Commit graph

9869 commits

Author SHA1 Message Date
Miles Perry
585c69b94c py-pymysql: new package (#9122)
* py-pymysql: new package

* added type build and run
2018-09-03 20:50:39 -05:00
Geoffrey Oxberry
4bdfa19d97 openblas: add @0.3.1, patch CMake export bug in @0.3.1:0.3.2 (#9123)
* openblas@0.3.1:0.3.2: patch CMake export bug

See https://github.com/xianyi/OpenBLAS/pull/1703.

* openblas@0.3.1: new version
2018-09-03 20:49:45 -05:00
Abhinav Bhatele
ed657e97fa New package: CODES simulation framework (#9133)
* New package: CODES simulation framework

* CODES: add comments

* CODES: remove -fi from extra autoreconf flags
2018-09-03 20:43:50 -05:00
Edoardo Aprà
187e110ab0 NWChem 6.8.1 (#9140) 2018-09-03 20:36:49 -05:00
rice31
6e7af3362e added version for kull support (#9141) 2018-09-03 20:36:15 -05:00
Timo Heister
89c77051fe aspect: new version (#9146) 2018-09-03 20:35:45 -05:00
Jim Galarowicz
ccd96a2fed Update openspeedshop and cbtf version numbers (#9150)
Update the version numbers and now depend on
the develop version of dyninst because of a
feature in openspeedshop depends on new code
in the dyninst develop tree.  Without dyninst
develop, openspeedshop will not build.
2018-09-03 20:35:25 -05:00
Levi Baber
e3bae8f936 py-matplotlib: incorporate 8532 w/ version range (#9151)
* py-matplotlib: Add patch to fix FreeType library detection

Adds patch to add $CPATH to locations searched for FreeType header file

Patch has been upstreamed:
https://github.com/matplotlib/matplotlib/pull/11457

* py-matplotlib: Add patch to fix FreeType library detection

* Make patch only apply to versin 2.2.2 (as already upstreamed)
* Fix flake8 format issue

* py-matplotlib: add range to freetype patch

* py-matplotlib: whitespace
2018-09-03 20:34:41 -05:00
Adam Moody
801f1a0a7d mpifileutils: add v0.8 (#9152) 2018-09-03 20:34:07 -05:00
Matthias Wolf
4df60caf5b msgpack-c, snappy: explicitly depend on googletest (#9167) 2018-09-03 20:25:17 -05:00
David Wells
734d6306a2 Fix two dependencies with silo. (#9153)
1. I presently get errors of the sort

==> Error: KeyError: 'No spec with name mpi in silo@4.10.2%gcc@8.1.0+fortran+mpi
[...]
$HOME/spack/var/spack/repos/builtin/packages/silo/package.py:84, in configure_args:
         81                'FCFLAGS={0}'.format(self.compiler.pic_flag)]
         82
         83        if '+mpi' in self.spec:
  >>     84            config_args.append('CC=%s' % self.spec['mpi'].mpicc)
         85            config_args.append('CXX=%s' % self.spec['mpi'].mpicxx)
         86            config_args.append('FC=%s' % self.spec['mpi'].mpifc)

without the extra explicit MPI dependency.

2. Silo uses zlib, so we should explicitly depend on it.
2018-09-03 16:43:00 +02:00
Todd Gamblin
940e35059e travis: bring back macOS test in unit test stage 2018-09-03 07:27:21 -07:00
Todd Gamblin
03542f2a07 travis: clean up .travis-ci.yml wrapping and indentation
- fix line wrapping in travis.yml to make parts more legible
- Travis can handle multi-line if statements if you use semicolos.
2018-09-03 07:27:21 -07:00
Todd Gamblin
e58c6e1b73 travis: fix macOS builds, avoid brew autoupdate 2018-09-03 07:27:21 -07:00
Adam J. Stewart
4920f1cff1
Vim: add version 8.1.0338 (#9155) 2018-09-01 08:12:14 -05:00
Adam J. Stewart
c5c3b65c60
GDAL: add version 2.3.1 (#9156) 2018-09-01 07:32:24 -05:00
Cody Balos
e7df911026 SUNDIALS: add new versions, update hashes, and apply clang fix (#9115)
Added SUNDIALS 3.1.2 and 4.0.0-dev.1 versions and relevant dependencies
(3.1.2 requires CMake 2.8.12). Updated all versions to use sha256 hashes.
Addressed issue specific to clang compiler on macOS.
2018-08-31 12:14:15 -07:00
Francesco Di Natale
3d92b975f3 py-filelock: new package (#9136)
* Addition of py-filelock and first page of versions.

* Addition of setup.py patch for setuptools.

* flake8 failure fixes.

* Reduced url declaration to a single line.

* Correction to py-filelock to use distutils.
2018-08-31 11:21:55 -07:00
Geoffrey Oxberry
d54a91fd2b openblas@0.3.3: new version (#9143) 2018-08-31 11:14:37 -07:00
rice31
20a914374e libpng package: add version (#9142) 2018-08-31 10:26:13 -07:00
Levi Baber
535b09d811 singularity: new version 2018-08-31 08:47:24 -07:00
Michael Sternberg
d95fdc8441 Update instructions to initialize Spack-global license files (#8991)
* Suggest adding contents before the explanatory comment to avoid
  issue #6534
* Mention that the license file may not need to be edited
2018-08-29 22:04:14 -07:00
Michael Sternberg
a86f22d755 Intel prefixes (#7469)
Consolidate prefix calculation logic for intel packages into the
IntelPackage class.

Add documentation on installing Intel packages with Spack an
(alternatively) adding them as external packages in Spack.
2018-08-29 21:09:34 -07:00
Mark W. Krentel
e860307c31 binutils: add variant 'nls' for native language support (#9124)
Add variant 'nls' for native language support with default True.
The default inside binutils was always on, but this gives a way of
turning it off, if desired.

Adjust the dependencies.  Flex is never used for a one-time build.
Bison and m4 should not be needed, except that prior to rev 2.30, gold
did not include its generated files, so bison is needed when +gold.

Drop configure option --enable-interwork.  This option does not exist.
2018-08-29 20:32:41 -07:00
Adam J. Stewart
1383834d15
Add MDB driver support to GDAL (#8614) 2018-08-29 12:35:56 -05:00
Andreas Baumbach
1e0c337fe9 New package: NEST Simulator (#9092) 2018-08-29 13:30:29 -04:00
Abhinav Bhatele
23f89ccc0b ROSS package: fix build error and add v7.0.0 (#9128) 2018-08-29 13:13:50 -04:00
Andreas Baumbach
5aded248a5 spack view suggests -I option for merge conflict (#9035) 2018-08-29 13:10:55 -04:00
Andrew Gaspar
ebf21d1d87 Adds a package for optional-lite header-only library (#9117) 2018-08-29 18:14:59 +02:00
Christoph Junghans
5de47da740
flecsi: fix build (#9129) 2018-08-29 09:23:02 -06:00
Andrew Gaspar
f540b2ca1b Adds a package for span-lite header-only library (#9118) 2018-08-29 11:01:35 +02:00
Geoffrey Oxberry
eeaa924a6f hdf5@1.10.3: new version (#9121) 2018-08-29 10:58:24 +02:00
Geoffrey Oxberry
c7a8b47e74 ipopt@3.12.10: new version (#9120) 2018-08-29 10:58:05 +02:00
Massimiliano Culpo
cf807f6fd1
New package: channelflow (#9111) 2018-08-29 10:54:34 +02:00
Douglas Duckworth
1a7e9e58d0 added star 2.6.1a (#9103) 2018-08-29 07:34:04 +02:00
Michael Kuhn
3d7457edde go: Update to 1.11 (#9101) 2018-08-29 07:00:40 +02:00
Andrew Gaspar
168c6d9428 Add string-view-lite package for header only library (#9125) 2018-08-29 06:54:20 +02:00
Christoph Junghans
cefc1069e6 gasnet:version bump (#9127) 2018-08-29 06:48:52 +02:00
Jannek Squar
b78ccb74d8 atk package: hotfix #9099 (#9102)
Adds explicit python3 dependency for meson
2018-08-28 16:35:30 -04:00
Adam J. Stewart
be42b8df19 Java updates: new versions, classpath, and JAVA_HOME (#8613)
This PR includes the following changes:

* Added JDK 10
* Changed the JDK version numbers according to the consensus reached
  in #2284
* Added spec['java'].home and spec['java'].libs, similar to #3367
  (JDK and IcedTea)
* Added a check to prevent people from installing JDK on macOS
* Set CLASSPATH for packages depending on Java (JDK and IcedTea)
* Add TODO for extending virtual packages (not currently possible)
* Add TODO for adding Java dependents to views
* Add TODO for packages which extend multiple packages (e.g. Java
  and Python)
2018-08-28 14:35:13 -04:00
Douglas Duckworth
04c25ac468 perl-star-fusion package: update latest version (#9104) 2018-08-28 13:22:18 -04:00
Andreas Baumbach
7d61ef5078 import spack load error message (#9088)
It now additionally prints spec hash and options
2018-08-27 21:26:24 -04:00
Massimiliano Culpo
6f5a68a58d Moved functions returning default scopes to spack.config
The functions returning the default scope to be modified or listed
have been moved from spack.cmd to spack.config.

Lmod now writes the guessed core compiler in the default modify scope
instead of the 'site' scope.
2018-08-27 14:49:50 -07:00
Massimiliano Culpo
8ecf5ae2ee Spack can guess lmod core compilers, if none is already present
closes #8916

Currently Spack ends with an error if asked to write lmod modules files
and the 'core_compilers' entry is not found in `modules.yaml`. After
this PR an attempt will be made to guess that entry and the site
configuration file will be updated accordingly.

This is similar to what Spack already does to guess compilers on first
run.
2018-08-27 14:49:50 -07:00
Sasha Nícolas
2fdfa46735 dyninst: add dependency on libiberty (#8806)
* Adding dependency of libiberty to Dyninst package configuration.
* Now it depends on libiberty package and not binutils.
2018-08-27 14:34:05 -07:00
Alan Williams
c56992587e Add line in trilinos/stk configuration to enable stk_ngp package. (#9082)
The Trilinos/stk configuration is pretty Nalu specific right
now (and is acknowledged as such in a comment in package.py), and
this commit enables a module that Nalu will be needing.
2018-08-26 19:49:35 -05:00
Levi Baber
bba5967dcc r-goseq: new package (#8939)
* r-goseq: new package

* r-goseq: git not url

* r-goseq: adding packages needed at runtime

* r-goseq: package type

* r-goseq: dep types

* r-goseq: one more
2018-08-26 19:45:23 -05:00
lingnanyuan
7c06492d94 braker: add new version 2.1.0 (#8946)
* braker: add new version 2.1.0

* Set verison in descending order.

* Update URL.

* url

* braker: change url format.
2018-08-26 19:44:53 -05:00
TZ
2ae1bfd283 patch for OF.com@18.06 to correctly find KAHIP (#8982)
- OpenFOAM-v1806/wmake/scripts/have_kahip must check
  $KAHIP_ARCH_PATH instead of $METIS_ARCH_PATH to detect the KAHIB
  library
- use a local patch file until the issue is hopefully fixed upstream
2018-08-26 19:44:06 -05:00
Adam J. Stewart
cc01e89d6b
Update to latest version of pytest and dependencies (#9087)
* Update to latest version of pytest and dependencies

* Fix bug in installation tests
2018-08-25 14:12:46 -05:00