Mario Melara
13eb461ec3
Adding bowtie2 package along with patch
2015-09-24 11:21:54 -07:00
Mario Melara
521632b3dc
Added samtools bioinformatics software
2015-09-23 16:30:44 -07:00
Todd Gamblin
6d4eed3845
Merge pull request #102 from RasmusWL/features/fish
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Add fish (shell) package
2015-09-23 01:37:59 -07:00
Todd Gamblin
82ea7aec51
Merge pull request #106 from justintoo/add-package-doxygen
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(Package) Add Doxygen (v1.8.10)
2015-09-23 01:37:31 -07:00
Todd Gamblin
d474eeb424
Merge pull request #110 from scalability-llnl/features/boostupdate
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update boost package for new releases
2015-09-23 00:32:22 -07:00
Todd Gamblin
5d6baacc56
Merge pull request #111 from scalability-llnl/features/protobuf
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add protobuf package
2015-09-23 00:31:26 -07:00
Todd Gamblin
46cf0a23d9
Merge pull request #112 from scalability-llnl/features/glog
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add glog package
2015-09-23 00:30:37 -07:00
Todd Gamblin
f02af701e5
Merge pull request #113 from scalability-llnl/features/gflags
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add gflags package
2015-09-23 00:29:50 -07:00
Todd Gamblin
5f826a0ab7
Merge pull request #114 from scalability-llnl/features/snappy
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Features/snappy
2015-09-23 00:27:27 -07:00
Todd Gamblin
ba83dd56a1
Merge pull request #115 from scalability-llnl/features/lmdb
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add lmdb package
2015-09-23 00:21:22 -07:00
Adam Moody
84823ed828
add lmdb package
2015-09-22 12:17:01 -07:00
Adam Moody
3ade141829
add leveldb package
2015-09-22 11:59:09 -07:00
Adam Moody
30acc6f2f0
add snappy package
2015-09-21 16:45:59 -07:00
Adam Moody
22ba02b22b
add gflags package
2015-09-21 16:40:23 -07:00
Adam Moody
b5d7cd55ce
add glog package
2015-09-21 16:30:11 -07:00
Adam Moody
e4e22ed17e
add protobuf package
2015-09-21 16:19:50 -07:00
Justin Too
3691201b4f
(Package) Add Spot C++ library (v1.99.3)
2015-09-21 11:04:56 -07:00
Todd Gamblin
d0e22b2240
Add ref counting to database. This does not handle removal properly yet.
2015-09-18 11:40:05 -07:00
Todd Gamblin
fb73979345
Allow custom timeout for database locking.
2015-09-17 16:09:59 -07:00
Todd Gamblin
e17ad6a684
Simplify lock context managers.
2015-09-17 01:05:19 -07:00
Todd Gamblin
ccf311c9c6
Several changes to DB implementation.
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1. Database stores a file version, so we can add to it in the future.
2. Database indexed by hashes and not numerical indexes.
3. Specs built by database have consistent hashes and it's checked.
4. minor naming and whitespace changes.
2015-09-17 00:16:12 -07:00
Gregory Becker
cd23d2eaa2
Added spack fsck and re-read from glob if the database file does not exist. Allows older versions to smoothly upgrade to the database.
2015-09-15 14:20:19 -07:00
Justin Too
99ca0f3153
(Package) Add Doxygen (v1.8.10)
2015-09-11 20:29:18 +00:00
Rasmus Wriedt Larsen
b06117f77a
Add fish (shell) package
2015-09-03 14:19:27 -07:00
Gregory Becker
9c8e46dc22
Added conservative locking to the spack commands that access the database at _index
2015-09-03 09:21:19 -07:00
Adam Moody
ac088bae6a
update boost
2015-09-01 16:02:14 -07:00
Gregory Becker
c3246ee8ba
Removed incorrect stage removal code from cleanup() in do_install()
2015-08-31 09:46:55 -07:00
Gregory Becker
f406fcb843
Fixed several issues from code review
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Most importantly wrote the Lock, Read_Lock_Instance, and Write_Lock_Instance classes in lock.py
Updated the locking in database.py
TODO: Lock on larger areas
2015-08-31 09:38:38 -07:00
Todd Gamblin
c5c9ada7b0
Fix for GitHub #95
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develop: compiler clang@unknown created for /usr/bin/clang-format
https://github.com/scalability-llnl/spack/issues/95
2015-08-27 02:04:58 -07:00
Todd Gamblin
6af49d41fd
Add elfutils.
2015-08-27 00:10:53 -07:00
Todd Gamblin
13fd742610
Merge branch 'features/pidx' into develop
2015-08-26 23:48:52 -07:00
Todd Gamblin
babbc5bb45
Minor fix-ups for PIDX
2015-08-26 23:48:36 -07:00
Todd Gamblin
10bc981d0b
Merge pull request #28 in SCALE/spack from bugfix/scipy to develop
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# By Gregory L. Lee
# Via Gregory L. Lee
* commit '2c3e7a6f87ef5f8b5ba154b5a8b7da7a119f4a67':
added graphviz dependency and dysect variant to STAT
added graphviz and dependencies
use filter_file instead of patch
added lapack and blas deps, fixed gfortran compiler dependency
2015-08-26 22:12:14 -07:00
Gregory Becker
9345e78779
Fixed inaccurate comment in spec.py
2015-08-25 16:31:09 -07:00
Gregory Becker
ce8df65d7b
Eliminated unnecessary differences in pull request
2015-08-25 16:28:55 -07:00
Gregory Becker
e32c59f805
Fixed file locking. Fix is slightly ugly (lock integer added) but it gets the job done
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It avoids having to spin simply on the OSError.
2015-08-25 15:32:45 -07:00
Gregory Becker
4a2bd1753a
Added dependency indices to database, ensuring correctly reconstructed specs from database
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Began work on file locking, currently commented out.
2015-08-25 15:11:18 -07:00
Gregory L. Lee
2c3e7a6f87
added graphviz dependency and dysect variant to STAT
2015-08-25 11:48:12 -07:00
Gregory L. Lee
1c9c5a385d
added graphviz and dependencies
2015-08-25 11:38:39 -07:00
Gregory L. Lee
689dbb8fb6
use filter_file instead of patch
2015-08-24 08:51:41 -07:00
Jim Galarowicz
24c609b6df
Updates to the Krell related product packages.
2015-08-22 09:34:44 -05:00
Gregory Becker
fb1874165b
Eliminated all calls that relied on finding all packages in the opt directory
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Replaced them all with references to the database
Implemented caching in the database. The database now only re-reads data
if the database file exists and was changed since this file last wrote to it.
Added the installed_db field to the spack instance
Left the call to all_specs from testdirectory_layout.py for now.
2015-08-21 17:00:39 -07:00
Gregory Becker
55f68bb2b0
Added hashes to the database
2015-08-21 13:04:27 -07:00
Gregory Becker
1da56e5290
Added a database of installed packages.
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No methods use the database so far.
Also, a bug fix:
Previous version did not remove the staging directory on a failed install
This led to spack refusing to uninstall dependencies of the failed install
Added to cleanup() to blow away the staging directory on failed install.
2015-08-21 11:32:12 -07:00
Jim Galarowicz
fe9959d4da
Merge remote-tracking branch 'upstream/develop' into develop
2015-08-18 08:05:25 -05:00
Peer-Timo Bremer
40b21d7cbe
Initial version of PIDX package
2015-08-17 15:38:12 -07:00
Gregory L. Lee
bd1cd83d71
added lapack and blas deps, fixed gfortran compiler dependency
2015-08-17 11:54:14 -07:00
Gregory L. Lee
92ea86dc36
moved lapack package to netlib-lapack
2015-08-14 16:30:35 -07:00
Gregory L. Lee
ec47ab16ce
updated blas and lapack packages
2015-08-14 16:27:51 -07:00
Todd Gamblin
c8f65c1530
Fix 2.6 incompatibility
2015-08-13 00:21:02 -07:00
