Commit graph

6140 commits

Author SHA1 Message Date
Miles Perry
21ff3c9ac1 pbbam: new package (#8365)
* pbbam: new package

* pbbam: updated version

* pbbam: added option tests handling

* pbbam: flake8 edits
2018-06-07 22:44:30 -05:00
Corey McNeish
c8a3a650fa Fix hydrogen@develop build (#8262)
* Delete support for old versions of Elemental in Hydrogen

* Fix cmake_args versions in lbann

* Remove unused import (again)

* Revert elemental to pre-llnl fork

* Strip tailing whitespace from libgfortran.so

* Fix flake8

* Remove debug print

*  * Add back elemental@develop
 * Prohibit installation of hydrogen previous to 0.99

* Fix flake8

* Change cmake_args error to a conflicts for old versions of Hydrogen

* Use ~ not -
2018-06-07 18:08:23 -05:00
Yifan Zhu
1a8bb78824 Fermi Science Tools: New package (#8126)
* fermisciencetools: new package

* fermisciencetools: new package

* added comments about the error in building the source distribution; fixed flake8 errors
2018-06-07 14:07:39 -05:00
healther
1d3ad6ea7e add sqlitebrowser (#8418)
* add sqlitebrowser

Change-Id: I20cac709509e82d348cebc11b0d584b53b2ad3d4

* add message and clean up unnecessary code

Change-Id: Ib9d2229ee25d751274680d06824891ee78fa5970

* and make flake8 happy

Change-Id: I814eb89eefe1767af4d8043b08b61991750516df

* make gcc-independence great again

Change-Id: I75f7271757782a6735eb7f03c0551d190722974d

* remove explicit import of dso_suffix

Change-Id: I626c6391b22524895199db5508606c4cf22bf9b5
2018-06-07 11:34:29 -05:00
healther
af881b8c2e fix qt@5.8: build on systems without wayland (#8417)
* fix qt@5.8: build on systems without wayland

Change-Id: I56b83208edd46f50e003d82c071e296e905bfb15

* add links

Change-Id: Ia16fc20632690340f33df77fbdcb1a166d49cedc

* move 5.8 comparison into 5.7 configure block

Change-Id: I7dc606beeb5b5bf4e8263bc50d28de6591633c99
2018-06-07 10:50:05 -05:00
Daryl W. Grunau
a6e0837b31 googletest: add a shared variant for all supported versions (#8373)
* add a shared variant for all supported versions

* address comment from @citibeth about MacOS lib installs

* address additional comments from @citibeth about MacOS lib installs

* set +shared variant to be default behavior
2018-06-07 10:34:37 -05:00
healther
b5a48f44bc add commented test dependencies (#8407)
* add commented test dependencies

Change-Id: I38ffd3caa77a59f2a0a7ae92a9c8e8215cf5b4d6

* readd make('test') to openssl

Change-Id: Ia3733a3848a2a26729b4050c7d4439ea9de17b1a
2018-06-07 10:33:59 -05:00
Sajid Ali
f1ba43d4a4 modified: var/spack/repos/builtin/packages/py-psutil/package.py (#8420) 2018-06-07 10:26:48 -05:00
Javier Cervantes
f3cb8ee6cf Add new package: ftgl (#8416)
* Add new package: ftgl

* Check version using decorator
2018-06-07 08:48:27 -05:00
Axel Huebl
93791beb23 openPMD-api: Update Dependencies (#8330)
We need a newer version of HDF5 and dropped the boost dependency.

Modernize the test variant to the spack test functionality.
2018-06-07 08:12:18 -05:00
healther
7e649c1205 add package py-cartopy and dependencies (#8406)
* add package py-cartopy

Change-Id: Ifbe541e852921c384a381594a2c1110814556311

* fix comments and flake8

Change-Id: I8d5e994580e8252e00654e68ad79d74e06089939

* remove pip dependency... not sure why added in the first place

Change-Id: Ie2a788887dac30778cc43931a0732980a347514d

* move build, link, run to default dependencies

Change-Id: I1ec0cb7dc4a697c4ca9e68a0cc0d8694cc21c100
2018-06-07 08:10:39 -05:00
Javier Cervantes
728351faae Add new package: davix (#8376)
* Add new package: davix

* Add list_url

* Remove extra spaces, add list_depth and specify dependency type
2018-06-06 18:54:07 -05:00
Sheng Di
8e161f1034 remove pwrType from the interface SZ_compress_args() (#8414) 2018-06-06 17:44:47 -05:00
Yifan Zhu
2c13e9c0e5 r-mitml: new package and its dependencies r-jomo and r-pan (#8412) 2018-06-06 17:44:32 -05:00
ynanyam
5c3adff49b libjpeg-turbo: updated checksums and added autoreconf for older versions (#8411) 2018-06-06 16:18:03 -05:00
Axel Huebl
0495b5474b ADIOS: Serial API with Parallel Lib (#8409)
Provides a patch for the fix in
  https://github.com/ornladios/ADIOS/pull/182

Installed ADIOS MPI-enabled libraries are with that able to also
perform serial I/O without the need to start the whole app via
`mpiexec`.
2018-06-06 15:38:36 -05:00
Javier Cervantes
8b261506cb Add new package: rngstreams (#8395)
* Add new package: rngstreams

* Remove unnecessary list_url
2018-06-06 12:10:56 -05:00
Axel Huebl
d1d731bf83 xsimd: test type (#8405)
Add the new type 'test` to the `googletest` dependency
of xsimd.
2018-06-06 12:10:34 -05:00
Javier Cervantes
34149e9a2b Add new package: prng (#8396)
* Add new package: prng

* Add missing dependencies and use force_autoreconf option

* Add dependency types
2018-06-06 12:07:16 -05:00
Axel Huebl
1a27f911d3 Fix ADIOS 1.13.1: Maxium SZ (#8408)
Fix the maximum accepted SZ version for the latest ADIOS release.
2018-06-06 11:58:15 -05:00
Axel Huebl
e6d2cd6ff0 numpy: nosetest (#8404)
the type 'test' exists now :-)
2018-06-06 10:33:31 -05:00
Axel Huebl
6449f5bde7 ISAAC Server 1.3.3 (#8403)
Forgot to bump this package with the library release.
2018-06-06 10:12:47 -05:00
Andrey Prokopenko
c86628880f Trilinos update (#8363)
* trilinos: add more package conflicts

This was done by putting in required lib dependencies from each
package's `cmake/Dependencies.cmake`.

* trilinos: added few more trilinos packages

* trilinos: hiccup fix
2018-06-06 08:04:33 -05:00
lingnanyuan
7c1231e7f8 r-splitstackshape: Create new package. (#8370)
* r-splitstackshape: Create new package.

* r-splitstackshape: Add version constraints.

* add list_url and change dependency type.
2018-06-06 08:03:23 -05:00
Sheng Di
b0b3b258c0 add 1.4.13.4 for SZ (#8375)
* add 1.4.13.4 for SZ

* undo spack link (change llnl/spack to spack/spack) and change .zip to .tar.gz

* revise package.py for SZ 1.4.13.4 based on Adam's comments.
2018-06-06 08:02:03 -05:00
Massimiliano Culpo
6cc4ad4caa py-mpmath: added version 1.0.0 (#8382)
* py-mpmath: added version 1.0.0

* Fixed checksum for version 0.19
2018-06-06 07:59:53 -05:00
Massimiliano Culpo
891a15f409 py-scikit-learn: added version 0.19.1 and updated dependencies (#8399)
py-numpy: added version 1.14.3
py-scipy: added version 1.1.0
2018-06-06 07:41:48 -05:00
Massimiliano Culpo
38ccc07a48
py-theano: added version 1.0.2 (#8400) 2018-06-06 13:58:20 +02:00
Massimiliano Culpo
e107a50d0a py-sympy: added version 1.1.1 (#8381) 2018-06-05 13:42:18 -05:00
Massimiliano Culpo
ee735e58a8 py-cython: added version 0.28.3 (#8379) 2018-06-05 13:36:29 -05:00
Massimiliano Culpo
88e18a3db7 Added py-pip 10.0.1 and py-setuptools 39.2.0 (#8377) 2018-06-05 13:36:09 -05:00
Massimiliano Culpo
e7f82163bf py-virtualenv: added version 16.0.0 (#8380) 2018-06-05 13:35:43 -05:00
Daniel Topa
a226559347 added line 43 (#8369)
version('1.4.1.2', '38c7d33210155e5796b16d536d1b5cfe')

Signed-off-by: Daniel Topa <dantopa@lanl.gov>
2018-06-04 15:04:45 -05:00
Daryl W. Grunau
4ea16fe3e4 clean up version names (#8368) 2018-06-04 15:04:12 -05:00
Yifan Zhu
fcfcd7689a New package: phast (#7993)
* adding partially completed recipe for phast. will need clapack as dependency

* try to install phast

* seems to still need CLAPCK

* using CLAPACK instead

* phast: updated

* fixed flake8 error

* phast cannot build with clapack built with external blas?

* phast: depend on clapack built without external blas

* fixed flake8 errors

* phast: updated build_directory
2018-06-04 13:22:47 -05:00
Yifan Zhu
3144eb4039 New package: clapack (#7992)
* clapack: new package

* clapack: updated edit phase and fixed flake9 errors

* clapack: added description for variant

* clapack: updated

* removed .package.py.swo
2018-06-04 13:19:27 -05:00
Axel Huebl
add7f2b09a pybind11: test functionality (#8304)
* pybind11: test support

Add a test functionality to pybind11.

* CMake: test also on "make check"

Some projects use non-CTest manual targets for tests.
2018-06-04 09:50:02 -05:00
Mario Melara
20a89ca326 Add branch with bugfix (#8355) 2018-06-03 22:20:57 -05:00
healther
ff56d739a0 add 2.17.1 for git (#8316) 2018-06-02 19:28:54 -06:00
Christoph Junghans
bfd9ebaa92
legion: version bump (#8352) 2018-06-02 19:27:46 -06:00
Matthias Diener
fed9cf0777 cmake: update version (#8357) 2018-06-02 16:24:37 -07:00
George Hartzell
b306493884 Fix digest for abyss@1.5.2 (#8341)
* Fix digest for abyss@1.5.2

The digest value for v1.5.2 appears to have changed.  This value works
for me, today.

The existing value v2.0.2 works as is.

* Use "download" URL for ABYSS

Following the suggestion of the project team, switch to using the
release tarballs from the "download" URL instead of the automagically
generated ones at the "archive" URL.

Converstation here: https://github.com/bcgsc/abyss/issues/232
2018-06-01 15:06:45 -05:00
Gregory Lee
9a486b9709 added avro and avro_json_serializer python packages (#8351) 2018-06-01 15:06:27 -05:00
Gregory Lee
4395d21752 added py-cffi 1.11.5 (#8349) 2018-06-01 13:13:33 -05:00
Daryl W. Grunau
8d40f12853 make provision to install version 6.4.0beta.2 (#8338)
* make provision to install version 6.4.0beta.2

* drop flang.patch for the newer version per junghans
2018-06-01 10:49:26 -05:00
Michael Kuhn
bda05830da gmake: fix build with glibc 2.27 (#8344)
Also add an nls variant for gettext support.
2018-06-01 10:47:13 -05:00
Mayeul d'Avezac
287a43ce35 Adding nektar++ package (#8167)
* Adding nektar++ package

* - -> ~ and add explicit conflict with metis

* Add messages explaing nektar's conflicts
2018-06-01 09:30:06 -05:00
Massimiliano Culpo
16fb10bc7e
subread: use compiler wrappers when compiling (#8328) 2018-06-01 10:30:47 +02:00
Nate Roberts
ed64b8dace Added dependency for hdf5 version number (known incompatibility with 1.10). (#8337) 2018-05-31 20:29:44 -05:00
George Hartzell
cff6255e56 Use GitHub URL for pigz, supports > 1 release (#8339)
The URL that we were using for pigz only provides the current
version.  When the author released v2.4 the package became
uninstallable (unless you have the tarball cached).

It turns out that their are tarballs of the tagged source tree
available on GitHub and they're sufficient to build things (no
additional bits needed).

This commit switches the URL to the GitHub archive URL.

Sadly, this changes the v2.3.4 digest, but that version was no longer
available/install-able anyway, so "net-net we're still in positive
territory".
2018-05-31 20:28:08 -05:00