Commit graph

6729 commits

Author SHA1 Message Date
Glenn Johnson
851b58248d Build pkg-config files for ncurses (#1673) 2016-09-21 04:02:07 -07:00
Elizabeth Fischer
899f3a7e37 Fixed bug propagating --dirty flag to sub-installs. (#1625)
* Fixed bug propagating --dirty flag to sub-installs.

* Fix syntax error

* Allow --dirty flag to be set with SPACK_DIRTY env var.

* Added dirty flag to `spack diy` and `spack setup`, as is currently in `spack install`

* flake8
2016-09-21 03:56:56 -07:00
Glenn Johnson
73012ec4c8 Rework libgd package (#1679)
* Added missing libtiff dependency
* added dependency on fontconfig
* Added version 2.2.3
* use autotools rather than cmake

The cmake build was not producing a complete install.
* There was no versioning of the installed libraries.
* gdlib-config was missing
* pkgconfig directory was missing

These problems do not happen when built with autotools.
2016-09-21 01:56:20 -07:00
Matt Belhorn
94b24e8893 Adds all available CrayPE CPU targets to platform by default. (#1745) 2016-09-21 01:48:33 -07:00
Todd Gamblin
ae6252ca5f Merge branch 'efischer/160914-FixBinutils226Question' of git://github.com/citibeth/spack into bugfix/efischer-160914-FixBinutils226Question 2016-09-21 01:45:38 -07:00
Axel Huebl
d3e04b3daf Close #1683 Apply ADIOS 1.10.0 Patch (HDF5 1.10+) (#1699)
* Close #1683 Apply ADIOS 1.10.0 Patch

Also correct version dependencies and comments.

* Clean Up ADIOS

- add develop
- simplify HDF5 options (parallel only)
- remove optional netCDF (not fully v4)
2016-09-21 00:55:54 -07:00
Massimiliano Culpo
3254d2f8f9 cp2k : added dependencies (#1724)
* wannier90 : added package (#24)

* wannier90 : added package

* cp2k : added dependency on wannier90

* elpa : updated package, added cp2k dependency (#26)

Conflicts:
	var/spack/repos/builtin/packages/elpa/package.py
2016-09-21 00:53:06 -07:00
Alfredo Adolfo Gimenez
02307cf7ce Set JAVA_HOME on module load and on dependent installs. (#1716)
* Set JAVA_HOME on module load and on dependent installs.

* Include environment setup from dependencies in dependee module (#1714)
2016-09-21 00:52:09 -07:00
Massimiliano Culpo
1cc48bf7d7 grackle : added package (#1725)
Modifications :

* grackle : added package
* grackle : added version 2.2
2016-09-21 00:51:49 -07:00
Erik Schnetter
3c7ea3000a Wrap yt package (#1751)
yt is a python package for analyzing and visualizing volumetric, multi-resolution data from astrophysical simulations, radio telescopes, and a burgeoning interdisciplinary community.
2016-09-21 00:37:46 -07:00
Sergey Kosukhin
746495896c Qt library: added variant to enable/disable compilation of examples (#1763) 2016-09-21 00:25:14 -07:00
Patrick Gartung
e6dc448f18 Compiling python with gnu c++ on macos fails with toolboxglue enabled. 2016-09-20 23:34:15 -07:00
Denis Davydov
27801c354b fix MacOs class for Sierra (#1811) 2016-09-20 17:25:23 -07:00
Gregory L. Lee
25ee9456f5 added STAT release 3.0.0 2016-09-20 16:09:31 -07:00
Erik Schnetter
ef1f441424 Julia: Add version 0.5.0 (#1809) 2016-09-20 12:40:58 -07:00
Adam J. Stewart
db483e77e4 Remove url_for_version as it breaks spack info (#1503) 2016-09-20 10:17:51 -07:00
Joseph Ciurej
7f9e89eb53 Update Package: Git-LFS (#1769)
* Fixed a few small bugs in the 'git-lfs' install script.

* Fixed a bug in the '(go|go-bootstrap)@1.4.2+test' install scripts.

* Fixing a minor style issue in the 'git-lfs' install script.
2016-09-20 10:08:25 -07:00
Erik Schnetter
00bac8f294 PETSc: Explicitly point to cpp when configuring (#1807)
I encountered an HPC system where PETSc's configure stage does not find a valid `cpp` (C preprocessor). Explicitly pointing to Spack's `cpp` wrapper resolves the problem.
2016-09-20 10:05:57 -07:00
Adam J. Stewart
f180d748be Remove lingering boilerplate FIXMEs (#1756) 2016-09-20 08:01:55 -07:00
Massimiliano Culpo
eb8a0ef75e fix : failing unit tests due to missing self (#1806) 2016-09-20 07:47:13 -07:00
Joseph Ciurej
2cbae1d691 Update Package: Metis (#1783)
* Fixed a bug that was causing post-install METIS tests to fail.

* Improved the patching procedure used in the 'metis' install script.

* Enabled patch skipping for the 'metis' and 'parmetis' packages.

* Fixed some minor style issues in the 'parmetis' package.

* Improved the 'metis' test fix and added 'run_tests' support.
2016-09-20 02:48:31 -07:00
Robert D. French
5c11fe88df Add UberFTP utility (#1780) 2016-09-20 02:47:10 -07:00
Denis Davydov
1565a643bd dealii: add 8.4.2 (#1782) 2016-09-20 02:46:57 -07:00
Bruno Turcksin
20fcd3f1dd Add Python support to gdb. (#1790) 2016-09-20 02:46:30 -07:00
Joseph Ciurej
e73a7c80bf Update Package : Zoltan (#1793)
* Refactored and reorganized the 'zoltan' install script.

* Fixed a few bugs with the '+mpi' and '+fortan' variants of 'zoltan'.

* Reintroduced and improved the '+shared' variant for the 'zoltan' package.

* Improved compatibility with different MPI providers for 'zoltan'.
2016-09-20 02:46:13 -07:00
Eric
c9fe2cd469 Fix format string (in class RemoveFailedError) (#1803) 2016-09-20 02:27:35 -07:00
Tom Merrick
d71f8dcab5 samtools could not find the ncurses library (#1785) 2016-09-20 02:27:19 -07:00
Massimiliano Culpo
ea446c0f0e lmod : added support for the creation of hierarchical lua module files (#1723)
Includes :
- treatment of a generic hierarchy (i.e. lapack + mpi + compiler)
- possibility to specify which compilers are to be considered Core
- correct treatment of the 'family' directive
- unit tests for most new features
2016-09-20 02:26:25 -07:00
Eric
efadc0e299 Allow multi-user installations (#1804)
When re-using previously downloaded tarballs, spack copies from
`var/spack/stage/PACKAGE-VERSION-HASH/downloaded_file` to
`var/spack/cache/PACKAGE/downloaded_file`. This fails if the source is owned by
a different user (`shutil.copy` tries to retain all meta data including file
ownership). Change to a non-meta-data copy function (`shutil.copyfile`).
2016-09-20 02:18:26 -07:00
Erik Schnetter
bd6aac3102 Update Julia to 0.4.7 (#1805) 2016-09-20 02:16:25 -07:00
Erik Schnetter
bddb15ef4c Make VisIt build again (#1762)
- add new version 2.10.3
- explicitly require hdf5 variant ~mpi, since we don't know how to build with mpicc
- explicitly disable glew since it may not be installed
2016-09-20 02:15:58 -07:00
Erik Schnetter
70424b511e Work around cmake problems in VTK (#1761)
The cmake scripts can't handle the semicolons in gcc's version output. Filter them out before detecting the version.
2016-09-20 02:15:37 -07:00
Erik Schnetter
2a558e9d7a Tighten HDF5 version requirements for Silo (#1760) 2016-09-20 02:14:55 -07:00
Erik Schnetter
8426b65592 Make cmake @2.8 build again (#1759) 2016-09-20 02:14:37 -07:00
Erik Schnetter
140f1773cf Update hwloc to 1.11.4 (#1752) 2016-09-20 02:14:17 -07:00
Erik Schnetter
682ac5194e Declare py-beautifulsoup4's dependency on py-setuptools (#1748) 2016-09-20 02:14:06 -07:00
Erik Schnetter
48c87da07b Update curl to 7.50.3 (#1747)
* Update curl to 7.50.2
* Update curl to 7.50.3
2016-09-20 02:13:54 -07:00
Erik Schnetter
bbdc429db3 Update OpenMPI to 2.0.1 (#1721) 2016-09-20 02:13:40 -07:00
Erik Schnetter
2e490050f6 Update OpenBLAS to 0.2.19 (#1702) 2016-09-20 02:13:25 -07:00
Erik Schnetter
ebde2a101e Reorder versions in openssl (#1601) 2016-09-20 02:13:14 -07:00
Erik Schnetter
ee2ddaa7cc Update mbedtls to 2.3.0 (#1600) 2016-09-20 02:13:03 -07:00
Erik Schnetter
6848752fed Update cereal to 1.2.1 (#1599) 2016-09-20 02:12:52 -07:00
Erik Schnetter
dfad4a0abc Update binutils to 2.27 (#1598) 2016-09-20 02:12:40 -07:00
Michael Kuhn
7043fff807 Fix location -p and -P (#1776) 2016-09-15 10:48:28 +08:00
Michael Kuhn
7fd44a983d Update mvapich2 to 2.2 (#1775) 2016-09-15 10:42:57 +08:00
Erik Schnetter
6117ef44e4 Make libstdc++-detection work on Darwin (#1778) 2016-09-15 10:42:14 +08:00
Elizabeth Fischer
2a823fbdfd [RtM] Added py-proj/package.py (RtM = Ready to Merge) (#717)
* Added py-proj package

* Added bug-fix patched version to the package.

* Removed dependency of py-proj on proj.

* py-proj: Added missing dependency

* py-proj: Removed versions from forked repos, now that necessary bug fixes have been merged into the main repo.

* Update package.py

Added a blank line that Travis wanted.

* 1. Added copyright
2. Used setup_py
3. Added type='build' for dependencies.
2016-09-15 10:35:57 +08:00
Elizabeth Fischer
a954d0976a Put back full-length URL. 2016-09-14 16:52:33 -04:00
Elizabeth Fischer
595ec7e034 Bug fix capturing which packages work with which binutils. 2016-09-14 16:50:17 -04:00
Elizabeth Fischer
4a1df7e0b2 Resolved issues of py-pillow, py-scipy and binutils dependencies. Resolves #1506
py-pillow: Remove version dependency on binutils@2.25.  In tests, it works just fine with binutils@2.26.

Fixed flake8 issues.
2016-09-14 10:56:08 -04:00