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Author SHA1 Message Date
eugeneswalker
999c460b1e
e4s ci: add mfem +rocm (#31604) 2022-10-29 23:32:46 +00:00
Veselin Dobrev
82470f880a
New MFEM version: 4.5 (#33480) 
* New MFEM version: 4.5

Add new MFEM variants: ginkgo, hiop

* mfem: small tweaks

* mfem: tweak testing script

* mfem: try to resolve issue #30483

* mfem: fix style

* mfem: tweak for Spack-built hipsparse

Co-authored-by: eugeneswalker <38933153+eugeneswalker@users.noreply.github.com>
 2022-10-29 13:22:25 -07:00
eugeneswalker
e5274de7ec
unifyfs %oneapi: -Wno-error=deprecated-non-prototype,unused-function (#33602) 2022-10-29 13:19:27 -07:00
eugeneswalker
23aada1d24
gettext: constrain nvhpc patch to @:0.20.0 (#33489) 2022-10-29 21:41:10 +02:00
Massimiliano Culpo
7e645f54c5
Deprecate spack bootstrap trust/untrust (#33600) 
* Deprecate spack bootstrap trust/untrust
* Update CI
* Update tests
 2022-10-29 12:24:26 -07:00
Sergey Kosukhin
29f1e8395c
mpich: fix rpath flags in mpif90 when building with oneapi (#33319) 
Co-authored-by: eugeneswalker <38933153+eugeneswalker@users.noreply.github.com>
 2022-10-29 12:17:43 -06:00
Jonas Thies
83b49070e6
phist: add/update conflicts with cray-libsci and/or python@3.11: for … (#33587) 
* phist: add/update conflicts with cray-libsci and/or python@3.11: for versions <1.11.2

* phist: style fix
 2022-10-29 10:12:26 -07:00
eugeneswalker
ef8c15c5ef
czmq %oneapi: -Wno-error: gnu-null-pointer-arithmetic, strict-prototypes (#33586) 2022-10-29 06:14:15 -06:00
eugeneswalker
c10d525956
json-c %oneapi: add -Wno-error=implicit-function-declaration (#33585) 2022-10-29 06:13:54 -06:00
Satish Balay
6edb20c7a6
mumps: update URLs, and add versions 5.5.0, 5.5.1 (#33597) 2022-10-29 11:34:45 +02:00
Axel Huebl
b06c5a43d9
WarpX 22.10 & PICMI-Standard (#33594) 
Update `warpx` & `py-warpx` to the latest release, `22.10`.
Update `py-picmistandard` accordingly.
 2022-10-29 11:27:46 +02:00
Adam J. Stewart
06bac4a487
libtiff: CMake support, internal codecs variants (#33591) 2022-10-29 06:36:14 +02:00
Brian Van Essen
6c5a7fefd6
Fixed a bad variant when statement for including cuDNN. (#33595) 2022-10-28 13:21:50 -06:00
Luke Diorio-Toth
04f87da36b
new packages (py-auditwheel, py-medaka, py-parasail, py-progressbar33, py-pyspoa) and updates to others (py-scikit-build, py-ont-fast5-api) (#33541) 
* Added py-medaka and dependencies

* fixed py-parasail build error

* medaka still doesn't have correct linked libdeflate

* fixed pyspoa deps

* added htslib.patch, confirmed builds and runs

* fixed style

* Update var/spack/repos/builtin/packages/py-auditwheel/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* made requested changes

* added targets for pyspoa dep

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2022-10-28 14:05:15 -05:00
Satish Balay
f74a6a4503
netlib-scalapack: fix build error with oneapi compilers (#33539) 
/home/xsdk/spack.x/lib/spack/env/oneapi/icx -DAdd_ -Dscalapack_EXPORTS -I/opt/intel/oneapi/mpi/2021.7.0/include -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/scalapack.dir/BLACS/SRC/dgamx2d_.c.o -MF CMakeFiles/scalapack.dir/BLACS/SRC/dgamx2d_.c.o.d -o CMakeFiles/scalapack.dir/BLACS/SRC/dgamx2d_.c.o -c /home/xsdk/spack.x/spack-stage/spack-stage-netlib-scalapack-2.2.0-uj3jepiowz5is4hmdmjrzjltetgdr3lx/spack-src/BLACS/SRC/dgamx2d_.c
/home/xsdk/spack.x/spack-stage/spack-stage-netlib-scalapack-2.2.0-uj3jepiowz5is4hmdmjrzjltetgdr3lx/spack-src/BLACS/SRC/igsum2d_.c:154:7: error: call to undeclared function 'BI_imvcopy'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
      BI_imvcopy(Mpval(m), Mpval(n), A, tlda, bp->Buff);
      ^
 2022-10-28 10:13:51 -06:00
Lucas Nesi
b89f6226f8
starpu: add papi and blocking variants (#33580) 2022-10-28 16:43:45 +02:00
Vasileios Karakasis
c772b662c9
ReFrame: add versions up to v3.12.0 (#33446) 
Also adds 4.0 dev versions
 2022-10-28 16:38:29 +02:00
Harmen Stoppels
fa0432c521
gitlab ci: patched make 4.3.0 (#33583) 2022-10-28 14:38:57 +02:00
Harmen Stoppels
21e826f256
patchelf: add v0.16.1 (#33579) 2022-10-28 11:15:06 +02:00
eugeneswalker
0896bf928b
openblas %oneapi: extend application of --Wno-error=implicit-function-declaration (#33576) 2022-10-28 02:05:59 -06:00
Chris White
d4a0f588e9
CachedCMakePackage: Add back initconfig as a defined phase (#33575) 
Also: add type annotation to indicate that "phases" is always a
tuple of strings.
 2022-10-27 23:04:18 -07:00
Adam J. Stewart
b81b54a74c
py-scikit-learn: add v1.1.3 (#33534) 2022-10-27 19:49:43 -06:00
Diego Alvarez
3ad0952956
nextflow: add 22.10.1 (#33574) 
* Add nextflow 22.10.1
* Add trailing comma (style)
 2022-10-27 16:41:49 -06:00
Adam J. Stewart
bd51751a8c
GDAL: multi-build system support (#33566) 2022-10-27 16:10:12 -06:00
rfbgo
67585fe13e
Add vasp variant to control shmem compile options (#33531) 
Currently the vasp package always enables the use of shmem to reduce algorithm memory usage (see
https://www.vasp.at/wiki/index.php/Precompiler_options). This is great,but on some systems gives compile errors with the interoperability of C and Fortran. This PR makes that shmem flag optional, but retains the
existing default on behavior.
 2022-10-27 14:59:06 -07:00
Robert Cohn
3e966f2547
support pkgconfig for mkl (#33382) 2022-10-27 15:01:59 -06:00
SoniaScard
600948558d
ophidia-analytics-framework: new package at v1.7 (#33567) 
* ophidia-analytics-framework: new package at v1.7
* Fix code style in ophidia-analytics-framework

Co-authored-by: SoniaScard <SoniaScard@users.noreply.github.com>
Co-authored-by: Donatello Elia <eldoo@users.noreply.github.com>
 2022-10-27 13:42:58 -07:00
Adam J. Stewart
a8c0a662a1
py-torchdata: add v0.5.0 (#33568) 2022-10-27 15:02:46 -05:00
Brian Van Essen
6408b51def
Support ROCm backing in DiHydrogen (#33563) 
* Added support for building the DiHydrogen package and LBANN extensions
to DiHydrogen with ROCm libraries.

Fixed a bug on Cray systems where CMake didn't try hard enough to find
an MPI-compatible compiler wrapper.  Make it look more.

Added support for the roctracer package when using ROCm libraries.

* Fixed how ROCm support is defined for pre-v0.3 versions.
 2022-10-27 21:19:56 +02:00
Stephen McDowell
4be67facdc
ECP-SDK: enable hdf5-vfd-gds when +cuda (#33300) 
- hdf5-vfd-gds:
    - Add new version 1.0.2 compatible with hdf5@1.13.
    - CMake is a build dependency.
    - Set `HDF5_PLUGIN_PATH` in the runtime environment, this plugin
      is loaded dynamically.
- SDK:
    - The VFD GDS driver only has utility when CUDA is enabled.
    - Require hdf5-vfd-gds@1.0.2+ (1.0.1 and earlier do not compile).
 2022-10-27 13:51:19 -05:00
Carson Woods
13636a2094
Add new versions to wi4mpi (#33569) 2022-10-27 11:32:20 -07:00
Massimiliano Culpo
ec50906943
Update macOS Python version in CI to 3.10 (#33560) 2022-10-27 20:25:26 +02:00
Ben Boeckel
ea1719d986
Paraview catalyst support (#33369) 
* paraview: add support for Catalyst 1 APIs

* paraview: add support for libcatalyst impl support
 2022-10-27 12:18:16 -06:00
Miroslav Stoyanov
6f4d69cf8d
new version and rocm fix (#33536) 2022-10-27 10:18:44 -07:00
Luke Diorio-Toth
57226a870b
py-ncbi-genome-download: new package (#33511) 
* py-ncbi-genome-download: new package

* fixed style
 2022-10-27 11:51:36 -05:00
Satish Balay
34d55af55d
phist: add v1.11.2 (#33561) 2022-10-27 11:44:51 -05:00
Brian Van Essen
5f99d3dfaa
spdlog: allow using vendored fmt library (#33379) 2022-10-27 11:13:07 -05:00
Lucas Nesi
86337f042e
chameleon: correct chameleon+simgrid build (#33559) 
* chameleon: correct chameleon+simgrid build
* chameleon: remove unused declarations
 2022-10-27 08:59:06 -07:00
SoniaScard
2960d8ac0a
ophidia-io-server: new package at v1.7 (#33436) 
Co-authored-by: SoniaScard <SoniaScard@users.noreply.github.com>
 2022-10-27 17:52:49 +02:00
psakievich
b9bee70a97
curl: stop auto generating file named str (#33532) 
Calling `determine_variants` from the `curl` package autogenerates an empty file every time it is called.
 2022-10-27 17:33:51 +02:00
ryandanehy
5a939d9c94
exago, hiop: propagate build type (#32750) 2022-10-27 17:14:09 +02:00
Satish Balay
6cb4a00280
petsc+kokkos: pass in cuda_arch, rocm_arch to kokkos (#33530) 
Also remove dependency on kokkos+wrapper
 2022-10-27 17:02:36 +02:00
Lucas Nesi
ecdfe02355
starpu: correct fxt dependency variant when simgrid (#33558) 2022-10-27 09:02:09 -06:00
Massimiliano Culpo
b19549ce9d
suite-sparse: add versions up to v5.13.0 (#33550) 2022-10-27 17:01:50 +02:00
G-Ragghianti
590c4e35ca
Package slate: added requirements for cuda_arch (#33554) 2022-10-27 08:54:16 -06:00
Lucas Nesi
41d53b85f8
simgrid: add v3.32 (#33557) 2022-10-27 08:46:54 -06:00
Mosè Giordano
07d9c254a2
intel-mpi: add cpio as build dependency (#33555) 2022-10-27 08:26:06 -06:00
Massimiliano Culpo
9a51d42cec
oce: rework recipe to prefer old intel-tbb (#33553) 2022-10-27 15:34:47 +02:00
Satish Balay
883b7cfa29
hiop: add version 0.7.1 (#33543) 2022-10-27 15:00:15 +02:00
Massimiliano Culpo
605411a9fb
LuaPackage: add missing attribute (#33551) 
fixes #33544
 2022-10-27 06:17:54 -06:00