Commit graph

31147 commits

Author SHA1 Message Date
snehring
c9849dd41d
tmalign: new version 20220412 (#37645) 2023-05-15 10:14:58 -07:00
Chris Green
d44e97d3f2
[scitokens-cpp] New variant cxxstd, depend on standalone jwt-cpp (#37643)
* Add FNAL Spack team to maintainers
* New variant `cxxstd`
* Depend on `jwt-cpp`
* New versions: 0.7.2, 0.7.3
2023-05-15 13:08:00 -04:00
Adam J. Stewart
8713ab0f67
py-timm: add v0.9 (#37654)
* py-timm: add v0.9
* add v0.9.1 and v0.9.2
* add new package py-safetensors (v0.3.1)
2023-05-15 09:41:58 -07:00
Harmen Stoppels
6a47339bf8
oneapi: before script load modules (#37678) 2023-05-15 18:39:58 +02:00
Alec Scott
1c0fb6d641
amrfinder: add v3.11.8 (#37656) 2023-05-15 09:38:29 -07:00
Alec Scott
b45eee29eb
canal: add v1.1.6 (#37657) 2023-05-15 09:36:17 -07:00
Alec Scott
6d26274459
code-server: add v4.12.0 (#37658) 2023-05-15 09:35:17 -07:00
Alec Scott
2fb07de7bc
fplll: add v5.4.4 (#37659) 2023-05-15 09:34:13 -07:00
Alec Scott
7678dc6b49
iso-codes: add v4.15.0 (#37661) 2023-05-15 09:27:05 -07:00
Frank Willmore
1944dd55a7
Update package.py for maker (#37662) 2023-05-15 09:25:43 -07:00
Adam J. Stewart
0b6c724743
py-sphinx: add v7.0.1 (#37665) 2023-05-15 09:23:22 -07:00
eugeneswalker
fa98023375
new pkg: py-psana (#37666) 2023-05-15 09:19:54 -07:00
Todd Gamblin
e79a911bac bugfix: allow reuse of packages from foreign namespaces
We currently throw a nasty error if you try to reuse packages from some other namespace
(e.g., OLCF), but we should be able to reuse patched local versions of builtin packages.

Right now the only obstacle to that is that we try to look up virtual info for unknown
namespaces, and we can't get the package from the repo to do that. We *can* assume that
a package with a known namespace is similar, and that its virtual provider information
is reasonably accurate, so we now do that. This isn't 100% accurate, but neither is
relying on the package itself, as it may have gone out of date.

The real solution here is virtual edge information, but this is a stopgap until we have
that.
2023-05-15 09:15:49 -07:00
Todd Gamblin
fd3efc71fd bugfix: don't look up virtual information for unknown packages
`spec_clauses()` attempts to look up package information for concrete specs in order to
determine which virtuals they may provide. This fails for renamed/deleted dependencies
of buildcaches and installed packages.

This will eventually be fixed by #35258, which adds virtual information on edges, but we
need a workaround to make older buildcaches usable.

- [x] make an exception for renamed packages and omit their virtual constraints
- [x] add a note that this will be solved by adding virtuals to edges
2023-05-15 09:15:49 -07:00
Todd Gamblin
0458de18de bugfix: don't look up patches from packages for concrete specs
The concretizer can fail with `reuse:true` if a buildcache or installation contains a
package with a dependency that has been renamed or deleted in the main repo (e.g.,
`netcdf` was refactored to `netcdf-c`, `netcdf-fortran`, etc., but there are still
binary packages with dependencies called `netcdf`).

We should still be able to install things for which we are missing `package.py` files.

`Spec.inject_patches_variant()` was failing this requirement by attempting to look up
the package class for concrete specs.  This isn't needed -- we can skip it.

- [x] swap two conditions in `Spec.inject_patches_variant()`
2023-05-15 09:15:49 -07:00
Vanessasaurus
f94ac8c770
add new package flux-security (#37668)
I will follow this up with a variant to flux-core to add flux-security, and then automation in the flux-framework/spack repository.

Signed-off-by: vsoch <vsoch@users.noreply.github.com>
Co-authored-by: vsoch <vsoch@users.noreply.github.com>
2023-05-15 09:14:44 -07:00
Andrew W Elble
a03c28a916
routinator: update, deprecate old version (#37676) 2023-05-15 09:10:40 -07:00
Victor Lopez Herrero
7b7fdf27f3
dlb: add v3.3 (#37677) 2023-05-15 09:08:57 -07:00
Sergey Kosukhin
192e564e26
hdf5: fix showconfig (#34920)
Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2023-05-15 11:03:03 -05:00
Chris Green
b8c5099cde
[jwt-cpp] New package (#37641)
* [jwt-cpp] New package

* Update homepage

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* [@spackbot] updating style on behalf of greenc-FNAL

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
Co-authored-by: greenc-FNAL <greenc-FNAL@users.noreply.github.com>
2023-05-15 10:16:11 -05:00
Stephen Sachs
ea5bca9067
palace: add v0.11.1 and explicit BLAS support (#37605) 2023-05-15 16:11:50 +02:00
Harmen Stoppels
e33eafd34f
Bump tutorial command (#37674) 2023-05-15 13:54:52 +02:00
Xavier Delaruelle
e1344b5497
environment-modules: add version 5.3.0 (#37671) 2023-05-15 09:32:53 +02:00
Todd Gamblin
cf9dc3fc81
spack find: get rid of @= in arch/compiler headers (#37672)
The @= in `spack find` output adds a bit of noise. Remove it as we
did for `spack spec` and `spack concretize`.

This modifies display_specs so it actually covers other places we use that routine, as
well, e.g., `spack buildcache list`.

before:

```
-- linux-ubuntu20.04-aarch64 / gcc@=11.1.0 -----------------------
ofdlcpi libpressio@0.88.0
```

after:

```
-- linux-ubuntu20.04-aarch64 / gcc@11.1.0 -----------------------
ofdlcpi libpressio@0.88.0
```
2023-05-15 09:08:50 +02:00
Bruno Turcksin
d265dd2487
Kokkos: add new release and new architectures (#37650) 2023-05-14 13:21:40 -07:00
Greg Becker
a2a6e65e27
concretizer: don't change concrete environments without --force (#37438)
If a user does not explicitly `--force` the concretization of an entire environment,
Spack will try to reuse the concrete specs that are already in the lockfile.

---------

Co-authored-by: becker33 <becker33@users.noreply.github.com>
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2023-05-14 13:36:03 +02:00
Paul R. C. Kent
0085280db8
gcc: add 12.3.0 (#37553) 2023-05-14 12:08:41 +02:00
Andrew W Elble
6e07bf149d
freecad: new package w/ dependencies/updates (#37557)
* freecad: new package w/ dependencies/updates

* review

* symbols/debug variants only when autotools
2023-05-13 21:14:50 -05:00
dale-mittleman
811cd5e7ef
Adding librdkafka versions 1.9.2, 2.0.2 (#37501)
Co-authored-by: Alec Scott <hi@alecbcs.com>
2023-05-13 16:00:12 -07:00
Adam J. Stewart
081e21f55e
py-lightly: py-torch~distributed supported in next release (#37558) 2023-05-13 15:49:45 -07:00
Todd Gamblin
c5a24675a1
spack spec: remove noisy @= from output (#37663)
@= is accurate, but noisy. Other UI commands tend not to
print the redundant `@=` for known concrete versions;
make `spack spec` consistent with them.
2023-05-13 11:34:15 -07:00
eugeneswalker
e9bfe5cd35
new pkg: py-psmon (#37652) 2023-05-13 11:16:44 -07:00
eugeneswalker
ca84c96478
new pkg: py-psalg (#37653) 2023-05-13 09:02:57 -07:00
Chris Green
c9a790bce9
[gsoap] New package gSOAP (#37647) 2023-05-13 11:01:50 -05:00
eugeneswalker
91c5b4aeb0
e4s ci stacks: add: hdf5-vol-{log,cache} (#37651) 2023-05-13 04:54:44 +00:00
Larry Knox
c2968b4d8c
Add HDF5 version 1.14.1 (#37579)
* Add HDF5 version 1.14.1
* Update to version HDF5 1.14.1-2.
2023-05-12 20:54:08 -04:00
Scott Wittenburg
c08be95d5e
gitlab ci: release fixes and improvements (#37601)
* gitlab ci: release fixes and improvements

  - use rules to reduce boilerplate in .gitlab-ci.yml
  - support copy-only pipeline jobs
  - make pipelines for release branches rebuild everything
  - make pipelines for protected tags copy-only

* gitlab ci: remove url changes used in testing

* gitlab ci: tag mirrors need public key

Make sure that mirrors associated with release branches and tags
contain the public key needed to verify the signed binaries.  This
also ensures that when stack-specific mirror contents are copied
to the root, the root mirror has the public key as well.

* review: be more specific about tags, curl flags

* Make the check in ci.yaml consistent with the .gitlab-ci.yml

---------

Co-authored-by: Ryan Krattiger <ryan.krattiger@kitware.com>
2023-05-12 15:22:42 -05:00
Lehman Garrison
4e5fb62679
py-asdf: add 2.15.0 and dependencies (#37642)
* py-asdf: add 2.15.0 and dependencies

* py-asdf: PR review
2023-05-12 15:35:22 -04:00
Adam J. Stewart
cafc21c43d
py-lightly: add v1.4.5 (#37625) 2023-05-12 11:39:03 -07:00
Adam J. Stewart
72699b43ab
py-dill: add v0.3.1.1 (#37415) 2023-05-12 11:37:51 -07:00
MatthewLieber
6c85f59a89
Osu/mvapich2.3.7 1 (#37636)
* add 3.0b release

* adding mvapich2 version 2.3.7-1

---------

Co-authored-by: Matt Lieber <lieber.31@osu.edu>
2023-05-12 11:30:05 -07:00
Nathan Hanford
eef2536055
Allow buildcache specs to be referenced by hash (#35042)
Currently, specs on buildcache mirrors must be referenced by their full description. This PR allows buildcache specs to be referenced by their hashes, rather than their full description.

### How it works

Hash resolution has been moved from `SpecParser` into `Spec`, and now includes the ability to execute a `BinaryCacheQuery` after checking the local store, but before concluding that the hash doesn't exist.

### Side-effects of Proposed Changes

Failures will take longer when nonexistent hashes are parsed, as mirrors will now be scanned.

### Other Changes

- `BinaryCacheIndex.update` has been modified to fail appropriately only when mirrors have been configured.
- Tests of hash failures have been updated to use `mutable_empty_config` so they don't needlessly search mirrors.
- Documentation has been clarified for `BinaryCacheQuery`, and more documentation has been added to the hash resolution functions added to `Spec`.
2023-05-12 10:27:42 -07:00
Massimiliano Culpo
e2ae60a3b0
Update archspec to v0.2.1 (#37633) 2023-05-12 18:59:58 +02:00
Chris Green
d942fd62b5
[root] New version 6.28.04 with C++20 support (#37640)
* Add FNAL Spack team to maintainers.
* New version 6.28/04.
* Support C++20 with ROOT >= 6.28.04.
2023-05-12 09:50:48 -07:00
Andrey Parfenov
99d511d3b0
Add more variants for STREAM to customize build (#37283)
* Added STREAM builds customization

* Changed stream_type to enum

* fix code style issues

Signed-off-by: Andrey Parfenov <andrey.parfenov@intel.com>

* rm not necessary optimization

Signed-off-by: Andrey Parfenov <andrey.parfenov@intel.com>

---------

Signed-off-by: Andrey Parfenov <andrey.parfenov@intel.com>
Co-authored-by: iermolae <igor.ermolaev@intel.com>
2023-05-12 12:17:59 -04:00
Adam J. Stewart
ab8661533b
GDAL: add v3.7.0 (#37598) 2023-05-12 12:13:10 -04:00
Robert Cohn
f423edd526
intel-oneapi-mkl: support gnu openmp (#37637)
* intel-oneapi-mkl: support gnu openmp

* intel-oneapi-mkl: support gnu openmp
2023-05-12 12:03:19 -04:00
Manuela Kuhn
0a4d4da5ce
py-rsatoolbox: add 0.0.5, 0.1.0 and 0.1.2 (#37595)
* py-rsatoolbox: add 0.0.5, 0.1.0 and 0.1.2 from wheels

* py-setuptools: add 63.4.3

* remove wheels and open up requirements

* Fix style

* Update var/spack/repos/builtin/packages/py-rsatoolbox/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-rsatoolbox/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Change version for python restriction

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-05-12 10:32:12 -05:00
Manuela Kuhn
845187f270
py-mne: add 1.4.0 and py-importlib-resources: add 5.12.0 (#37624)
* py-mne: add 1.4.0 and py-importlib-resources: add 5.12.0

* Fix style

* Update var/spack/repos/builtin/packages/py-mne/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-05-12 10:31:35 -05:00
Lehman Garrison
9b35c3cdcc
Update tensorflow variant defaults to match upstream defaults (#37610)
* Update tensorflow variant defaults to match project's defaults

* Apply code style
2023-05-12 10:27:51 -05:00