Commit graph

17463 commits

Author SHA1 Message Date
Scott Wittenburg
d9e0718c9d Allow overridable global runner attributes 2020-09-14 10:37:42 -06:00
Scott Wittenburg
e686f1500e Update pipeline documentation to describe user-provided scripts 2020-09-14 10:37:42 -06:00
Scott Wittenburg
e18612a321 Add test for variable interpolation and scripts 2020-09-14 10:37:42 -06:00
Scott Wittenburg
2386f7582a Support variable interpolation at pipeline generation time 2020-09-14 10:37:42 -06:00
Scott Wittenburg
ace52bd476 Provide your own script, before_script, and after_script 2020-09-14 10:37:42 -06:00
Massimiliano Culpo
4ca7d46e15
Fix a typo in test/concretize.pyi (#18662) 2020-09-14 09:58:14 -05:00
darmac
5f47170492
Add new package: webbench (#18650)
* Add new package: webbench

* Update var/spack/repos/builtin/packages/webbench/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-14 09:57:40 -05:00
ketsubouchi
41b68741ec
cpio: add --rtlib=compiler-rt for %fj (#18619)
* cpio: add --rtlib=compiler-rt for %fj

* cpio: simplify if

* Update var/spack/repos/builtin/packages/cpio/package.py

This seems better.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-14 09:55:47 -05:00
t-nojiri
a250006449
ngmlr: support for aarch64 (#18621)
* ngmlr: support for aarch64

* ngmlr: Fixed patch file
2020-09-13 23:14:59 -05:00
ketsubouchi
3cfce42563
nek5000: Support Fujitsu fortran (#18659) 2020-09-13 23:14:04 -05:00
Paul
c29b74e7ad
Updated FZF package for newer versions. (#18608)
* Support for external find.
* Added latest version (0.22.0) and conditions to package to continue
support for older versions.
2020-09-13 11:27:56 -05:00
Joseph Wang
58f101de88
use github for download (#18657) 2020-09-13 10:23:46 -05:00
Andrew W Elble
a734dabf2b
new package: py-reproject (#18641)
* new package: py-reproject
add setuptools build/run dep to py-astropy-healpix

* fixes

* fix
2020-09-12 15:37:34 -05:00
darmac
85f7a8bf71
Add new package: delta (#18648) 2020-09-12 15:37:14 -05:00
darmac
10dab474ce
cvs: add a patch for segv issue (#18649) 2020-09-12 09:47:39 -05:00
darmac
e355fc16ad
Add new package: dbxtool (#18651) 2020-09-12 09:45:05 -05:00
darmac
3211ac5136
Add new package: geoip-api-c (#18653) 2020-09-12 09:44:28 -05:00
darmac
cde4654525
Add new package: libspiro (#18654) 2020-09-12 09:44:02 -05:00
darmac
6d39e6ebea
Add new package: hping (#18311)
* Add new package: hping

* Update var/spack/repos/builtin/packages/hping/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/hping/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

Fix flake8 errors

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-12 09:36:30 -05:00
darmac
128731ec74
Add new package: jetty-project (#18555)
* Add new package: jetty-project

* refine dependency

* refine maven version
2020-09-12 09:35:38 -05:00
Richarda Butler
8116153f2a
bugfix: include configuration ignoring files with the same basename (#18487)
* Use the config path instead of the basename

* Removing unused variables

Co-authored-by: Greg Becker <becker33@llnl.gov>

* Test
Making sure if there are 2 include config files with the same basename they are both implemented

* Edit test assert

Co-authored-by: Greg Becker <becker33@llnl.gov>
2020-09-11 16:45:36 -07:00
Robert Blake
afb0883762
ncurses: adding external support. (#18609)
* ncurses: adding external support.

* Update var/spack/repos/builtin/packages/ncurses/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/ncurses/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/ncurses/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Fixing includes.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-11 16:00:11 -05:00
Massimiliano Culpo
8ad2cc2acf
Environments: Avoid inconsistent state on failed write (#18538)
Fixes #18441 

When writing an environment, there are cases where the lock file for
the environment may be removed. In this case there was a period 
between removing the lock file and writing the new manifest file
where an exception could leave the manifest in its old state (in
which case the lock and manifest would be out of sync).

This adds a context manager which is used to restore the prior lock
file state in cases where the manifest file cannot be written.
2020-09-11 10:57:29 -07:00
Adam J. Stewart
e7040467f2
NumPy: added v1.19.2 (#18615) 2020-09-11 15:38:24 +02:00
srekolam
1aceb38b89
Changes for hipsparse, rocthrust recipes for rocm_3.7.0 (#18497)
* changes for hipsparse,rocthrust recipes for rocm_3.7.0

* changes to rocrand for 3.7.0

* version changes
2020-09-10 17:33:21 -05:00
srekolam
4a474d9d67
recipes changes for hipblas, rocprim, rocfft, rocsolver for rocm3.7.0 (#18495)
* recipes changes for rocprim,rocfft,rocsolver for rocm3.7.0

* changes to hipcub recipe for rocm-3.7.0

* changes to address review comments
2020-09-10 17:32:41 -05:00
Robert Pavel
29645ceba5
Adding Missing Versions for Flux-Sched/Flux-Core and Compiler Flags (#18612)
* Checksummed New Flux Versions

Checksummed new flux versions to let spack detect them

* Added CXXFlags to build Flux-sched

Added missing cxxflags to build flux-sched
2020-09-10 16:53:28 -05:00
Robert Pavel
3fabdb6e9b
Adding Cuda Variant to SW4Lite (#18590)
* Adding Cuda Variant to SW4Lite

Added cuda variant of sw4lite  as per guidance in README

* Updated SW4Lite+cuda to Current Header Conventions

Updated sw4lite+cuda to use current conventions for spackage include
dirs

* Fixing FLake8 Issue with Sw4lite+cuda Fix

Fixed overly long line and further underlined sticky note reminding me
to run flake8 BEFORE pushing

* Switching to Spack Compiler Wrapper

Switching to spack compiler wrapper for consistency
2020-09-10 16:53:13 -05:00
Tim Haines
ff6ca57dda
Dyninst: add v10.2.1 (#18611) 2020-09-10 16:09:06 -05:00
Rémi Lacroix
114317464b
Orca: update the package. (#18593)
* Orca: Add new versions.

* Orca: Support OpenMPI without the legacy wrappers.

By default, Spack builds OpenMPI without the legacy wrappers when using the Slurm scheduler. This breaks Orca since its binaries are hardcoded to call "mpirun". To workaround this issue, add a "mpirun" wrapper which calls "srun" when required.
2020-09-10 11:55:13 -05:00
Johannes Blaschke
757dad370f
Bugfix for fish support: overly zealous arg matching (#18528)
* bugfix for issue 18369

* fix typo

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-10 10:01:44 -05:00
Tiziano Müller
2bc9821c43
update CP2K pkg for 8+ (#18607)
* cp2k: do not support ~openmp for v8+

* sirius: version bump

* cp2k: fix overlapping deps for elpa

fixes #18029

* cp2k: update SIRIUS dependency for v8+

* spfft: requires CMake 3.11+

* cp2k: fix build with +sirius
2020-09-10 10:00:31 -05:00
Toyohisa Kameyama
34f4049815
dpdk: Avoid option conflicts between spack wrappers and Makefiles on aarch64 gcc. (#18603) 2020-09-10 09:59:18 -05:00
t-nojiri
e13e2b0d54
prism: support for aarch64 (#18562)
* prism: support for aarch64

* prism: Change patch file.
2020-09-10 09:56:19 -05:00
Adam J. Stewart
25291cf01c
GDAL: fixed Java bindings, added v3.1.3 (#18494) 2020-09-10 15:08:24 +02:00
Tomoki, Karatsu
778e659a03
openfoam: Set 'FOAM_SIGFPE' when using Fujitsu compiler. (#18601) 2020-09-10 15:01:50 +02:00
Tomoki, Karatsu
d4535f3115
fj: fixed homepage URL. (#18602) 2020-09-10 14:55:52 +02:00
Fabian Brandt
fc919e490e
NetworKit: update to v7.1, including dependencies (#18604) 2020-09-10 14:53:16 +02:00
srekolam
651cffae0a
Rocprofiler changes for rocm-3.7.0 release (#18599)
* rocprofiler changes for rocm-3.7.0 release

* fix flake8 errors
2020-09-09 21:43:07 -05:00
Brian Van Essen
87dc324f36
Support older cuda arch capabilties. (#18597) 2020-09-09 21:42:34 -05:00
ketsubouchi
b014ffcd3d
darshan-util: remove return(-1) from void function (#18504)
* darshan-util: remove return(-1) from void function

* Update var/spack/repos/builtin/packages/darshan-util/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/darshan-util/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-09 21:03:59 -05:00
psakievich
7b2c59e6cf
Fix typo in nalu-wind package (#18596) 2020-09-09 19:12:14 -05:00
Paul
9eac1ed6a8
Support external find for gpgme. (#18594) 2020-09-09 17:39:33 -05:00
Christoph Junghans
691e46c4f5
Packages/gamess ri mp2 mini app (#18595)
* gamess-ri-mp2-miniapp: initial import

* flake8

* Update var/spack/repos/builtin/packages/gamess-ri-mp2-miniapp/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-09-09 16:10:59 -06:00
Glenn Johnson
f1652e89af
Add new versions of intel-mkl (#18592) 2020-09-09 15:27:36 -05:00
arjun-raj-kuppala
9c8cfcca0f
Adding hipify-clang and aomp recipe for rocm (#18333)
* Adding aomp recipe for rocm 3.5.0 release

* hipify-clang rocm recipe

* incorporated suggested changes on PR#18333 for rocm aomp recipe

* remove binutils dependency and update to devicelibs tar path
2020-09-09 13:47:51 -05:00
Jen Herting
857530c5ae
[parallel] added version 20200822 (#18591) 2020-09-09 10:58:07 -07:00
Robert Brunner
1ae50f8022
Added specific "@master" version specifier for component libraries when building (#18579)
the develop version of SCR
2020-09-09 12:52:36 -05:00
Jen Herting
f7d1f845f4
[py-thinc] fixed checksum (#18571) 2020-09-09 11:25:06 -05:00
Rémi Lacroix
fa04ad5d92
tcl module files: fix configuration overriding (#18514)
This is a special case of overriding since each section is being matched with the current spec.

The trailing ':' for sections with override is now removed when parsing the configuration so the special handling for the modules configuration stopped working but it went unnoticed.
2020-09-09 18:05:58 +02:00