* Updated function which checks if a binary file needs relocation.
Previously this was incorrectly identifying ELF binaries as symbolic
links (so they were being excluded from relocation). Added test to
check that ELF binaries are not considered symlinks.
* relocate_text was not replacing paths in text files. Added test to
check that text files are relocated properly (i.e. paths in the file
are converted to the new prefix).
* Exclude backup files created by filter_file when installing from
binary cache.
* Update write_buildinfo_file method signature to distinguish between
the spec prefix and the working directory for the binary cache
package.
"spack spec" was providing helpful error information about conflicts
that was missing from "spack install", this updates "spack install"
to provide the same information.
The original docstring had confusing wording re: what is going to
symlinked and where when using the `extend` directive, and how exactly
the symlinking is performed (not automatically on install, but using
`spack activate`). See #5559.
Showing "Normalize" on output doesn't give users additional information,
as this step is essentially an implementation detail of concretization.
This PR skips it and shows just the input spec and the concretized one.
Printing partial hashes for input spec has been disabled.
* xsdk: Added MFEM rc package.
* xsdk: add version entry for xsdk-0.3.0-rc1 - and set it as preferred version
* xsdk: remove 'xsdk' from version - recommended by Todd.
Now the usage is:
'spack install xsdk@0.3.0-rc1'
instead of the previous usage:
'spack install xsdk@xsdk-0.2.0'
* xsdk: add petsc@3.8.0 as a dependency for xsdk-0.3.0-rc1
* mfem: fix dependency to use the corrected xsdk version
* Updated the mfem version tags.
* mfem: fix merge
* fix flake8 warning
* Modified xSDK scripts
* fixing the default package.yaml
* fix bad revert
* revert changes to superlu-dist so that the 5.2.1 update can be merged
* update xsdk to use superlu-dist-5.2.1
* update alquimia for xsdk
* fix whitespace
* update hypre for xsdk
* update sundials for xsdk
* update sundials for xsdk
* Fix checking for MKL and extend range of GCC versions
* pflotran: update to release branch
* plasma: fix spec -> self.spec
* Changes to enable mfem hooks into hypre, superlu-dist, and petsc. Sundials hooks may come in the future.
* adding plasma with comment
* Bumped the version of mfem up to handle integration with sundials3.0.0. Also enabled hypre in sundials.
* Turn on the plasma package definition for testing
* Fix conflict declaration to obey ordering rules
* xsdk: udate superlu-dist dependency to v5.2.2
* plasma: change gcc dependency to workarround potential spack bug #5778
* trilinos: update hdf5 dependency to use 'hdf5+hl'
Without this change - I get the following error [triggered by 161dca6d5c9810f808 changes]
$ ./bin/spack install trilinos+hdf5
==> Error: An unsatisfiable variant constraint has been detected for spec:
hdf5@1.10.1%gcc@7~cxx~debug~fortran~hl+mpi+pic+shared~szip~threadsafe arch=linux-fedora27-x86_64
while trying to concretize the partial spec:
netcdf+mpi
^m4
^mpich@3.3a2%gcc@7 device=ch3 +hydra netmod=tcp +pmi+romio~verbs arch=linux-fedora27-x86_64
^zlib@1.2.11%gcc@7+optimize+pic+shared arch=linux-fedora27-x86_64
netcdf requires hdf5 variant +hl, but spec asked for ~hl
* plasma: add in -lm dependency per #6046
* update sundials version to 3.0.0
* Add fixes to support Netlib LAPACK
* mfem does not use cmake for builds [anymore] - so remove code corresponding to this dependency.
This enables mfem build on OSX [with xcode/clang compilers]
* mfem: update to v3.3.2-rc4
* add patch for building sundials on mac
* xsdk: enable plasma for gcc-4.9+ - same as what plasma/package.py does.
* magma: Fix for cuda-9.0 as it does not support sm20
nvcc fatal : Unsupported gpu architecture 'compute_20'
* add in code for 'spack install xsdk+cuda' - which installs magma
* fix flake8 warning
* fix flake8 warnings
* Updated to the latest MFEM RC.
* alquimia: fix to use petsc-3.8.0+ versions
* petsc: update to version 3.8.1
* petsc: add in conflict between petsc-3.8.0 & mkl
* xsdk: update petsc to 3.8.1 to get MKL build fix
* petsc: fix superlu_dist dependency
* petsc: when hdf5 depends on zlib - petsc+hdf5 should also be configured with zlib
* petsc: fix dependency [of zlib to be on hdf5 - and not on petsc]
* petsc: fix pkgconfig error - with incorrect library link order that can break mfem examples with static build
* petsc: use the fact that hdf5/package.py has a hard dependency on zlib [so no need to check for this dependency in code]
recommended-by: @davydden
* petsc: change hdf5 dependency to 'hdf5+hl' as petsc configure is looing for -lhdf5_hl
https://github.com/spack/spack/issues/5846
* plasma: also detect -lgfortran
* update sundials version to 3.1.0
* alquimia: xsdk-0.3.0-rc -> xsdk-0.3.0
* petsc: update to version 3.8.2
Includes pkgconfig fix [for mfem static build failure]
* Revert "petsc: fix pkgconfig error - with incorrect library link order that can break mfem examples with static build"
This reverts commit d1afa8c20d4313fdc42a27e5380573b035b32998.
* xsdk: update to use petsc-3.8.2
* Fixed a problem with MFEM trying to use mpicxx instead of the spack defined compiler.
* Minor changes to the mfem build and pointing at mfem's release branch that is currently undergoing internal testing.
* Enabling shared build for Plasma
* plasma: do not look for libgfortran on cray - spack finds the wrong one from the frontend
'-L/usr/lib64/gcc/x86_64-suse-linux/4.3 -L/usr/lib64 -lgfortran'
* Some changes to the mfem package that are in the process of being pulled into spack/develop.
* xsdk: switch from 0.3.0-rc1 to 0.3.0
* fix flake8 warnings
* plasma: extract plasma changes from xsdk-0.3.0
* plasma: cleanup per review
- netlib-lapack: add support for spec['lapack:c'].libs, spec['blas:c'].libs
- add getblaslapacklibs() to eliminate duplicate code in edit() and build_targets()
- eliminate string manipulation of ld_flags
- remove gfortran check (will check later)
- remove build() (will check later)
* netlib-lapack: fix tuple per review
* netlib-lapack: use spec[lapack:c,fortran]
