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Author SHA1 Message Date
Adam J. Stewart
2723db9f73
Add GMT, CitcomS, and fstrack packages (#9768) 
* Add initial packages for citcoms and dependencies

* Ignore Pythia imports

* Add py-merlin package

* Add GMT package

* Fixes to get GMT working

* Get hc package building

* Get CitcomS 3.2.0 working

* Add fstrack package

* Fix hash
 2018-11-14 23:30:44 -06:00
Levi Baber
b9c50249cf r-cairo: new package (#9794) 
* r-cairo: new package

* Update var/spack/repos/builtin/packages/r-cairo/package.py

Co-Authored-By: baberlevi <baberlevi@gmail.com>
 2018-11-14 21:44:55 -06:00
dorier
8a41cbf813 Argobots: added @develop version and +valgrind variant (#9664) 
* added develop version in argobots package and added valgrind variant

* made autotools required only for develop version

* corrected style

* Added --disable-valgrind

Added --disable-valgrind to explicitly disable it when +valgrind isn't provided.
 2018-11-14 21:39:35 -06:00
Justin Stanley
12177e41f0 r-phytools: new package at 0.6-60 (#9766) 
* r-phytools: new package at 0.6-60

* r-phytools: add list_url

* r-phytools: add deps, dep versions
 2018-11-14 21:39:05 -06:00
Geoffrey Oxberry
605dc8bf85 openblas: add headers property (#9831) 
This commit adds only the public headers from the full list of headers
installed by OpenBLAS; this list of headers is the same as in
netlib-lapack.
 2018-11-14 21:35:42 -06:00
Mark W. Krentel
b53eb2026a elfutils: add version 0.174. (#9812) 
Pass cflags to configure so that configure gets the values from the
spack install line.

Disable -Werror so that we don't fail the build over a stray warning.
 2018-11-14 19:05:08 -06:00
Mark W. Krentel
2554e24d09 libunwind: add version for current snapshot (#9770) 
Libunwind releases are few and far between, so we need access to
recent snapshots from the git repository.

Pass cflags to configure so that make will respect the value from the
spack install line.
 2018-11-14 18:56:52 -06:00
Sergey Kosukhin
75e86a61fe netcdf-fortran: add LDFLAGS to fix contents of libnetcdff.la. (#9647) 2018-11-14 09:40:16 -06:00
Levi Baber
6a08eb88b1 new package: time (#9842) 2018-11-14 09:38:37 -06:00
Michael Kuhn
9a7a532084 node-js: add 10.13.0 and 11.1.0 (#9781) 
Required for openssl@1.1 compatibility.
 2018-11-13 11:39:52 -06:00
Michael Kuhn
e20efb3f8f cmake: add 3.12.4 (#9758) 2018-11-13 11:34:09 -06:00
Michael Kuhn
eddba22e1c perl-net-ssleay: fix build (#9783) 
- Add 1.85
- OPENSSL_PREFIX has to be set in the environment, otherwise Spack's
  openssl will not be found
 2018-11-13 11:30:04 -06:00
Justin Stanley
e1f9ddd574 erne: new package starting at 2.1.1 (#9676) 
* erne: new package starting at 2.1.1

* erne: remove unused configure args

* erne: remove unused prefix arg

* erne: add explicit mpi disable
 2018-11-13 11:02:39 -06:00
Luigi Calori
4f27bb4f4e Fix #9673 : build fonts on powerpc architecture (#9683) 
* use AutotoolsPackage so config.guess get updated by autoreconf step, fix build problem on ppc #9673

* same error, same fix under ppc arch
 2018-11-13 11:01:46 -06:00
Douglas Duckworth
ab48a96149 added r-bindr v 0.1.1 (#9717) 2018-11-13 10:58:31 -06:00
Levi Baber
b668e66b81 r-genomeinfodbdata: url fix (#9732) 2018-11-13 10:57:04 -06:00
Matthias Diener
8b1a5a8e6c intel-parallel-studio: add missing updates (#9742) 
* intel-parallel-studio: add missing updates

* add 2018.4
 2018-11-13 10:56:31 -06:00
Levi Baber
25d71e68f2 Packages/trinotate fix (#9745) 
* trinotate: fix perl location

* trinotate: not where that is

* trinotate: glob

* trinotate: needs perl-dbd-sqlite
 2018-11-13 10:55:59 -06:00
Alberto Chiusole
7938ff9653 Add pic variant to cflags in boost. (#9750) 
* Add pic variant to cflags in boost.

* Improve description in pic variant of boost, see #9750.
 2018-11-13 10:55:01 -06:00
Miles Perry
63535542a1 new version (#9752) 2018-11-13 10:53:47 -06:00
Michael Kuhn
05a4d5a0c6 glib: add 2.56.3 (#9754) 2018-11-13 10:52:56 -06:00
Michael Kuhn
55f8dbbba0 sqlite: add 3.25.3 (#9756) 2018-11-13 10:50:54 -06:00
Michael Kuhn
c7f2c819a1 gdbm: add 1.18.1 (#9757) 2018-11-13 10:50:30 -06:00
Michael Kuhn
52e990dfa1 lmdb: add 0.9.22 (#9759) 2018-11-13 10:49:24 -06:00
Daryl W. Grunau
ff30ab462b eospac version bump (#9763) 2018-11-13 10:47:11 -06:00
Justin Stanley
c26a965c3b r-combinat: new package at 0.0-8 (#9764) 
* r-combinat: new package at 0.0-8

* r-combinat: add list_url
 2018-11-13 10:41:54 -06:00
Michael Kuhn
a852028b02 glib: explicitly disable gtk-doc (#9771) 
glib should not use the globally installed gtk-doc. Otherwise, gtk-doc
can fail with Python errors such as `ImportError: No module named site`.

This is due to the fact that Spack sets `PYTHONHOME`, which can confuse
the global Python installation that is used by gtk-doc.
 2018-11-13 10:37:19 -06:00
Michael Kuhn
fe8c287036 nginx: add 1.15.6 (#9780) 
Needed to compile with gcc@8 and recent versions of glibc.
 2018-11-13 10:25:00 -06:00
Eric
3cd3631fb6 DIAMOND: add version 0.9.22 (#9790) 2018-11-13 10:20:53 -06:00
Eric
4b63b93485 stringtie: add version 1.3.4d (#9791) 2018-11-13 10:20:30 -06:00
Hans Pabst
23c2d5af38 LIBXSMM 1.10 (#9813) 
* LIBXSMM 1.10

* Accurately replaced MD5 with SHA256 sums (libxsmm).
 2018-11-13 10:09:47 -06:00
Eric
fea0722daa aragorn: add version 1.2.36 (#9817) 2018-11-13 10:09:14 -06:00
Eric
5ba76cf908 minimap2: Add versions 2.10 and 2.14 (#9818) 
* Also add missing zlib dependency
 2018-11-13 10:08:42 -06:00
Quinn
2f454c5317 New Package: Nyancat (#9819) 
* nyancat: adding the most important piece of software ever written

* nyancat: some formatting updates

* nyancat: flake8 error fix
 2018-11-13 10:07:54 -06:00
Matthias Diener
6743aef554 charm++: add version 6.9.0 (#9827) 2018-11-13 10:03:22 -06:00
Christoph Junghans
78c7a8218c gromacs: added 2018.[34] (#9828) 2018-11-13 10:02:59 -06:00
Geoffrey Oxberry
f1e5f8e37b hypre: patch only @2.13.0 and @2.14.0 on darwin (#9832) 2018-11-13 09:54:09 -06:00
Michael Kuhn
3f0fc98062 wt: add missing pkgconfig dependency and fix boost version range (#9835) 
wt does not build with newer versions of boost.
 2018-11-13 09:53:44 -06:00
Michael Kuhn
59a6eada53 libssh: fix fetching and add 0.8.5 (#9779) 
Required for openssl@1.1 compatibility.
 2018-11-13 09:51:57 -06:00
Michael Kuhn
68222f2639 libevent: add 2.1.8 and 2.0.22 (#9777) 
- 2.1.8 is required for openssl@1.1 compatibility
- Introduce url_for_version since the URL has changed starting with
  version 2.0.22
 2018-11-13 09:51:26 -06:00
Valentin Clement (バレンタイン クレメン)
1388f6e907 Add new version 1.2.0 to the package (#9837) 2018-11-13 09:49:08 -06:00
Matthias Diener
86b7e6abc3 man-db: add missing gdbm dependency (#9751) 2018-11-13 09:41:43 -06:00
Michael Kuhn
cc928481f8 openssh: add 7.9p1 (#9782) 
- Required for openssl@1.1 compatibility
- Fix openssh's privilege separation path to be below the prefix
 2018-11-13 09:41:17 -06:00
Jon Rood
b4c7ffd424 Adding Paraview version 5.6. (#9788) 2018-11-13 09:36:18 -06:00
Michael Kuhn
86e00e7294 ruby: add 2.5.3 (#9793) 
Required for openssl@1.1 compatibility.
 2018-11-13 09:35:47 -06:00
Michael Kuhn
66ef3c2b18 thrift: add missing pkgconfig dependency (#9834) 
Without pkgconfig, Spack's openssl cannot be found.
 2018-11-13 09:34:51 -06:00
Eric
f48820a71e barrnap package: Add versions 0.6 and 0.7 (#9820) 2018-11-13 09:33:56 -06:00
Adam J. Stewart
b771b4015a Fix bugs in Modules Tutorial (#9821) 
Found a couple bugs while trying to copy and paste the exact
tutorial content.
 2018-11-13 09:31:09 -06:00
Phil Tooley
16aa37bdfe New package: openimageio (#9715) 2018-11-13 00:14:29 -06:00
Phil Tooley
ff09fd5a85 New package: dcmtk (#9716) 2018-11-13 00:08:29 -06:00