Commit graph

21871 commits

Author SHA1 Message Date
Manuela Kuhn
aaad65fbd8
graphviz: add python dependency to fix installation (#24852)
The bootstrap script in the autoreconf procedure calls the
gen_version.py script which requires python 3.6 to process f-strings.
2021-07-13 13:12:10 +00:00
Valentin Volkl
e3e50b3af9
py-awkward: add version 1.4.0 (#24838) 2021-07-13 08:11:59 -05:00
Valentin Volkl
047c9704df
whizard: add version 3.0.1 (#24836) 2021-07-13 08:10:55 -05:00
Valentin Volkl
1ee8947677
gaudi: add version 36.0 (#24840) 2021-07-13 08:31:11 -04:00
Valentin Volkl
7f24feb5a4
cppunit: disable doxygen (#24850) 2021-07-13 08:25:26 -04:00
Todd Gamblin
326fe433b3
Add spack help --spec to README.md (#24849)
We don't really advertise `spack help --spec` enough. I think the README is a good place to start
doing that.
2021-07-13 14:04:41 +02:00
Adam J. Stewart
60765d38d0 Fix KeyboardInterrupt signal for Python 2 2021-07-13 01:17:51 -07:00
Erik Schnetter
667ab50199
c-blosc2: New version 2.0.2 (#24843) 2021-07-12 23:02:36 +00:00
Massimiliano Culpo
3228c35df6
Enable/disable bootstrapping and customize store location (#23677)
* Permit to enable/disable bootstrapping and customize store location

This PR adds configuration handles to allow enabling
and disabling bootstrapping, and to customize the store
location.

* Move bootstrap related configuration into its own YAML file

* Add a bootstrap command to manage configuration
2021-07-12 19:00:37 -04:00
Valentin Volkl
9fb1c3e143
py-uproot: add version 4.0.11 (#24835) 2021-07-12 17:39:22 -05:00
Valentin Volkl
e05be70bcb
py-hepunits: add version 2.1.1 (#24837) 2021-07-12 17:37:37 -05:00
jkelling
81bad21d3a
Update caffe package for cuda9 (#24831)
Add base CudaPackage, cuda_arch
2021-07-12 17:31:38 -05:00
Todd Gamblin
f58b2e03ca
build output: filter padding out of console output when padded_length is used (#24514)
Spack allows users to set `padded_length` to pad out the installation path in
build farms so that any binaries created are more easily relocatable. The issue
with this is that the padding dominates installation output and makes it
difficult to see what is going on. The padding also causes logs to easily
exceed size limits for things like GitLab artifacts.

This PR fixes this by adding a filter in the logger daemon. If you use a
setting like this:

config:
    install_tree:
        padded_length: 512

Then lines like this in the output:

==> [2021-06-23-15:59:05.020387] './configure' '--prefix=/Users/gamblin2/padding-log-test/opt/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_pla/darwin-bigsur-skylake/apple-clang-12.0.5/zlib-1.2.11-74mwnxgn6nujehpyyalhwizwojwn5zga

will be replaced with the much more readable:

==> [2021-06-23-15:59:05.020387] './configure' '--prefix=/Users/gamblin2/padding-log-test/opt/[padded-to-512-chars]/darwin-bigsur-skylake/apple-clang-12.0.5/zlib-1.2.11-74mwnxgn6nujehpyyalhwizwojwn5zga

You can see that the padding has been replaced with `[padded-to-512-chars]` to
indicate the total number of characters in the padded prefix. Over a long log
file, this should save a lot of space and allow us to see error messages in
GitHub/GitLab log output.

The *actual* build logs still have full paths in them. Also lines that are
output by Spack and not by a package build are not filtered and will still
display the fully padded path. There aren't that many of these, so the change
should still help reduce file size and readability quite a bit.
2021-07-12 21:48:52 +00:00
Valentin Volkl
34b763f792
hepmc3: add version 3.2.4 (#24839)
* hepmc3: add version 3.2.4

* hepmc3: clean up legacy arguments from hepmc2 and fix tests
2021-07-12 17:48:09 -04:00
Ryan O'Malley
9d6d2f0f9b
folly: added latest version and switched to CMakePackage (#23938)
* added latest version and switched to CMakePackage

* Added optional dependencies and cxxstd variant

* Added cxxstd variant and optional dependencies

* Added lib. that Boost doesn't install by default

* BUG: Removed previous broken versions of Folly

* BUG: refactored comments

* BUG: Fixed styling errors
2021-07-12 14:13:31 -07:00
Sebastian Schmitt
6d22e9cd7b
Update pathos (#24636)
* Update pathos

* Add build and run
2021-07-12 10:01:43 -05:00
Sebastian Schmitt
1784b05eaf
Update multiprocess (#24634)
* Update multiprocess

* Add build and run
2021-07-12 10:01:13 -05:00
Adam J. Stewart
872785db16
py-sphobjinv: add new package (#24790) 2021-07-12 13:40:32 +02:00
Erik Schnetter
4c7aed5d57
lorene, pgplot: new packages (#24549) 2021-07-12 13:35:43 +02:00
Christoph Conrads
e957c58a1e
Expat: add version 2.4.0, 2.4.1; fix CVE-2013-0340 (#24669)
* Expat: add version 2.4.0, 2.4.1; fix CVE-2013-0340

fixes #24628

* E4S pipeline: update pinned Expat version
2021-07-11 19:43:37 +00:00
Matthew Fernandez
112c1751d7
docs: fix reference to count of system packages (#24821)
015e29efe1 that introduced this section to the
documentation said “two” here instead of the actual count, three.
9f54cea5c5 then added a fourth, BLAS/LAPACK.
Rather than trying to keep this leading count in sync, this change just replaces
the wording with something more generic/stable.
2021-07-11 18:49:19 +00:00
Scott Wittenburg
e0017a6666
Fix out of date remote spec.yamls while updating the index (#24811) 2021-07-10 06:49:09 +00:00
Todd Gamblin
084bafe18c coverage: move config from .coveragerc to pyproject.toml
Getting rid of another top-level file.

`coverage.py` has supported `pyproject.toml` since version 5.0, and
all versions of coverage so far work with python 2.7. We just need to
ensure that a version of coverage with the `toml` extra is installed
in the test environment.

I tested this with `coverage run`, `coverage report`, and `coverage html`.
2021-07-09 22:49:47 -07:00
Vanessasaurus
775c8223c3
debug: initial global debug flag support (#24285)
The developer can export environment variables that
are seen by the compiler wrapper to then add the flags
2021-07-09 21:22:26 -04:00
Greg Becker
ebf2076755
spec.splice: properly handle cached hash invalidations (#24795)
* spec.splice: properly handle cached hash invalidations

* make package_hash a cached hash on the spec
2021-07-10 01:16:48 +00:00
Christoph Junghans
556975564c
votca-tools: fix build with newer gcc/glibc (#24815) 2021-07-10 01:05:30 +00:00
Massimiliano Culpo
d14520d6d8
docker: remove boto3 from CentOS 6 since it requires and updated pip (#24813) 2021-07-10 00:45:30 +00:00
Axel Huebl
78f65e7ce0
openPMD-api: rename develop (#24810)
* openPMD-api: rename develop

Rename to match known Spack version comparison schemes:
```
develop>main>master>head>trunk>9999>0>z>a
```

Currently, the hdf5 patch that is pre-0.14.0 is also applied to
`dev`, which naturally fails (already applied).

* fix dev in warpx
2021-07-09 22:43:28 +00:00
Asher Mancinelli
c9fe3af92d
toml11: New package (#24620) 2021-07-09 14:13:22 -04:00
Manuela Kuhn
c6ffec1d78
py-markupsafe: add 2.0.1 (#24766)
* py-markupsafe: add 2.0.1

* Update var/spack/repos/builtin/packages/py-markupsafe/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-07-09 12:04:36 -06:00
Zack Galbreath
0e177cb95f
ci: tolerate 'InvalidAccessKeyId' (#24741)
Add 'InvalidAccessKeyId' to the list of error messages we expect
and tolerate in push_mirror_contents()
2021-07-09 09:39:16 -07:00
QuellynSnead
72585afcef
hypre: Add new versions (#24625)
* hypre: Add releases 2.21.0 and 2.22.0
2021-07-09 12:25:36 -04:00
Chris White
4037a94d1e
Remove unnecessary compiler id override for XL (#24799) 2021-07-09 09:20:54 -07:00
Adam J. Stewart
b4e757dc35
py-fuzzywuzzy: add new package (#24789) 2021-07-09 17:51:52 +02:00
darmac
d734df705a
libnids: add new package (#22153) 2021-07-09 17:49:10 +02:00
Massimiliano Culpo
2a858f8f3d
docker: Fix CentOS 6 build on Docker Hub (#24804)
This change make yum usable again on CentOS 6
2021-07-09 15:45:46 +00:00
Seth R. Johnson
0edc55adc2
scotch: default to not installing vendored metis/parmetis (#24785) 2021-07-09 11:30:00 -04:00
Hadrien G
7b7f758db3
acts: add v9.01.00 (#24570) 2021-07-09 17:13:35 +02:00
Robert Mijakovic
8cc54036b5
c-blosc2: adds v2.0.1 (#24581)
Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
2021-07-09 17:12:00 +02:00
Miroslav Stoyanov
b3bdc2ef38
heffte: add v2.1.0 (#24599) 2021-07-09 17:11:13 +02:00
Robert Mijakovic
a53f4c36c6
util-macros: new versions, 1.19.2/3 (#24612)
Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
2021-07-09 17:02:45 +02:00
Gabriel Rockefeller
4682ff0cc4
global: add v6.6.6 (#24642) 2021-07-09 16:59:23 +02:00
Manuela Kuhn
fabe86be96
py-bids-validator: add new package (#24677) 2021-07-09 16:58:44 +02:00
Manuela Kuhn
9797c8f060
py-sqlalchemy: add 1.4.20 (#24676)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-07-09 16:58:26 +02:00
Dylan Simon
02c5c76f0b
pthreadpool: enable shared libraries (#24657)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-07-09 16:58:02 +02:00
Simon Frasch
07fab46262
spla: add v1.5.1 (#24661) 2021-07-09 16:54:49 +02:00
Simon Frasch
0edb7937e7
spfft: add v1.0.4 (#24662) 2021-07-09 16:54:37 +02:00
Paul Kuberry
46fa8481d9
trilinos: add a neww maintainer (#24670) 2021-07-09 16:54:06 +02:00
Manuela Kuhn
a2a2d6ab7e
py-aniso8601: add new package (#24672) 2021-07-09 16:53:01 +02:00
Manuela Kuhn
aaeaa0516d
py-jeepney: add v0.6.0 (#24674) 2021-07-09 16:52:49 +02:00