and avoid specifying `type` when possible.
+ Provide patch files that are necessary for some machines (mostly Cray
  machines).

* Remove trailing whitespace.

* Revert variant name to use underscore.

* add maintainer information.
2020-01-31 14:03:54 -06:00
Themos Tsikas
04e6fd60f3
NAG Fortran Compiler, 6.0 dropped (unavailable), 7.0 added (#14691)
* NAG Fortran Compiler, 6.0 dropped (unavailable), 7.0 added

* Update package.py

* Update package.py
2020-01-31 14:03:31 -06:00
Dr. Christian Tacke
6f4c90378a
[libfabric@1.9.0] Fix C++ header usage (#14703)
Fix from libfabric's git for 1.9.0.

Compiling C++ software against libfabric@1.9.0 doesn't work
without this patch.

See: 2e95b0efd8
2020-01-31 14:01:58 -06:00
Matthieu Dorier
b7ee2d02e4
Fixed DIY package missing MPI dependency (#14704) 2020-01-31 14:01:17 -06:00
Christoph Junghans
d83309493f
superlu-dist: enforce OpenMP=OFF (#14708) 2020-01-31 13:35:46 -06:00
Christoph Junghans
47ee690076
portage: fix compile on icc (#14707) 2020-01-31 13:35:20 -06:00
Andrew W Elble
b072caadec
fix: py-pillow build_ext vs. install (#14666)
Previously, the install stage would compile in things that were
disabled during the build_ext phase. This would also result in the
build pulling in locally installed versions of libraries that were
disabled. The install process doesn't honor the same command-line
flags that build_ext does, but does call build_ext again. Avoid the
whole issue by just writing the options to setup.cfg

Also, add the Imagemagick dependency for tests.
2020-01-30 14:42:48 -06:00
Massimiliano Culpo
1e0408d05a
Updated docstring and version of lmod to v8.3 (#14687) 2020-01-30 12:33:16 -06:00
Adam J. Stewart
ee35d949f9
Add GDAL 3.0.4 (#14688) 2020-01-30 12:08:47 -06:00
Jennifer Herting
a5b2347cfe
[py-joblib] added version 0.11 (#14672) 2020-01-30 02:27:04 -08:00
Jennifer Herting
23a759cda0
[r-manipulatewidget] added versions (#14674) 2020-01-30 02:26:48 -08:00
Jennifer Herting
39035e4517
[r-rgl] added version 0.100.19 (#14675) 2020-01-30 02:26:24 -08:00
Cameron Smith
488e25ea34
pumi: sim version check, meshes via submodule, ctest (#14597)
* pumi: sim version check, meshes via submodule, ctest

* Apply suggestions from code review

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* pumi: update comment on master version string

* pumi: description of simmodsuite_version_check variant

* pumi: add white space to variant description

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-01-29 18:29:07 -06:00
Greg Becker
bd60e0f137
fix cycle dependency in libxml+python (#13847)
* fix cycle dependency in libxml+python
* comment why we need these dependencies
2020-01-29 12:39:55 -08:00
noguchi-k
da189b8d1d
Fastx-toolkit package: patch for Fujitsu compiler (#14218)
Specify the scope of pragma pack
2020-01-29 11:45:37 -08:00
Adam J. Stewart
ed4d544e8f
Fix py-pillow tests (#14670) 2020-01-29 13:24:44 -06:00
Robert Pavel
b142914b24
Added MiniAMR@1.4.4 (#14667) 2020-01-29 13:24:22 -06:00
Robert Pavel
30c8e1d8a0
Added xsbench@19 to Version List (#14668) 2020-01-29 13:24:03 -06:00
Jennifer Herting
549aae7f72
[py-griddataformats] added new versions (#14671) 2020-01-29 13:23:22 -06:00
Michael Kuhn
52a7f94d9e
pythia8: add new package (#14665) 2020-01-29 11:40:39 -06:00
Matthias Wolf
4e3617fe1d
py-pyperf: add 1.6.{0,1} (#14662) 2020-01-29 09:00:03 -06:00
Matthias Wolf
1af36f0cdc
flatbuffers: add 1.11.0 (#14663) 2020-01-29 08:58:41 -06:00
Matthias Wolf
53d891a501
py-black: update url, add 19.3b0 (#14664) 2020-01-29 08:56:54 -06:00
Andrew W Elble
9d7e482497
git: add version 2.25.0 and fixup pcre dependency (#14649)
* git: add version 2.25.0 and fixup pcre dependency

pcre2 became optional in 2.14 and the default in 2.18. I noticed this
as git was compiling against the system pcre2 (spack was
specifying pcre as the dependency).

* missed a chunk from my internal repo
2020-01-28 21:01:25 -06:00
Glenn Johnson
e710656310 Set netcdf-fortran to build serially with Intel compiler (#14461)
* Set netcdf-fortran to build serially with Intel compiler

This PR turns off parallel builds when the Intel compiler is used.
Builds with the Intel compiler will fail otherwise.

* Change how parallel build is handled

Use patch from netcdf-fortran project to turn off parallel buildi for
version 4.5.2.
2020-01-28 15:13:51 -06:00
darmac
2b0b340aab racon: support aarch64 and fix install error (#14529)
* racon: support aarch64 and fix install error

* add aarch64 patch for racon
2020-01-28 15:12:40 -06:00
noguchi-k
ea0a549db3 pcma: set return value and change return type of function (#14579) 2020-01-28 15:08:35 -06:00
t-karatsu
492b600d29 diffutils: Changed the handling of undeclared functions from warning … (#14593)
* diffutils: Changed the handling of undeclared functions from warning to error.

* diffutils: Change the handling of warnings or error

* Delete '-Werror=implicit-function-declaration'

* Add '-Qunused-arguments'
2020-01-28 15:06:37 -06:00